Color Average Interaction Strength
      0 < i.s. ≤ 1
      1 < i.s. ≤ 2
      2 < i.s. ≤ 3
      3 < i.s. ≤ 4
      4 < i.s. ≤ 5
      5 < i.s. ≤ 6
      6 < i.s. ≤ 7
      7 < i.s. ≤ 8
      8 < i.s. ≤ 9
      9 < i.s. ≤ 10
Index Hub Avg Force Num Of Links Community Value
1I_II.3 8.15400
2II.3 3.52400
3II.4 7.932500
4III.2 7.9400
5III.4 7.7400
6III_IV.6 6.154500
7IV.1 5.795400
8IV.5 2.92333600
9IV.7 5.8475400
10IV_V.4 10.44500
11IV_V.8 6.655400
12V.2 4.535450
13V.3 9.962550
14V.4 7.2075400
15V.10 5.6325450
16V.11 6.666550
17V.12 7.05167600
18Finger.5 6.0825400
19VI.2 5.235410
20VI.13 9.554510
21hI.3 6.688500
22hI.10 6.21754110
23VII.3 5.3854110
24VII.4 8.4675400
25VII.6 5.99610
26VII_VIII.2 4.4425410
27VII_VIII.3 6.95400
28VII_VIII.6 5.875410
29VII_VIII.7 5.15510
30Middle.11 5.1075410
31IX.4 9.0975410
32IX.7 7.7575410
33IX.8 1.74120
34IX.9 7.75120
35IX_X.11 6.9675400
36X.7 9.058510
37X.8 8.16400
38XII.9 6.315400
39XII_XIII.2 10.1054120
40XIII.2 11.546510
41XIII.3 6.5625400
42XIII_XIV.3 6.8525410
43XV.6 5.185480
44XV.10 8.155480
45XV.11 6.266500
46XV.14 4.355400
47XVI.6 5.0225410
48XVI_XVII.2 6.44410
49XVI_XVII.4 6.7825400
50XVII.3 4.8945110
51XVII.7 7.59125810
52Lariat.1 5.4475410
53Lariat.2 5.2375450
54Lariat.4 5.02400
55Lariat.18 7.53333650
56XVIII.2 6.605450
57XVIII.3 3.9775400
58XVIII.5 9.65400
59XVIII.11 5.782550
60XIX.6 4.945430
61XIX.8 6.035430
62XIX.11 3.508510

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Force: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2
1VII.3 hI.7 17.12963.39YesNo000
2VII.1 hI.7 18.42674.87NoNo000
3VII.1 hI.10 19.72074.73NoYes000
4II.4 hI.10 22.274912.89YesYes1100
5I.3 II.4 28.69643.79NoYes000
6I.3 hI.6 29.96684.47NoNo000
7hI.2 hI.6 32.49876.92NoNo000
8II_III.1 hI.2 33.76031.71NoNo000
9II_III.1 II_III.2 35.01883.49NoNo000
10III.2 II_III.2 36.10866.2YesNo100
11III.2 IV.1 42.410213.11YesYes100
12IV.1 VII_VIII.2 42.56123.07YesYes000
13VII_VIII.2 VII_VIII.3 12.56033.39YesYes000
14VII_VIII.3 VII_VIII.6 12.2796.57YesYes600
15VII_VIII.6 VII_VIII.7 1004.93YesYes600
16Back.5 VII_VIII.7 98.82444.93NoYes000
17Back.5 XVIII.2 98.43354.28NoYes000
18Lariat_Back.4 XVIII.2 96.04377.6NoYes000
19Lariat_Back.4 XVIII.3 95.28863.17NoYes000
20XVIII.3 XVIII.5 89.53485.05YesYes200
21XIX.10 XVIII.5 12.145810.55NoYes000
22XIII_XIV.1 XIX.10 11.29736.43NoNo000
23Lariat.25 XIII_XIV.1 10.44621.68NoNo000
24IX.4 VII_VIII.2 25.52783.63YesYes000
25IX.4 VII_VIII.6 19.70454.69YesYes000
26IX.4 V.8 20.786816.13YesNo000
27V.8 VII_VIII.7 19.83183.77NoYes600
28IV.1 VII.6 19.90733.93YesYes100
29V.4 VII.6 87.04145.24YesYes100
30IX.8 V.4 44.75261.7YesYes100
31V.4 VI.12 43.11354.85YesNo000
32IV.5 VI.12 42.84853.23YesNo000
33IV.5 IV.7 43.45853.21YesYes100
34IV.7 IV_V.5 12.83872.98YesNo000
35IV_V.5 IV_V.8 11.95033.64NoYes000
36IV.5 IX.8 43.13721.7YesYes100
37II.1 IV.5 11.09012.98NoYes100
38II.1 IX.10 10.43714.76NoNo000
39IX.4 X.8 16.275311.94YesYes000
40X.10 XIX.11 13.1235.44NoYes000
41IV.5 V.2 31.50673.21YesYes100
42IV.7 VI.13 31.56749.18YesYes100
43V.2 VI.13 30.92483.93YesYes100
44VI.13 VI_hI.1 52.330510.11YesNo000
45V.1 VI_hI.1 50.62632.88NoNo000
46V.1 V.3 47.1699.26NoYes300
47IX.9 V.3 13.99369.28YesYes300
48IX_X.3 V.3 28.086418.76NoYes000
49IX_X.3 VI.9 26.34375.49NoNo000
50VI.7 VI.9 24.76834.43NoNo000
51IX.2 VII_VIII.7 29.50648.84NoYes000
52IX.2 VIII.1 28.74833.21NoNo000
53VIII.1 XVIII.1 27.99467.68NoNo000
54Middle.11 XVIII.1 12.10283.27YesNo900
55Middle.1 Middle.2 15.05083.16NoNo000
56Middle.2 VIII.3 15.77043.28NoNo000
57VIII.3 XVI.2 16.13619.38NoNo000
58XV.14 XVI.2 16.96824.84YesNo000
59XV.14 XVIII.1 15.16184.42YesNo900
60Finger.5 Finger_VI.2 12.46711.47YesNo000
61Finger_VI.2 VI.2 14.23643.88NoYes000
62VI.2 VI.4 19.52682.38YesNo000
63VI.4 VI.7 21.28434.38NoNo000
64VI.8 VII.6 69.06332.77NoYes000
65VI.6 VI.8 69.04852.77NoNo000
66Lariat.15 Middle.1 10.94643.99NoNo000
67Lariat.15 Lariat.4 10.57336.92NoYes000
68XIX.8 XVIII.5 84.58357.22YesYes200
69XIII.2 XIX.8 19.09598.25YesYes200
70XII.9 XIX.8 64.27343.65YesYes200
71XII.9 XIV.3 60.41344.47YesNo200
72XIV.3 XV.6 59.95143.07NoYes000
73XV.6 XVII.7 64.07957.25YesYes000
74XV.4 XVII.7 21.54796.04NoYes700
75XV.4 XVIII.11 20.83275.71NoYes000
76XIV.7 XVIII.11 15.6464.47NoYes000
77XII.3 XIV.7 29.8754.47NoNo000
78XII.3 XIV.9 23.31879.61NoNo000
79XIV.9 XIV_XV.2 21.67227.31NoNo000
80XIV_XV.2 XI_XII.1 15.05676.4NoNo000
81XI.8 XI_XII.1 13.39542.64NoNo000
82XI.8 XII.2 11.731215.89NoNo000
83XI.6 XII.2 10.0648.65NoNo000
84XVII.3 XVII.7 38.36953.09YesYes700
85XVII.3 XVI_XVII.4 37.89277.87YesYes000
86XIV.7 XVI_XVII.4 16.32718.02NoYes000
87XIII.2 XII_XIII.1 10.534810.34YesNo200
88XII_XIII.1 XIV.2 10.04775.89NoNo000
89XVII.1 XVI_XVII.4 22.23791.62NoYes000
90XVII.1 XVI_XVII.5 21.41911.71NoNo000
91XVI_XVII.5 XVI_XVII.6 20.59731.87NoNo000
92XIV_XV.5 XVI_XVII.6 19.77263.5NoNo000
93XIV_XV.5 XVIII_XIX.1 18.11421.6NoNo000
94XV.2 XVIII_XIX.1 16.44411.53NoNo000
95XV.2 XVIII.12 15.60451.52NoNo000
96XIX.1 XVIII.12 13.06822.92NoNo000
97XIX.1 XVIII.10 11.36255.53NoNo000
98VI.6 VII_VIII.6 68.36457.31NoYes600

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 3.07
Number of Linked Nodes 326
Number of Links 384
Number of Hubs 62
Number of Links mediated by Hubs 221
Number of Communities 17
Number of Nodes involved in Communities 102
Number of Links involved in Communities 130
Path Summary
Number Of Nodes in MetaPath 99
Number Of Links MetaPath 98
Number of Shortest Paths 124418
Length Of Smallest Path 3
Average Path Length 21.4175
Length of Longest Path 48
Minimum Path Force 1.215
Average Path Force 5.60653
Maximum Path Force 20.08
Minimum Path Correlation 0.7
Average Path Correlation 0.950453
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.5641
Average % Of Corr. Nodes 55.3201
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.3588
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobE8pj1b.zip