Color Average Interaction Strength
      0 < i.s. ≤ 1
      1 < i.s. ≤ 2
      2 < i.s. ≤ 3
      3 < i.s. ≤ 4
      4 < i.s. ≤ 5
      5 < i.s. ≤ 6
      6 < i.s. ≤ 7
      7 < i.s. ≤ 8
      8 < i.s. ≤ 9
      9 < i.s. ≤ 10
Index Hub Avg Force Num Of Links Community Value
1I_II.4 4.7625450
2II.1 5.3525450
3II.5 9.01400
4III.3 5.83500
5IV_V.6 3.995400
6V.3 4.87400
7V.4 8.862500
8V.6 4.75500
9V.11 4.67833600
10VI.7 8.86400
11VI.8 8.055400
12VI.10 7.456500
13hI.4 4.2125400
14VII.2 5.6125400
15VII.5 6.24400
16VII_VIII.1 5.1825400
17VII_VIII.6 6.845400
18Middle.2 5.8325400
19Middle.7 8.4875400
20IX.5 7.0525400
21X.3 3.9025400
22X.8 8.6875400
23X.9 8.8175400
24XI.1 5.285400
25XII.2 4.6225450
26XII_XIII.3 7.4775400
27XIII.1 7.0925400
28XIII.3 7.81833600
29XIII_XIV.4 6.9275400
30XIV.2 8.62400
31XIV.3 4.01400
32XIV.9 3.0325400
33XV.9 3.92420
34XV.10 8.636520
35XV.14 9.1400
36XV_XVI.3 5.375400
37XVI_XVII.5 3.46420
38XVI_XVII.6 3.355400
39Lariat.5 4.07400
40XVIII.2 5.425400
41XVIII.6 7.34500
42XIX.10 5.0925400
43XIX.11 7.3575400

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Force: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2
1IX.5 VII_VIII.3 23.73863.22YesNo000
2V.7 VII_VIII.3 10010.96NoNo000
3V.7 VII_VIII.1 99.65056.92NoYes000
4IV.2 VII_VIII.1 40.8255.96NoYes000
5III.3 IV.2 35.76411.36YesNo000
6III.3 IV.3 23.88843.45YesNo000
7IV.3 hI.4 17.63866.79NoYes000
8hI.4 hI.8 15.59176.92YesNo600
9IV.5 hI.8 14.5597.45NoNo000
10VII.5 VII_VIII.1 79.92764.87YesYes000
11II.4 VII.5 31.47063.77NoYes000
12II.4 X.3 30.79974.61NoYes000
13I_II.2 X.3 21.17383.23NoYes000
14I_II.2 I_II.4 20.41874.42NoYes000
15II.1 II.2 13.75394.85YesNo000
16V.5 VII.5 47.539711.8NoYes000
17V.5 VI.13 46.84083.21NoNo000
18V.3 VI.13 45.44924.81YesNo000
19I_II.4 X.1 11.67284.42YesNo000
20II.1 IV_V.5 17.74474.5YesNo000
21IX.5 X.9 30.12899.93YesYes000
22III_IV.1 X.9 29.685817.97NoYes200
23III_IV.6 VII_VIII.3 76.851110.49NoNo000
24III_IV.1 X_XI.1 99.38849.14NoNo000
25IV_V.2 IV_V.5 14.802313.57NoNo000
26V.3 VI_hI.1 34.47535.05YesNo000
27VI_hI.1 VI_hI.2 31.82638.34NoNo000
28VI.12 VI_hI.2 30.94013.16NoNo000
29V.4 VI.12 29.1995.64YesNo000
30V.4 VI.10 20.39389.26YesYes100
31IX_X.12 X.1 10.37797.13NoNo000
32V.6 VI.10 13.02073.88YesYes100
33IX.5 V.9 30.76239.78YesNo000
34V.9 VI.6 29.82626.35NoNo000
35V.11 VI.6 28.88394.87YesNo000
36VII_VIII.7 X.9 23.71062.82NoYes200
37VI.7 VII_VIII.7 11.87877.03YesNo200
38VII_VIII.4 VII_VIII.7 10.39354.93NoNo200
39Lariat_Back.6 X_XI.1 99.1176.86NoNo000
40Lariat_Back.6 XIX.11 98.90485.01NoYes000
41Lariat_Back.4 XIX.11 76.4865.27NoYes000
42Lariat_Back.4 XVIII.6 76.28943.82NoYes000
43XIX.10 XVIII.6 73.78396.19YesYes300
44XIX.10 XVIII.8 38.74386.28YesNo000
45XV.9 XVIII.8 35.60494.61YesNo000
46XV.9 XVI.7 35.33653.21YesNo000
47Lariat_Back.1 XVI.7 12.20014.47NoNo000
48Lariat.5 Lariat_Back.1 11.27655.54YesNo000
49Lariat.8 XVI.7 22.29715.91NoNo000
50Lariat.11 Lariat.8 21.34239.64NoNo000
51Lariat.11 Lariat.14 20.41877.52NoNo000
52XIII.3 XIX.10 29.64844.13YesYes300
53XIII.1 XIX.11 23.142711.63YesYes1100
54XI.1 XIII.1 22.13174.72YesYes000
55XI.1 XII_XIII.1 20.992911.49YesNo000
56XIII.3 XIV.3 23.21765.56YesYes300
57XIV.3 XVII.7 44.83141.75YesNo000
58XIV.5 XVII.7 43.14969.42NoNo000
59XIV.5 XVII.5 39.88581.57NoNo000
60XIV.7 XVII.5 38.25397.85NoNo000
61XIV.2 XIX.10 26.97433.77YesYes300
62XIV.2 XIV.3 23.02723.39YesYes300
63XII_XIII.1 XIV.4 20.8154.47NoNo000
64XIV.4 XV.7 20.02564.81NoNo000
65XV.7 XVII.8 20.96482.98NoNo000
66XVII.8 XVI_XVII.1 19.27992.95NoNo000
67XV.5 XVI_XVII.1 17.63243.04NoNo000
68XV.5 XVIII.12 16.82425.71NoNo000
69XII.6 XVIII.12 16.02554.15NoNo000
70XII.6 XIV.6 15.23922.98NoNo000
71XIV.7 XIV.9 33.34891.57NoYes000
72XIV.9 XIV_XV.2 26.77154.39YesNo000
73XII.3 XIV_XV.2 25.13034.89NoNo000
74XII.2 XII.3 21.86031.67YesNo000
75XII.2 XIV_XV.4 16.621412.44YesNo000
76XIV_XV.4 XI_XII.2 14.79925.89NoNo000
77Lariat.14 XVI.5 20.10981.45NoNo000
78XVI.5 XVI.6 19.10511.67NoNo000
79XV.10 XVI.6 18.09423.14YesNo000
80XIV_XV.5 XI_XII.2 12.97081.53NoNo000
81XIV_XV.5 XVIII_XIX.4 11.13612.48NoNo000
82III_IV.1 III_IV.6 69.77757.3NoNo200

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 3.04
Number of Linked Nodes 323
Number of Links 353
Number of Hubs 43
Number of Links mediated by Hubs 159
Number of Communities 11
Number of Nodes involved in Communities 55
Number of Links involved in Communities 69
Path Summary
Number Of Nodes in MetaPath 83
Number Of Links MetaPath 82
Number of Shortest Paths 62513
Length Of Smallest Path 3
Average Path Length 18.5868
Length of Longest Path 45
Minimum Path Force 1.2
Average Path Force 5.98186
Maximum Path Force 16
Minimum Path Correlation 0.7
Average Path Correlation 0.953798
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.7027
Average % Of Corr. Nodes 58.2508
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 33.7655
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobLMAywz.zip