Color Average Interaction Strength
      0 < i.s. ≤ 1
      1 < i.s. ≤ 2
      2 < i.s. ≤ 3
      3 < i.s. ≤ 4
      4 < i.s. ≤ 5
      5 < i.s. ≤ 6
      6 < i.s. ≤ 7
      7 < i.s. ≤ 8
      8 < i.s. ≤ 9
      9 < i.s. ≤ 10
Index Hub Avg Force Num Of Links Community Value
1II.4 5.334500
2III.4 6.432500
3IV_V.4 9.5175400
4V.3 8.395450
5V.10 6.07450
6V.11 5.884500
7V.12 6.56167600
8Finger.3 6.134500
9VI.2 5.275400
10VI.6 5.6400
11hI.3 6.55400
12hI.10 2.505400
13VII.4 6.8225400
14VII.6 7.28167600
15VII_VIII.3 7.1450
16VII_VIII.6 5.48400
17VII_VIII.7 4.67420
18Middle.2 4.366520
19Middle.6 7.64500
20X.7 10.01500
21X.10 6.31500
22XII.4 7.065400
23XIII.2 11.8675400
24XIII.3 4.965400
25XIV.1 9.285460
26XIV_XV.4 5.776560
27XV.4 4.93400
28XV.9 5.21400
29XV.10 6.8725400
30XV.11 9.01500
31XVI.2 6.16833600
32XVI.6 5.26400
33XVI_XVII.2 8.208500
34XVI_XVII.4 6.38460
35XVII.3 6.86400
36XVII.5 12.04400
37XVII.7 9.24833600
38XVII.9 4.57400
39Lariat.3 3.98400
40Lariat.18 4.7025400
41XVIII.3 4.192570
42XVIII.5 7.27570
43XVIII.11 6.085420
44XIX.1 3.6475400
45XIX.4 4.8825400
46XIX.11 4.3775400

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Force: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2
1VI_hI.10 VI_hI.9 13.37541.95NoNo000
2VI_hI.7 VI_hI.9 14.67211.95NoNo000
3VII.5 VI_hI.7 15.86575.78NoNo1200
4VII.5 VI_hI.8 19.77952.14NoNo000
5VI_hI.2 VI_hI.8 21.03665.76NoNo000
6VI_hI.1 VI_hI.2 22.28571.95NoNo000
7VI.13 VI_hI.1 22.62277.22NoNo000
8VI.13 VII.2 22.642615.84NoNo000
9VII.2 hI_VII.3 23.63393.58NoNo000
10hI_VII.1 hI_VII.3 25.60873.18NoNo000
11hI.10 hI_VII.1 26.59211.71YesNo000
12II.4 hI.10 29.85172.34YesYes000
13I.3 II.4 60.96842.52NoYes000
14I.3 hI.2 62.08264.47NoNo000
15II_III.1 hI.2 64.32711.71NoNo000
16II_III.1 II_III.2 65.45321.74NoNo000
17III_IV.6 II_III.2 48.20378.3NoNo000
18III.3 III_IV.6 46.5587.3NoNo600
19III.3 X.9 49.98413.21NoNo000
20X.7 X.9 50.50366.54YesNo000
21III.2 II_III.2 43.53646.2NoNo000
22III.2 IV.1 16.868911.8NoNo000
23IV.1 VII.6 16.8573.93NoYes000
24V.6 VII.6 12.221410.96NoYes000
25II.4 IV.6 34.70143.52YesNo000
26IV.6 IV_V.1 33.12715.43NoNo000
27IV_V.1 IV_V.2 31.54496.44NoNo000
28IV_V.2 IV_V.4 29.954816.69NoYes000
29VII.4 VII.6 10.7824.29YesYes200
30III.2 X.6 32.15167.54NoNo000
31IX.4 X.6 32.58393.77NoNo000
32IX.4 X.8 27.11169.93NoNo000
33III.4 X.8 15.56036.91YesNo000
34III.4 X.10 15.413613.05YesYes000
35VII_VIII.8 X.8 10.48858.08NoNo000
36V.6 VI.6 12.32453.65NoYes000
37IX.4 V.8 19.208511.17NoNo000
38IV_V.4 IV_V.8 15.30652.06YesNo000
39V.1 VI_hI.1 24.89115.06NoNo000
40V.1 V.3 23.340511.17NoYes800
41IX.9 V.3 27.36934.29NoYes000
42IX_X.3 V.3 12.95514.61NoYes000
43V.8 VI.5 11.34513.17NoNo000
44IX.7 IX.9 27.71833.21NoNo000
45IX.7 X.3 28.305226.66NoNo000
46IX.5 X.3 29.593913.96NoNo000
47Finger.5 IX.5 30.90255.3NoNo000
48Finger.5 IX.3 30.35934.07NoNo000
49IX.3 V.11 30.98989.53NoYes000
50IX.1 V.11 13.78384.5NoYes000
51IX.1 V.10 12.62193.01NoYes000
52Lariat.18 V.11 38.42893.71YesYes1000
53Finger.3 Middle.10 22.11914.53YesNo000
54VI.5 VII_VIII.7 12.7333.28NoYes000
55VII_VIII.6 VII_VIII.7 26.51283.28YesYes000
56IX.2 VII_VIII.7 32.55618.84NoYes000
57IX.2 VIII.1 32.25473.21NoNo000
58Lariat.18 VIII.2 67.15844.5YesNo000
59Lariat.17 VIII.2 67.66993.64NoNo000
60Lariat.17 Lariat.24 68.18943.64NoNo000
61Lariat.15 Lariat.24 65.37394.42NoNo000
62Lariat.15 Lariat.4 65.27485.54NoNo000
63Lariat.26 Lariat.4 65.32245.54NoNo000
64Lariat.26 XVIII.5 20.60435.86NoYes000
65XVIII.3 XVIII.5 14.24783.79YesYes2000
66XVIII.1 XVIII.3 32.28654.61NoYes000
67VIII.1 XVIII.1 32.14776.14NoNo000
68Middle.10 Middle.2 21.00881.87NoYes000
69Middle.2 XVI.2 11.63455.56YesYes100
70Lariat.16 Lariat.24 36.32335.78NoNo000
71X.10 XIX.11 20.39024.08YesYes000
72XIII.1 XIX.11 19.58135.65NoYes000
73XIII.1 XIII.3 19.54164.69NoYes000
74XIX.8 XVIII.5 29.25296.19NoYes000
75XIV.1 XIX.8 28.25767.31YesNo000
76XIII.2 XIV.1 27.690522.27YesYes000
77XIII.3 XIII_XIV.3 20.96524.49YesNo000
78Lariat.26 XVI.6 46.81187.45NoYes000
79Lariat.13 XVI.6 54.54444.47NoYes000
80Lariat.13 XVI.4 1003.17NoNo000
81XVI.4 XVI.5 98.81835.65NoNo000
82XV.9 XVI.5 97.62874.32YesNo000
83XV.9 XVIII.8 83.38097.43YesNo000
84XIX.3 XVIII.8 82.3347.65NoNo000
85XIX.3 XVIII.10 81.02156.12NoNo000
86XIX.1 XVIII.10 79.6974.15YesNo000
87XIX.1 XVIII.13 70.20382.92YesNo000
88XIV_XV.4 XVIII.13 68.81594.55YesNo000
89XI.9 XIV_XV.4 60.3229.87NoYes000
90XI.7 XI.9 58.87865.14NoNo000
91XI.7 XIX.2 57.42724.15NoNo000
92XIX.2 XVIII.11 55.9684.47NoYes000
93XV.4 XVIII.11 27.37335.71YesYes000
94XV.4 XVII.7 18.05466.04YesYes300
95XV.6 XVII.7 12.205612.62NoYes000
96XIV.3 XV.6 10.49254.81NoNo000
97XII.5 XVIII.11 14.82279.69NoYes000
98XII.5 XIX.4 11.51567.45NoYes1500
99XIII.2 XII_XIII.1 13.40319.2YesNo000
100XII_XIII.1 XIV.2 11.511610.77NoNo000
101Lariat.16 Lariat.25 21.15169.42NoNo000
102Lariat.25 XIII_XIV.1 21.004812.75NoNo000
103XIII_XIV.1 XIX.10 20.96916.43NoNo000
104Lariat.2 XIV.1 11.09923.28NoYes000
105XV.8 XVI.6 14.54123.21NoYes000
106XV.8 XVII.9 11.99544.61NoYes1700
107XV.1 XVIII.11 13.15334.47NoYes000
108XV.1 XVI_XVII.4 11.50779.62NoYes000
109XV.11 XV.9 12.80835.14YesYes000
110XV.10 XVIII.5 27.853114.65YesYes2000
111Lariat.16 X.7 54.389714.29NoYes000
112Finger.3 Lariat.18 27.16714.05YesYes1000
113XIX.10 XVIII.5 21.06835.86NoYes000
114Lariat.13 XV.10 48.61613.99NoYes000
115XIII.2 XIII_XIV.3 20.338611.22YesNo1300
116XIV.1 XVII.9 11.87254.28YesYes000
117VI.6 VII_VIII.6 15.23917.31YesYes900
118XV.10 XVIII.3 23.09074.3YesYes2000

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Force Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Force: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 3.17
Number of Linked Nodes 327
Number of Links 375
Number of Hubs 46
Number of Links mediated by Hubs 175
Number of Communities 20
Number of Nodes involved in Communities 72
Number of Links involved in Communities 84
Path Summary
Number Of Nodes in MetaPath 119
Number Of Links MetaPath 118
Number of Shortest Paths 64957
Length Of Smallest Path 3
Average Path Length 19.0605
Length of Longest Path 49
Minimum Path Force 1.21
Average Path Force 6.10755
Maximum Path Force 20.31
Minimum Path Correlation 0.7
Average Path Correlation 0.953494
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.22222
Average % Of Corr. Nodes 58.7505
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 29.1971
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobznxE0F.zip