Orange: nodes, hubs and links specific of 5ht1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht1_off Avg Int. Strength 5ht1_on Avg Int. Strength 5ht1_off Num Of Links 5ht1_on Num Of Links ConSurf
1NT 5ht1_off17.62171.24612
21x52 5ht1_off4.54251.86991437
33x28 5ht1_off7.768.20417536
43x32 5ht1_off10.272510.1623438
53x40 5ht1_off6.235.01815438
63x49 5ht1_off7.7857.25139439
73x52 5ht1_off11.1758.45194435
84x50 5ht1_off6.2056.72741439
95x62 5ht1_off4.36755.06111436
105x64 5ht1_off5.54751.62416
116x31 5ht1_off6.371.15708426
126x41 5ht1_off3.77253.79111428
136x49 5ht1_off4.58754.21157436
146x58 5ht1_off5.2857.47361414
157x45 5ht1_off8.739.49694439
167x48 5ht1_off3.67253.54861426
172x50 Shared5.865.84544559
182x56 Shared6.97754.47139447
192x57 Shared7.48754.10287467
20E1x50 Shared8.414297.38505768
213x41 Shared8.096.07889546
223x42 Shared9.0226.74255567
233x51 Shared6.117.56478458
24I2x53 Shared11.2949.61014548
25E2 Shared9.836.794925104
265x47 Shared11.9549.58422558
275x48 Shared6.9564.59042546
285x58 Shared4.075.14931569
296x44 Shared6.4745.01567559
306x48 Shared8.051436.58156787
316x51 Shared9.2385.60676568
326x52 Shared13.9949.86215547
337x37 Shared6.25753.83917446
347x39 Shared9.187146.35444776
357x42 Shared6.356.16815767
367x52 Shared2.6943.27933558
378x50 Shared5.1156.80853478
38Lig Shared7.301547.7569913120
391x39 5ht1_on16.0456.30944246
40I1x50 5ht1_on7.1956.37118248
412x46 5ht1_on4.114.79089259
42I2x57 5ht1_on10.84337.25822357
435x66 5ht1_on8.085.26438346
445x69 5ht1_on3.942.20468265
456x54 5ht1_on4.256673.7725344
46E3 5ht1_on04.21162064
477x49 5ht1_on10.1757.33267259
487x53 5ht1_on11.7355.21324269
498x54 5ht1_on3.073.79856357
50I3 5ht1_on03.64312040
   
Orange: nodes, hubs and links specific of 5ht1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht1_off Recurrence 5ht1_on Recurrence 5ht1_off Hub1? 5ht1_on Hub1? 5ht1_off Hub2? 5ht1_on Hub2? ConSurf1 ConSurf2
11x29 1x32 5ht1_off10.80650NoNoNoNo33
21x36 2x65 5ht1_off25.06412.00705NoNoNoNo66
31x36 2x61 5ht1_off26.47780NoNoNoNo67
42x61 7x39 5ht1_off27.62991.1001NoNoYesYes76
52x57 7x39 5ht1_off16.34050.373698YesYesYesYes76
61x46 2x57 5ht1_off13.75463.93853NoNoYesYes77
77x53 8x50 5ht1_off30.15550NoYesYesYes98
82x43 7x53 5ht1_off31.3780NoNoNoYes89
92x40 2x43 5ht1_off32.8420NoNoNoNo98
102x37 2x40 5ht1_off37.09822.33456NoNoNoNo89
112x37 2x39 5ht1_off38.49680NoNoNoNo88
122x39 3x50 5ht1_off39.66390NoNoNoNo89
133x49 3x50 5ht1_off42.4360YesNoNoNo99
143x49 I2x53 5ht1_off45.78169.89671YesNoYesYes98
155x53 5x57 5ht1_off81.92380NoNoNoNo76
163x44 5x53 5ht1_off82.94011.54518NoNoNoNo77
173x41 3x44 5ht1_off1003.08616YesYesNoNo67
183x41 5x50 5ht1_off88.76099.9303YesYesNoNo69
193x40 Lig 5ht1_off73.46680YesNoYesYes80
203x38 4x53 5ht1_off22.28710NoNoNoNo88
213x37 4x53 5ht1_off27.17211.478NoNoNoNo78
223x37 Lig 5ht1_off29.52668.67064NoNoYesYes70
233x42 4x50 5ht1_off13.48290YesYesYesNo79
243x38 4x50 5ht1_off12.72323.27931NoNoYesNo89
253x42 4x49 5ht1_off22.46315.03443YesYesNoNo77
263x41 4x49 5ht1_off25.73834.96305YesYesNoNo67
273x43 6x44 5ht1_off21.57270NoNoYesYes89
283x40 6x44 5ht1_off27.06146.00857YesNoYesYes89
296x44 7x45 5ht1_off11.83280YesYesYesNo99
306x48 7x42 5ht1_off15.82230YesYesYesYes77
312x60 3x28 5ht1_off26.16590NoNoYesNo66
32E1x50 E1x52 5ht1_off11.45047.12546YesYesNoNo86
333x30 4x61 5ht1_off15.9280NoNoNoNo77
343x30 4x57 5ht1_off18.26234.4172NoNoNoNo77
353x34 4x57 5ht1_off20.58162.9518NoNoNoNo67
363x34 4x53 5ht1_off29.7580NoNoNoNo68
373x40 5x47 5ht1_off11.57620YesNoYesYes88
383x44 5x54 5ht1_off27.46890NoNoNoNo78
394x63 E2 5ht1_off14.87150NoNoYesYes64
404x63 5x36 5ht1_off11.46051.98186NoNoNoNo66
415x54 6x41 5ht1_off25.98980NoNoYesNo88
425x58 6x41 5ht1_off19.94773.43467YesYesYesNo98
435x58 5x62 5ht1_off13.99610YesYesYesNo96
443x43 6x40 5ht1_off14.24760NoNoNoNo88
456x51 Lig 5ht1_off17.73419.04434YesYesYesYes80
466x54 7x34 5ht1_off15.1181.17568NoYesNoNo44
476x51 7x34 5ht1_off29.85360YesYesNoNo84
486x58 7x34 5ht1_off13.13580YesNoNoNo44
496x40 7x52 5ht1_off10.61533.92593NoNoYesYes88
502x60 7x42 5ht1_off23.30831.0875NoNoYesYes67
511x32 2x65 Shared20.792917.3455NoNoNoNo36
521x50 2x50 Shared14.3633100NoNoYesYes99
533x52 I2x53 Shared63.188670.2763YesNoYesYes58
543x51 3x52 Shared68.113937.374YesYesYesNo85
553x51 5x57 Shared79.795756.6216YesYesNoNo86
563x40 5x50 Shared90.204813.2432YesNoNoNo89
577x42 Lig Shared64.743260.8498YesYesYesYes70
587x39 7x42 Shared36.947212.8065YesYesYesYes67
597x54 8x50 Shared15.138149.7145NoNoYesYes78
607x54 8x54 Shared10.640436.3789NoNoNoYes77
612x38 I2x57 Shared14.267727.4731NoNoNoYes67
62I2x53 I2x57 Shared14.177237.1851YesYesNoYes87
637x45 7x49 Shared10.504657.9442YesNoNoYes99
642x56 7x42 Shared25.864142.7528YesYesYesYes77
653x28 E1x50 Shared54.786970.4316YesNoYesYes68
662x63 E1x50 Shared25.446555.4417NoNoYesYes68
672x63 E2 Shared21.663253.2373NoNoYesYes64
682x56 3x28 Shared42.964274.2694YesYesYesNo76
692x56 3x32 Shared19.414439.6792YesYesYesNo78
703x32 Lig Shared19.967840.4056YesNoYesYes80
713x33 Lig 5ht1_on1.5143110.1948NoNoYesYes60
722x50 7x49 5ht1_on9.5537683.7042YesYesNoYes99
736x48 7x45 5ht1_on9.1814758.087YesYesYesNo79
746x48 Lig 5ht1_on3.1342895.7969YesYesYesYes70
751x50 7x50 5ht1_on5.4585794.0922NoNoNoNo99
761x52 8x54 5ht1_on0.11571218.0215YesNoNoYes77
771x53 7x54 5ht1_on088.1088NoNoNoNo97
781x53 7x50 5ht1_on092.1061NoNoNoNo99
791x57 8x50 5ht1_on011.6476NoNoYesYes88
808x50 I1x50 5ht1_on013.8016YesYesNoYes88
818x47 8x50 5ht1_on8.1149117.9039NoNoYesYes98
822x41 4x39 5ht1_on0.070433210.5769NoNoNoNo53
832x38 4x39 5ht1_on8.0696324.5675NoNoNoNo63
843x48 3x52 5ht1_on1.6451236.3579NoNoYesNo65
853x48 5x57 5ht1_on037.9619NoNoNoNo66
863x47 5x57 5ht1_on1.6451295.9397NoNoNoNo96
873x47 5x58 5ht1_on097.3841NoNoYesYes99
885x54 5x58 5ht1_on068.3994NoNoYesYes89
895x54 6x44 5ht1_on068.202NoNoYesYes89
906x44 6x48 5ht1_on063.6421YesYesYesYes97
912x46 3x42 5ht1_on017.6184NoYesYesYes97
922x46 3x46 5ht1_on027.1498NoYesNoNo99
93E1x49 E2 5ht1_on028.4725NoNoYesYes34
947x49 7x53 5ht1_on054.2954NoYesNoYes99
954x41 I2x53 5ht1_on1.3935720.5114NoNoYesYes68
965x47 6x52 5ht1_on6.0119713.9528YesYesYesYes87
975x47 5x48 5ht1_on3.9492912.2985YesYesYesYes86
985x58 6x37 5ht1_on055.1436YesYesNoNo98
995x58 6x40 5ht1_on027.7922YesYesNoNo98
1006x40 7x53 5ht1_on023.8873NoNoNoYes89
1015x62 6x37 5ht1_on051.7299YesNoNoNo68
1025x62 5x66 5ht1_on4.6133748.3456YesNoNoYes66
1035x66 5x70 5ht1_on011.824NoYesNoNo60
1045x66 6x30 5ht1_on031.3991NoYesNoNo68
1055x69 6x30 5ht1_on030.1772NoYesNoNo58
1066x51 6x54 5ht1_on022.4681YesYesNoYes84
1076x54 7x37 5ht1_on6.8068610.0815NoYesYesYes46
1086x54 E3 5ht1_on010.0857NoYesNoYes44
1098x47 8x48 5ht1_on011.1732NoNoNoNo96
1104x41 I2x56 5ht1_on010.5727NoNoNoNo65
1112x65 2x66 5ht1_on021.6199NoNoNoNo65
1122x66 E1x49 5ht1_on023.9209NoNoNoNo53
1135x67 5x70 5ht1_on010.2662NoNoNoNo50
1144x38 4x39 5ht1_on6.5351910.5769NoNoNoNo83
1151x49 1x52 5ht1_on013.9528NoNoYesNo87
1161x32 1x33 5ht1_on011.0808NoNoNoNo35
1175x69 6x27 5ht1_on1.4036316.4217NoYesNoNo55
1183x50 5x58 5ht1_on049.135NoNoYesYes99
1193x50 7x53 5ht1_on023.354NoNoNoYes99
1206x23 6x27 5ht1_on014.549NoNoNoNo05
1216x20 6x23 5ht1_on011.3159NoNoNoNo00
1226x48 6x51 5ht1_on8.3312415.4098YesYesYesYes78
1235x47 6x44 5ht1_on011.1354YesYesYesYes89
1242x46 2x50 5ht1_on7.9388225.9699NoYesYesYes99
1253x46 3x50 5ht1_on025.9279NoNoNoNo99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared13.157.220831121
2x567x42Shared5.053.961671121
2x577x39Shared5.825.4850122
2x607x39Shared8.654.933051122
2x607x42Shared6.364.216671121
3x323x365ht1_off4.6701111
3x327x42Shared11.499.673061111
3x32LigShared11.7813.59311110
3x33LigShared4.7710.64940010
3x366x48Shared3.925.366941111
3x36LigShared5.39.077221110
3x374x53Shared6.44.726110012
3x375x4615ht1_off5.0300011
3x37LigShared4.923.245280010
3x405x475ht1_off3.7700112
3x405x50Shared5.083.342780112
3x406x44Shared11.34.534720112
3x40Lig5ht1_off4.7700110
E2x52LigShared3.987.983610010
5x445x48Shared6.243.817220112
5x44Lig5ht1_off3.9400110
5x475x48Shared11.355.070831122
5x476x52Shared33.2219.49721121
5x486x525ht1_off6.1901121
5x486x56Shared4.694.786391122
6x447x455ht1_off8.4600122
6x486x51Shared9.024.593061111
6x486x52Shared6.017.348611111
6x487x41Shared12.678.206111112
6x487x425ht1_off3.8601111
6x487x45Shared3.3910.42111112
6x48LigShared17.493.99751110
6x516x52Shared10.723.634171111
6x517x345ht1_off3.2201112
6x517x38Shared7.784.218331112
6x51LigShared15.4513.77831110
6x52LigShared13.838.968611110
6x547x34Shared5.023.10250122
7x387x425ht1_off6.2400021
7x397x42Shared6.758.949171121
7x42LigShared4.76.31751110
5x43LigShared3.015.050830010
6x556x565ht1_off300112
5x40Lig5ht1_off0.9800010
2x577x425ht1_on03.890830121
3x334x575ht1_on06.100280012
3x374x565ht1_on05.953330012
3x406x485ht1_on07.176950111
5x395x435ht1_on06.182220021
5x406x595ht1_on04.825560012
5x446x565ht1_on06.346670112
5x476x445ht1_on07.651391122
6x446x485ht1_on05.542220121
6x516x555ht1_on04.21251111
6x55Lig5ht1_on07.340280110
6x516x545ht1_on03.204171112
3x29E2x525ht1_on03.16750021
5x461Lig5ht1_on03.082220010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht1_off 5ht1b_off
5ht1_on 5ht1a_on
5ht1d_on
5ht1e_on
5ht1f_on
Network Difference
Value 5ht1_off 5ht1_on
Imin 3.17 3.22917
Number of Linked Nodes 241 279
Number of Specific Nodes 0 (0.00%) 38  (13.62%)
Number of Shared Nodes 241 (100.00%) 241  (86.38%)
Number of Links 282 316
Number of Specific Links 125 (44.33%) 159  (50.32%)
Number of Shared Links 157 (55.67%) 157  (49.68%)
Number of Hubs 38 34
Number of Specific Hubs 16 (42.11%) 12  (35.29%)
Number of Shared Hubs 22 (57.89%) 22  (64.71%)
Average % Shared Neighbours (Jaccard) 35.50
Average % Shared Neighbours (Otsuka) 44.48
Average % Shared Neighbours (Overlap Coefficient) 53.11
Average % Shared Cliques (k3-6) 83.33
Graphlets Similarity 0.620301
Paths Difference
Value 5ht1_off 5ht1_on
Number Of Nodes in MetaPath 69 72
Specific Nodes in MetaPath 31 (44.93%) 34  (47.22%)
Shared Nodes in MetaPath 241 (100.00%) 241  (100.00%)
Number Of Links MetaPath 70 75
Specific Links in MetaPath 50 (71.43%) 55  (73.33%)
Shared Links in MetaPath 157 (55.67%) 157  (55.67%)
Number of Shortest Paths 46833 67270
Length Of Smallest Path 3 3
Average Path Length 13.348 14.0249
Length of Longest Path 37 29
Minimum Path Strength 1.435 0.422222
Average Path Strength 6.43147 5.55746
Maximum Path Strength 23.525 14.3693
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.927091 0.917672
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.44828 3.84615
Average % Of Corr. Nodes 50.1046 40.7084
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 44.7762 41.9655
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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