Orange: nodes, hubs and links specific of 5ht2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht2_off Avg Int. Strength 5ht2_on Avg Int. Strength 5ht2_off Num Of Links 5ht2_on Num Of Links ConSurf
11x35 5ht2_off00403
21x60 5ht2_off16.66670436
3I1x50 5ht2_off66.66670438
42x56 5ht2_off00438
5E1x50 5ht2_off1000737
63x50 5ht2_off33.33330639
74x39 5ht2_off00424
84x61 5ht2_off050436
95x36 5ht2_off33.33330435
105x41 5ht2_off00426
115x50 5ht2_off500439
125x58 5ht2_off00439
136x27 5ht2_off00435
146x44 5ht2_off94.44450629
157x49 5ht2_off16.66670439
167x56 5ht2_off33.33330427
178x54 5ht2_off66.66670426
188x57 5ht2_off55.55560524
19CT 5ht2_off38.88890805
20NT 5ht2_off33.33330500
212x42 Shared33.333350448
222x50 Shared66.666750459
232x57 Shared10025748
243x35 Shared66.6667100547
253x42 Shared66.6667100458
264x50 Shared66.666750549
27E2 Shared10010014103
286x30 Shared00448
296x41 Shared88.88890648
306x48 Shared100100558
316x51 Shared10025647
326x52 Shared94.444575547
337x37 Shared00445
347x39 Shared83.333350546
357x42 Shared100100657
368x50 Shared10050868
37Lig Shared1001001190
381x39 5ht2_on00246
391x50 5ht2_on025349
402x53 5ht2_on050347
413x30 5ht2_on00146
423x51 5ht2_on050348
43I2x53 5ht2_on00147
444x41 5ht2_on00346
455x47 5ht2_on5025348
465x65 5ht2_on00358
476x47 5ht2_on00358
487x53 5ht2_on5075259
497x54 5ht2_on00347
50E3 5ht2_on22.222250243
   
Orange: nodes, hubs and links specific of 5ht2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht2_off Recurrence 5ht2_on Recurrence 5ht2_off Hub1? 5ht2_on Hub1? 5ht2_off Hub2? 5ht2_on Hub2? ConSurf1 ConSurf2
11x39 7x39 5ht2_off10.72424.45629NoYesYesYes66
21x53 8x54 5ht2_off90.93320NoNoYesNo96
38x50 8x54 5ht2_off78.69790YesYesYesNo86
48x50 I1x50 5ht2_off54.38996.17982YesYesYesNo88
51x60 I1x50 5ht2_off49.26615.11372YesNoYesNo68
61x60 8x57 5ht2_off20.39210YesNoYesNo64
71x55 8x57 5ht2_off14.94343.58209NoNoYesNo44
81x51 1x55 5ht2_off12.86364.91116NoNoNoNo34
96x48 Lig 5ht2_off67.13430YesYesYesYes80
106x44 7x49 5ht2_off33.46150YesNoYesNo99
111x57 8x50 5ht2_off10.70252.64392NoNoYesYes78
121x60 CT 5ht2_off22.99730YesNoYesNo65
13CT I1x48 5ht2_off18.76180YesNoNoNo56
14I1x48 I1x51 5ht2_off16.72530NoNoNoNo67
152x41 I1x51 5ht2_off14.65092.69012NoNoNoNo47
163x35 4x50 5ht2_off17.21820YesYesYesYes79
172x45 4x46 5ht2_off12.13781.34684NoNoNoNo98
182x42 4x46 5ht2_off11.76950YesYesNoNo88
193x43 6x44 5ht2_off46.40630NoNoYesNo89
203x43 6x41 5ht2_off65.25480NoNoYesYes88
213x46 6x41 5ht2_off17.18570NoNoYesYes98
223x39 6x44 5ht2_off31.0080NoNoYesNo99
232x56 3x28 5ht2_off20.21340YesNoNoNo85
242x64 7x39 5ht2_off18.87028.43994NoNoYesYes56
253x28 E1x50 5ht2_off16.91490NoNoYesNo57
26E1x50 E1x51 5ht2_off13.48640YesNoNoNo73
272x66 E1x51 5ht2_off10.62671.15849NoNoNoNo43
28E2x51 Lig 5ht2_off30.2930NoNoYesYes40
29E2 E2x51 5ht2_off29.03641.37527YesYesNoNo34
303x33 Lig 5ht2_off20.99331.39303NoNoYesYes60
313x33 4x61 5ht2_off16.04830NoNoYesNo66
323x38 4x50 5ht2_off12.08362.69012NoNoYesYes89
333x38 4x53 5ht2_off10.09591.34684NoNoNoNo88
343x40 6x44 5ht2_off21.34540NoNoYesNo89
353x40 5x50 5ht2_off19.59594.17555NoNoYesNo89
366x37 6x41 5ht2_off43.62780NoNoYesYes88
373x50 6x37 5ht2_off42.32251.18337YesNoNoNo98
383x50 6x30 5ht2_off36.92250YesNoYesYes98
393x54 6x30 5ht2_off23.00820NoNoYesYes98
403x54 5x65 5ht2_off20.42461.17982NoNoNoYes98
415x61 5x65 5ht2_off16.330NoNoNoYes98
423x51 5x61 5ht2_off14.84591.39659NoYesNoNo89
432x42 3x46 5ht2_off15.98332.91756YesYesNoNo89
442x41 4x39 5ht2_off10.82160NoNoYesNo44
455x47 Lig 5ht2_off19.01640NoYesYesYes80
465x47 5x48 5ht2_off27.8995.52239NoYesNoNo85
475x68 6x30 5ht2_off13.04234.69083NoNoYesYes78
485x68 6x27 5ht2_off11.81280NoNoYesNo75
496x40 7x49 5ht2_off11.55830NoNoYesNo89
501x35 2x64 5ht2_off11.69370YesNoNoNo35
515x48 6x56 5ht2_off21.6921.36461NoNoNoNo55
525x41 6x56 5ht2_off18.94060YesNoNoNo65
532x57 7x42 5ht2_off11.9970YesYesYesYes87
541x50 7x50 5ht2_off45.08482.17129NoYesNoNo99
553x43 7x49 5ht2_off19.72051.17271NoNoYesNo89
562x50 3x39 5ht2_off30.38511.34684YesYesNoNo99
57E1x50 E2 5ht2_off17.98730YesNoYesYes73
586x48 6x51 5ht2_off19.22220YesYesYesYes87
596x48 6x52 5ht2_off13.14520YesYesYesYes87
607x39 7x42 Shared30.450134.9431YesYesYesYes67
612x56 7x42 Shared23.690662.1997YesNoYesYes87
622x53 2x56 Shared35.9963100NoYesYesNo78
632x53 7x46 Shared23.685294.6517NoYesNoNo79
642x50 7x46 Shared23.47493.9765YesYesNoNo99
651x50 2x50 Shared53.241644.6233NoYesYesYes99
661x50 2x47 Shared94.237137.2672NoYesNoNo99
671x53 2x47 Shared92.623133.8451NoNoNoNo99
687x42 Lig Shared28.727753.0775YesYesYesYes70
696x44 6x48 Shared10048.7775YesNoYesYes98
707x49 7x50 Shared46.341317.1393YesNoNoNo99
712x53 3x35 Shared17.499927.4769NoYesYesYes77
722x42 4x45 Shared13.773530.5686YesYesNoNo86
732x46 2x50 Shared10.648342.2566NoNoYesYes99
744x41 4x45 Shared10.328813.7385NoYesNoNo66
754x61 5x39 Shared10.60515.1919YesNoNoNo67
766x51 Lig Shared12.489817.58YesYesYesYes70
775x58 6x41 Shared10.583323.6674YesNoYesYes98
786x51 7x34 Shared28.088629.1578YesYesNoNo73
796x54 7x34 Shared26.577527.5764NoNoNoNo53
806x54 7x37 Shared20.07825.6326NoNoYesYes55
815x47 6x52 Shared11.964569.7761NoYesYesYes87
822x53 2x54 5ht2_on015.7321NoYesNoNo76
832x54 2x57 5ht2_on1.6519514.4598NoNoYesYes68
841x50 2x51 5ht2_on010.1421NoYesNoNo97
852x50 7x50 5ht2_on016.1087YesYesNoNo99
861x53 7x54 5ht2_on032.6617NoNoNoYes97
877x54 8x50 5ht2_on0.92617724.9147NoYesYesYes78
882x46 3x42 5ht2_on9.3321841.2154NoNoYesYes98
892x42 3x42 5ht2_on032.9993YesYesYesYes88
903x49 4x45 5ht2_on1.7277815.6574NoNoNoNo96
913x49 I2x53 5ht2_on015.0888NoNoNoYes97
92I2x53 I2x57 5ht2_on011.4712NoYesNoNo76
932x60 7x39 5ht2_on1.4461425.2452NoNoYesYes76
942x60 3x28 5ht2_on024.5487NoNoNoNo75
953x28 3x29 5ht2_on023.2409NoNoNoNo55
963x29 E2x50 5ht2_on022.5267NoNoNoNo59
973x25 E2x50 5ht2_on0.7636918.479NoNoNoNo99
983x25 E2 5ht2_on1.5544617.7292NoNoYesYes93
993x34 3x35 5ht2_on6.7432223.3831NoNoYesYes67
1003x34 4x57 5ht2_on6.5590620.3127NoNoNoNo67
1013x30 4x57 5ht2_on019.2999NoYesNoNo67
1023x30 4x61 5ht2_on016.1194NoYesYesNo66
1036x52 Lig 5ht2_on1.4028166.9119YesYesYesYes70
1045x47 6x48 5ht2_on063.7527NoYesYesYes88
1057x49 7x53 5ht2_on014.936YesNoNoYes99
1065x54 6x44 5ht2_on047.6546NoNoYesNo89
1073x47 5x54 5ht2_on020.2523NoNoNoNo98
1083x47 5x57 5ht2_on1.5869618.9517NoNoNoNo95
1093x51 5x57 5ht2_on015.0071NoYesNoNo85
1105x54 6x41 5ht2_on9.3863428.7207NoNoYesYes88
1115x58 5x62 5ht2_on1.5869621.0874YesNoNoNo95
1125x62 6x34 5ht2_on019.7939NoNoNoNo57
1135x65 6x34 5ht2_on017.3383NoYesNoNo87
1145x36 E2 5ht2_on5.7845412.3276YesNoYesYes53
1155x36 5x38 5ht2_on2.166511.8586YesNoNoNo53
1165x38 5x39 5ht2_on013.575NoNoNoNo37
1176x40 7x53 5ht2_on011.7235NoNoNoYes89
1186x48 7x45 5ht2_on010.9986YesYesNoNo89
1197x38 7x42 5ht2_on4.9287810.6361NoNoYesYes67
1206x51 7x38 5ht2_on5.4324910.2665YesYesNoNo76
1216x50 7x37 5ht2_on6.7865519.7512NoNoYesYes95
1226x49 6x50 5ht2_on4.5333917.7754NoNoNoNo69
1236x49 6x53 5ht2_on2.269413.8024NoNoNoNo66
1246x53 6x57 5ht2_on011.8053NoNoNoNo64
1258x47 8x50 5ht2_on6.1149311.8621NoNoYesYes98
1265x65 6x30 5ht2_on013.5785NoYesYesYes88
1272x56 3x32 5ht2_on5.3783238.1699YesNoNoNo88
1283x32 Lig 5ht2_on5.638337.9815NoNoYesYes80

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared7.0577810.2251121
2x567x42Shared3.716674.10251121
2x577x395ht2_off5.7505601022
2x577x425ht2_off6.6505601021
3x327x42Shared7.984458.9051111
3x32LigShared16.882212.70251110
3x334x575ht2_off3.5538900012
3x334x615ht2_off3.6066700012
3x33LigShared8.87512.30010
3x36LigShared9.99511.83250010
3x375x461Shared4.861672.840021
3x406x445ht2_off6.1416700022
E2E2Shared28.408322.171322
E2E2x51Shared6.593897.75751321
5x446x52Shared4.913893.96250111
5x475x48Shared6.372787.23751012
5x476x52Shared24.826119.82751011
6x446x48Shared9.242226.51251021
6x447x455ht2_off7.9255601022
6x486x515ht2_off6.2938901011
6x486x525ht2_off5.5122201011
6x487x41Shared12.4354.5751012
6x48Lig5ht2_off10.569401010
6x516x52Shared8.513336.1651111
6x516x555ht2_off7.0483301112
6x517x34Shared4.195562.74251112
6x517x38Shared4.876113.9351111
6x51LigShared11.72399.381110
6x52LigShared12.141710.661110
6x557x345ht2_off4.8827801022
7x387x42Shared6.519445.3651111
7x38LigShared7.177222.72251110
7x397x42Shared10.34446.7551021
7x42LigShared3.983332.88751110
5x47Lig5ht2_off3.8111101010
E2x51Lig5ht2_off3.66501010
5x43Lig5ht2_off1.2816700010
3x406x485ht2_on04.110021
5x461Lig5ht2_on03.8850010
5x475x515ht2_on02.74251012
5x476x485ht2_on03.761011
6x487x455ht2_on06.40751012
5x44Lig5ht2_on03.93250110
5x425x435ht2_on02.20250021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht2_off 5ht2a_off
5ht2b_off
5ht2c_off
5ht2_on 5ht2a_on
5ht2c_on
Network Difference
Value 5ht2_off 5ht2_on
Imin 3.41222 2.6225
Number of Linked Nodes 276 261
Number of Specific Nodes 17 (6.16%) 2  (0.77%)
Number of Shared Nodes 259 (93.84%) 259  (99.23%)
Number of Links 305 280
Number of Specific Links 141 (46.23%) 116  (41.43%)
Number of Shared Links 164 (53.77%) 164  (58.57%)
Number of Hubs 37 30
Number of Specific Hubs 20 (54.05%) 13  (43.33%)
Number of Shared Hubs 17 (45.95%) 17  (56.67%)
Average % Shared Neighbours (Jaccard) 41.80
Average % Shared Neighbours (Otsuka) 51.54
Average % Shared Neighbours (Overlap Coefficient) 61.86
Average % Shared Cliques (k3-6) 56.25
Graphlets Similarity 0.575772
Paths Difference
Value 5ht2_off 5ht2_on
Number Of Nodes in MetaPath 76 67
Specific Nodes in MetaPath 39 (51.32%) 30  (44.78%)
Shared Nodes in MetaPath 259 (93.84%) 259  (93.84%)
Number Of Links MetaPath 81 69
Specific Links in MetaPath 59 (72.84%) 47  (68.12%)
Shared Links in MetaPath 164 (53.77%) 164  (53.77%)
Number of Shortest Paths 47359 48777
Length Of Smallest Path 3 3
Average Path Length 12.4574 15.6174
Length of Longest Path 29 32
Minimum Path Strength 0.240556 0.3675
Average Path Strength 5.60327 5.48222
Maximum Path Strength 16.6697 15.2437
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.918099 0.909765
Maximum Path Correlation 0.99 0.9875
Minimum % Of Corr. Nodes 4 3.57143
Average % Of Corr. Nodes 48.3939 39.6517
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 44.0132 40.9229
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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