Orange: nodes, hubs and links specific of 5ht2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht2_off Avg Int. Strength 5ht2_on Avg Int. Strength 5ht2_off Num Of Links 5ht2_on Num Of Links ConSurf
11x35 5ht2_off2.716172.59413
2I1x50 5ht2_off7.4506710.255428
32x41 5ht2_off4.778535.65333534
42x42 5ht2_off4.173734.05538
52x44 5ht2_off4.0154.505425
63x24 5ht2_off2.96153.955425
73x28 5ht2_off6.740175.95667435
83x50 5ht2_off3.242935.76333539
93x51 5ht2_off6.1584.86438
105x36 5ht2_off6.423338.86425
115x50 5ht2_off5.6285.58333439
126x30 5ht2_off3.152676.26667538
136x41 5ht2_off6.25364.445528
146x44 5ht2_off6.99725.23333539
156x48 5ht2_off8.726936.49538
167x37 5ht2_off6.304834.905425
177x56 5ht2_off2.7396715.73417
188x54 5ht2_off5.71354.43426
198x57 5ht2_off4.983471.03514
20NT 5ht2_off11.61830600
211x50 Shared5.346675.9449
222x50 Shared6.75656.182459
232x57 Shared4.674294.128758
24E1x50 Shared6.771245.45833767
253x35 Shared6.335.2425547
263x42 Shared6.62645.955568
274x50 Shared5.10324.082559
28E2 Shared10.735417.67313103
295x58 Shared4.4147.4625449
306x51 Shared7.081117.3475647
316x52 Shared11.4848.89547
327x39 Shared8.74044.596556
337x42 Shared6.096115.818657
347x53 Shared5.182675.765449
358x50 Shared5.773087.024858
36Lig Shared7.790399.135711270
37E1x52 5ht2_on6.087563.5375345
383x32 5ht2_on10.06388.93348
394x39 5ht2_on5.083114.555344
405x47 5ht2_on12.33766.99368
418x58 5ht2_on2.158674.25146
   
Orange: nodes, hubs and links specific of 5ht2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht2_off Recurrence 5ht2_on Recurrence 5ht2_off Hub1? 5ht2_on Hub1? 5ht2_off Hub2? 5ht2_on Hub2? ConSurf1 ConSurf2
17x39 7x42 5ht2_off31.17099.35532YesYesYesYes67
27x42 Lig 5ht2_off44.18570YesYesYesYes70
36x48 Lig 5ht2_off71.86350YesNoYesYes80
46x44 6x48 5ht2_off97.87790YesNoYesNo98
53x39 6x44 5ht2_off42.97090NoNoYesNo99
62x50 3x39 5ht2_off18.25191.68424YesYesNoNo99
73x43 6x44 5ht2_off1000NoNoYesNo89
87x49 7x53 5ht2_off60.78940NoNoYesYes99
91x53 7x53 5ht2_off12.6720NoNoYesYes99
101x53 8x54 5ht2_off11.72440NoNoYesNo96
111x52 8x54 5ht2_off22.12319.92853NoNoYesNo66
127x53 8x50 5ht2_off46.52960YesYesYesYes98
138x50 8x54 5ht2_off12.83830YesYesYesNo86
141x52 8x57 5ht2_off17.13290NoNoYesNo64
151x57 8x50 5ht2_off15.72666.49636NoNoYesYes78
161x57 2x44 5ht2_off14.6585.01734NoNoYesNo75
172x46 3x39 5ht2_off23.63020NoNoNoNo99
182x42 3x42 5ht2_off14.04816.34775YesNoYesYes88
193x33 Lig 5ht2_off19.77423.27648NoNoYesYes60
203x33 4x57 5ht2_off10.49451.64178NoNoNoNo67
212x64 7x39 5ht2_off22.74311.53563NoNoYesYes56
222x64 E1 5ht2_off12.11750NoNoNoNo53
23E2x51 Lig 5ht2_off28.25240NoNoYesYes40
24E2 E2x51 5ht2_off27.42071.59932YesYesNoNo34
253x33 4x61 5ht2_off11.07920NoNoNoNo66
263x43 6x41 5ht2_off58.24890NoNoYesNo88
273x47 6x41 5ht2_off15.84250NoNoYesNo98
283x47 5x57 5ht2_off14.51181.67716NoNoNoNo95
296x37 6x41 5ht2_off28.95810NoNoYesNo88
303x51 5x57 5ht2_off13.10550YesNoNoNo85
313x50 6x30 5ht2_off23.32780YesNoYesNo98
325x44 6x52 5ht2_off14.16913.34725NoNoYesYes67
335x58 6x41 5ht2_off11.11459.87191YesYesYesNo98
346x40 7x49 5ht2_off11.68910NoNoNoNo89
356x51 7x34 5ht2_off20.86296.64497YesYesNoNo73
366x54 7x34 5ht2_off19.83475.00318NoNoNoNo53
376x54 7x37 5ht2_off15.01083.34725NoNoYesNo55
385x44 6x56 5ht2_off12.76781.67716NoNoNoNo65
396x40 7x52 5ht2_off10.25255.01026NoNoNoNo88
401x35 2x64 5ht2_off11.26570YesNoNoNo35
41E1x50 E2 5ht2_off15.81730YesYesYesYes73
426x48 6x51 5ht2_off14.44630YesNoYesYes87
436x48 6x52 5ht2_off11.26571.29503YesNoYesYes87
441x50 2x50 Shared14.360662.4089YesYesYesYes99
453x43 7x49 Shared69.262649.0907NoNoNoNo89
462x46 3x42 Shared23.524485.132NoNoYesYes98
473x40 6x44 Shared17.294299.9151NoNoYesNo89
483x40 5x50 Shared15.908199.9575NoNoYesNo89
493x50 6x37 Shared27.627439.0064YesNoNoNo98
502x57 7x42 Shared13.206310.2257YesYesYesYes87
517x38 7x42 5ht2_on3.6695436.3881NoNoYesYes67
526x51 7x38 5ht2_on4.3147334.5977YesYesNoNo76
536x51 6x52 5ht2_on1.2450293.1993YesYesYesYes77
545x47 6x52 5ht2_on2.807693.1286NoYesYesYes87
555x47 6x44 5ht2_on097.6152NoYesYesNo89
563x41 5x50 5ht2_on7.3794100NoNoYesNo69
573x41 4x52 5ht2_on5.92268100NoNoNoNo65
584x52 4x56 5ht2_on099.9575NoNoNoNo56
593x37 4x56 5ht2_on2.9285899.8585NoNoNoNo76
603x37 4x53 5ht2_on099.7028NoNoNoNo78
613x38 4x53 5ht2_on1.5978688.7765NoNoNoNo88
623x38 3x42 5ht2_on084.5871NoNoYesYes88
632x46 2x50 5ht2_on1.1290984.7852NoNoYesYes99
641x50 7x50 5ht2_on2.9487455.0067YesYesNoNo99
657x50 7x51 5ht2_on053.8532NoNoNoNo96
667x51 7x55 5ht2_on1.4920152.6856NoNoNoNo65
677x54 7x55 5ht2_on049.0977NoNoNoNo75
687x54 8x50 5ht2_on5.4992745.3613NoNoYesYes78
691x56 8x50 5ht2_on1.4466513.1272NoNoYesYes78
701x56 8x54 5ht2_on011.5349NoNoYesNo76
712x40 8x50 5ht2_on2.5404522.0508NoNoYesYes98
722x37 2x40 5ht2_on1.441619.1848NoNoNoNo79
732x37 2x39 5ht2_on017.6491NoNoNoNo78
742x39 I2x57 5ht2_on016.0923NoNoNoNo86
752x38 I2x57 5ht2_on1.441613.1201NoNoNoNo56
762x38 4x39 5ht2_on011.5349NoNoNoYes54
773x34 4x53 5ht2_on012.5327NoNoNoNo68
783x34 3x35 5ht2_on7.1979411.0466NoNoYesYes67
792x50 7x49 5ht2_on053.8462YesYesNoNo99
802x56 7x42 5ht2_on6.6384421.2582NoNoYesYes87
812x56 3x28 5ht2_on8.5185742.5589NoNoYesNo85
823x28 E1x50 5ht2_on2.298537.8671YesNoYesYes57
83E1x50 E1x52 5ht2_on7.379423.0911YesYesNoYes75
842x62 E1x52 5ht2_on012.9078NoNoNoYes45
852x62 2x66 5ht2_on010.3107NoNoNoNo44
863x32 Lig 5ht2_on5.3228527.4857NoYesYesYes80
875x39 Lig 5ht2_on033.0621NoNoYesYes70
884x61 5x39 5ht2_on8.0699630.5145NoNoNoNo67
893x29 4x61 5ht2_on025.023NoNoNoNo56
903x29 E2x52 5ht2_on023.6784NoNoNoNo54
915x36 E2x52 5ht2_on022.4117YesNoNoNo54
925x36 E2 5ht2_on4.1282320.961YesNoYesYes53
933x43 7x53 5ht2_on047.831NoNoYesYes89
945x54 6x44 5ht2_on020.4586NoNoYesNo89
953x50 7x53 5ht2_on039.983YesNoYesYes99
965x61 6x37 5ht2_on037.8459NoNoNoNo98
973x51 5x61 5ht2_on1.4920136.5013YesNoNoNo89
983x51 3x55 5ht2_on5.9226832.3615YesNoNoNo86
993x55 5x64 5ht2_on022.2065NoNoNoNo66
1003x54 5x64 5ht2_on1.4869720.6992NoNoNoNo96
1013x54 5x65 5ht2_on4.4155519.1777NoNoNoNo98
1025x54 6x41 5ht2_on8.8260511.4712NoNoYesNo88
1035x65 6x30 5ht2_on5.6000816.2692NoNoYesNo88
1045x68 6x30 5ht2_on9.9702613.113NoNoYesNo78
1055x68 6x28 5ht2_on011.5278NoNoNoNo76
1066x51 Lig 5ht2_on8.6899556.2593YesYesYesYes70
1072x56 3x32 5ht2_on4.2391223.7209NoNoNoYes88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared6.911332.921121
2x567x42Shared4.040673.791121
2x577x39Shared6.202673.491122
2x577x42Shared6.144674.791121
3x327x42Shared7.5126710.341111
3x32LigShared15.767318.041110
3x334x57Shared3.715333.390012
3x334x615ht2_off3.6066700012
3x33LigShared7.6446715.140010
3x36LigShared10.8425.870110
3x375x461Shared4.734673.360012
3x37Lig5ht2_off3.83800010
4x605x395ht2_off4.3326700021
4x615x39Shared4.342673.930021
E2E2Shared30.353368.131222
5x36E2Shared12.5845.541222
E2E2x51Shared6.095331.591221
5x365x395ht2_off6.7646701221
5x406x55Shared4.8727.010021
5x446x52Shared4.843.960021
5x475x48Shared6.289339.651112
5x476x52Shared27.14818.221111
6x446x485ht2_off8.7533300021
6x486x515ht2_off6.6826701111
6x486x52Shared5.812678.021111
6x487x41Shared12.28.441112
6x48Lig5ht2_off10.18601110
6x516x52Shared7.716675.361111
6x516x555ht2_off6.52401111
6x517x34Shared4.794.871112
6x517x38Shared4.628673.931111
6x51LigShared12.144715.231110
6x52Lig5ht2_off11.902701110
6x557x345ht2_off4.9433301012
7x387x42Shared4.710676.311111
7x38LigShared7.1944.661110
7x397x42Shared10.0323.861121
7x42Lig5ht2_off4.13601110
E2x51Lig5ht2_off5.00601010
5x47Lig5ht2_off3.5753301110
3x374x56Shared2.330673.040012
5x43Lig5ht2_off1.24800010
3x323x365ht2_on04.421111
3x374x535ht2_on06.40012
5x395x435ht2_on03.010011
5x39Lig5ht2_on02.860010
5x475x515ht2_on03.651112
5x476x445ht2_on03.221112
5x476x485ht2_on03.011111
5x476x495ht2_on04.191112
6x55Lig5ht2_on02.151010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht2_off 5ht2a_off
5ht2b_off
5ht2c_off
5ht2_on 5ht2b_on
Network Difference
Value 5ht2_off 5ht2_on
Imin 3.44133 2.86
Number of Linked Nodes 274 237
Number of Specific Nodes 37 (13.50%) 0  (0.00%)
Number of Shared Nodes 237 (86.50%) 237  (100.00%)
Number of Links 302 246
Number of Specific Links 151 (50.00%) 95  (38.62%)
Number of Shared Links 151 (50.00%) 151  (61.38%)
Number of Hubs 36 21
Number of Specific Hubs 20 (55.56%) 5  (23.81%)
Number of Shared Hubs 16 (44.44%) 16  (76.19%)
Average % Shared Neighbours (Jaccard) 39.88
Average % Shared Neighbours (Otsuka) 48.49
Average % Shared Neighbours (Overlap Coefficient) 56.97
Average % Shared Cliques (k3-6) 54.46
Graphlets Similarity 0.577133
Paths Difference
Value 5ht2_off 5ht2_on
Number Of Nodes in MetaPath 50 64
Specific Nodes in MetaPath 25 (50.00%) 39  (60.94%)
Shared Nodes in MetaPath 237 (86.50%) 237  (86.50%)
Number Of Links MetaPath 50 64
Specific Links in MetaPath 43 (86.00%) 57  (89.06%)
Shared Links in MetaPath 151 (50.00%) 151  (50.00%)
Number of Shortest Paths 41686 27005
Length Of Smallest Path 3 3
Average Path Length 10.8116 18.2785
Length of Longest Path 22 44
Minimum Path Strength 0.613 1.3
Average Path Strength 5.67349 5.76053
Maximum Path Strength 17.4323 16.635
Minimum Path Correlation 0.702667 0.7
Average Path Correlation 0.915166 0.928529
Maximum Path Correlation 0.988667 0.99
Minimum % Of Corr. Nodes 5.88235 2.7027
Average % Of Corr. Nodes 51.5717 52.6367
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 44.9202 27.8116
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5ht2_off_on.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.