Orange: nodes, hubs and links specific of 5ht5a_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht5a_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht5a_off Avg Int. Strength 5ht5a_on Avg Int. Strength 5ht5a_off Num Of Links 5ht5a_on Num Of Links ConSurf
11x49 5ht5a_off6.8425.79111538
21x57 5ht5a_off5.581.37556437
32x46 5ht5a_off5.334.86667439
42x64 5ht5a_off8.51255.81333415
53x41 5ht5a_off9.1657.42333426
63x42 5ht5a_off6.58255.50333437
73x49 5ht5a_off7.62757.71667439
83x50 5ht5a_off6.9155.45667429
93x52 5ht5a_off6.5755.78667434
104x60 5ht5a_off5.78755.24333437
115x36 5ht5a_off4.4884.54778536
125x44 5ht5a_off3.93254.81111436
136x35 5ht5a_off4.09750.886667416
146x41 5ht5a_off4.29752.60167428
156x44 5ht5a_off5.28253.36333429
166x51 5ht5a_off8.451678.075627
177x38 5ht5a_off9.035.055425
187x49 5ht5a_off7.57256.55439
192x42 Shared4.6924.33833548
202x50 Shared7.16.6375449
212x57 Shared6.07253.46417447
22E1x50 Shared7.985716.42933758
233x51 Shared7.18255.90733458
244x38 Shared8.99757.73933458
254x57 Shared4.672.8725448
265x39 Shared6.067.715447
276x48 Shared7.218575.81833768
286x52 Shared10.5487.80333556
297x39 Shared6.705714.54333746
307x42 Shared8.016675.76467657
317x47 Shared5.13.65133556
32Lig Shared7.7847.3283315100
331x47 5ht5a_on3.352.76246
34I1x50 5ht5a_on04.64222060
352x41 5ht5a_on6.235.065344
362x63 5ht5a_on6.255.91167245
37E1.R105 5ht5a_on3.2751.86246
383x28 5ht5a_on14.045.625265
39I2x53 5ht5a_on8.946678.80917348
40E2.E191 5ht5a_on5.426673.87667343
415x47 5ht5a_on11.68336.63467358
426x29 5ht5a_on7.432.03833145
436x49 5ht5a_on1.873.72167146
447x53 5ht5a_on7.066674.93889369
457x56 5ht5a_on7.523331.82083346
468x50 5ht5a_on06.65556060
   
Orange: nodes, hubs and links specific of 5ht5a_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht5a_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht5a_off Recurrence 5ht5a_on Recurrence 5ht5a_off Hub1? 5ht5a_on Hub1? 5ht5a_off Hub2? 5ht5a_on Hub2? ConSurf1 ConSurf2
12x57 7x39 5ht5a_off13.7030YesYesYesYes76
21x46 2x57 5ht5a_off24.90820NoNoYesYes77
31x46 7x47 5ht5a_off24.22777.1887NoNoYesYes76
47x38 7x39 5ht5a_off17.72420YesNoYesYes56
56x51 7x38 5ht5a_off17.87110YesNoYesNo75
66x48 6x51 5ht5a_off46.1470YesYesYesNo87
72x45 4x50 5ht5a_off19.26692.4193NoNoNoNo99
82x48 4x50 5ht5a_off16.60670NoNoNoNo69
96x40 7x49 5ht5a_off30.02360NoNoYesNo89
106x40 7x52 5ht5a_off28.79790.0125842NoNoNoNo88
116x39 7x52 5ht5a_off26.39680.956396NoNoNoNo78
126x35 6x39 5ht5a_off25.20590YesNoNoNo67
136x35 7x56 5ht5a_off13.03020YesNoNoYes66
142x46 3x46 5ht5a_off64.91130YesNoNoNo99
152x42 3x46 5ht5a_off64.15730YesYesNoNo89
162x41 4x46 5ht5a_off17.42643.04851NoYesNoNo48
172x41 4x43 5ht5a_off12.48121.16403NoYesNoNo43
182x48 2x52 5ht5a_off11.19360NoNoNoNo66
192x64 3x28 5ht5a_off31.11010YesNoNoYes55
202x59 3x28 5ht5a_off29.19611.06022NoNoNoYes55
212x59 E1x50 5ht5a_off26.97290NoNoYesYes58
225x39 Lig 5ht5a_off39.74020YesYesYesYes70
234x60 E2.T184 5ht5a_off14.21340YesNoNoNo74
243x26 E2.T184 5ht5a_off11.80840NoNoNoNo64
253x40 6x48 5ht5a_off24.31666.00579NoNoYesYes88
263x40 5x50 5ht5a_off23.38094.81659NoNoNoNo89
273x44 5x50 5ht5a_off13.18490NoNoNoNo69
282x42 4x45 5ht5a_off22.54190YesYesNoNo85
293x48 4x45 5ht5a_off20.33792.36582NoNoNoNo65
303x48 3x52 5ht5a_off18.44727.08488NoNoYesNo64
313x53 4x38 5ht5a_off17.30273.31907NoNoYesYes88
323x50 3x53 5ht5a_off15.2380YesNoNoNo98
333x51 3x55 5ht5a_off19.51445.99006YesYesNoNo86
344x39 4x43 5ht5a_off10.00270NoNoNoNo33
355x36 5x39 5ht5a_off14.51880YesNoYesYes67
367x47 7x48 5ht5a_off26.92653.62109YesYesNoNo66
377x43 7x48 5ht5a_off25.56931.21123NoNoNoNo46
387x40 7x43 5ht5a_off24.20450NoNoNoNo84
396x50 7x40 5ht5a_off22.83180NoNoNoNo98
406x50 7x37 5ht5a_off20.06345.86422NoNoNoNo95
416x54 7x37 5ht5a_off18.66375.01793NoNoNoNo55
426x54 6x57 5ht5a_off17.26020NoNoNoNo55
436x57 E3.S312 5ht5a_off14.42990NoNoNoNo51
44E3.I315 E3.S312 5ht5a_off13.00310NoNoNoNo41
453x44 5x54 5ht5a_off11.9361.20808NoNoNoNo68
465x54 6x41 5ht5a_off10.47060NoNoYesNo88
476x51 Lig 5ht5a_off28.57360.229661YesNoYesYes70
482x64 Lig 5ht5a_off31.72870YesNoYesYes50
491x49 7x47 Shared15.334615.2929YesNoYesYes86
501x49 7x50 Shared14.642537.5102YesNoNoNo89
511x50 7x50 Shared15.106538.5044NoNoNoNo99
521x50 2x50 Shared16.444343.3807NoNoYesYes99
536x48 7x45 Shared100100YesYesNoNo89
547x45 7x49 Shared99.489699.1631NoNoYesNo99
552x46 7x49 Shared93.956673.7683YesNoYesNo99
562x46 3x42 Shared29.068666.7118YesNoYesNo97
572x45 3x42 Shared26.041165.1325NoNoYesNo97
586x36 7x56 Shared10.462817.4133NoNoNoYes86
592x45 4x46 Shared13.455562.7163NoNoNoNo98
602x42 4x46 Shared14.847558.8404YesYesNoNo88
617x38 Lig Shared12.028819.1845YesNoYesYes50
624x60 5x39 Shared23.740513.1221YesNoYesYes77
633x33 Lig Shared16.912211.3666NoNoYesYes70
643x33 4x57 Shared14.518810.2058NoNoYesYes78
653x36 Lig Shared28.828844.1263NoNoYesYes60
662x42 3x49 Shared28.41957.4372YesYesYesNo89
673x49 I2x53 Shared18.880320.5059YesNoNoYes98
683x52 I2x53 Shared19.870120.8173YesNoNoYes48
693x51 3x52 Shared26.50513.0403YesYesYesNo84
706x52 Lig Shared30.158952.1771YesYesYesYes60
712x50 7x49 Shared22.874447.1686YesYesYesNo99
722x57 7x42 Shared19.955117.0421YesYesYesYes77
737x38 7x42 Shared11.742618.269YesNoYesYes57
743x36 6x48 Shared28.774744.3466NoNoYesYes68
756x48 6x52 Shared32.985351.7366YesYesYesYes86
767x39 7x42 5ht5a_on0.30545617.7971YesYesYesYes67
773x32 7x42 5ht5a_on5.4788718.3508NoNoYesYes87
783x32 Lig 5ht5a_on9.1984722.9881NoNoYesYes80
791x49 7x51 5ht5a_on1.4190222.9315YesNoNoNo86
803x49 4x38 5ht5a_on8.7228936.321YesNoYesYes98
812x39 4x38 5ht5a_on8.6068927.0339NoNoYesYes88
822x39 2x40 5ht5a_on026.5526NoNoNoNo89
832x40 8x50 5ht5a_on024.407NoNoNoYes90
848x50 I1x50 5ht5a_on017.9607NoYesNoYes00
852x46 7x53 5ht5a_on010.3977YesNoNoYes99
863x28 Lig 5ht5a_on025.7535NoYesYesYes50
872x63 3x28 5ht5a_on012.0588NoYesNoYes55
885x43 Lig 5ht5a_on2.1381925.5962NoNoYesYes60
895x39 5x43 5ht5a_on0.061864423.3971YesYesNoNo76
904x60 4x61 5ht5a_on2.4359110.6242YesNoNoNo76
916x55 Lig 5ht5a_on0.76170612.3105NoNoYesYes70
926x55 E2.R196 5ht5a_on013.2668NoNoNoNo74
936x59 E2.R196 5ht5a_on010.7186NoNoNoNo54
947x51 7x56 5ht5a_on021.8429NoNoNoYes66
956x32 6x36 5ht5a_on016.545NoNoNoNo88
966x29 6x32 5ht5a_on1.3532815.4187NoYesNoNo58
976x27 6x29 5ht5a_on012.2444NoNoNoYes45
986x27 6x30 5ht5a_on1.3532810.1837NoNoNoNo47

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared10.226.813331121
2x567x42Shared5.054.211122
2x59E1x505ht5a_off5.6900022
2x593x28Shared19.367.213330021
2x602x645ht5a_off10.0601021
2x607x395ht5a_off7.4101022
2x607x425ht5a_off5.0901022
2x63E1x50Shared6.358.463330122
2x643x285ht5a_off8.7200011
2x64E2x515ht5a_off6.3700012
2x64Lig5ht5a_off8.900010
3x29E2x52Shared4.613.073330021
3x327x42Shared8.059.196671112
3x32LigShared14.5915.90671110
3x334x57Shared6.464.846670012
3x33LigShared48.470010
3x366x48Shared5.223.480012
3x36LigShared4.276.306670010
3x374x53Shared6.45.863331012
3x375x461Shared5.033.361011
3x37LigShared3.964.353331010
4x605x39Shared12.5211.12670021
5x36E2.W1815ht5a_off6.5401022
E2x52Lig5ht5a_off11.0100010
5x395x43Shared5.0910.59671011
5x39Lig5ht5a_off5.5101010
5x43LigShared15.136.193331010
5x445x48Shared4.994.576671012
5x446x52Shared5.195.623331011
5x44Lig5ht5a_off3.9601010
5x461Lig5ht5a_off4.2401010
5x475x485ht5a_off8.2500122
5x476x52Shared22.5116.080121
6x486x515ht5a_off7.0201121
6x486x52Shared8.025.343331121
6x516x52Shared9.656.076671111
6x516x555ht5a_off13.9901111
6x517x345ht5a_off4.9601112
6x517x385ht5a_off6.0901111
6x51LigShared910.07331110
6x52LigShared7.375.893331110
6x557x345ht5a_off5.401012
6x55LigShared12.474.866671010
7x387x395ht5a_off4.5601012
7x387x42Shared15.244.686671012
7x38LigShared10.235.423331010
7x397x42Shared8.685.143331022
5x40Lig5ht5a_off2.1200010
5x445x455ht5a_off1.5901012
5x36E2.S195Shared1.446.711022
5x365x395ht5a_off1.1201021
2x603x285ht5a_on03.296671021
2x633x285ht5a_on05.643330121
2x647x395ht5a_on05.813330012
3x28E1x505ht5a_on09.060112
E2.R196E2x515ht5a_on03.503330022
5x39E2.S1955ht5a_on07.206671012
6x55E2.R1965ht5a_on06.21012
5x406x595ht5a_on03.740012
5x446x555ht5a_on04.233331011
5x455x485ht5a_on03.786670022
5x476x485ht5a_on05.343330122
3x28Lig5ht5a_on05.796670110
3x283x295ht5a_on02.740112
6x59E2.R1965ht5a_on02.40022
4x565x435ht5a_on02.066670021
5x39E2.W1815ht5a_on01.931012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht5a_off 7UM4-5-HT5A-AS2674723
5ht5a_on 7UM5-5-HT5A-5-CT-chim(NtGi1-Go)/&β;1/&γ;2
7UM6-5-HT5A-Lisuride-chim(NtGi1-Go)/&β;1/&γ;2
7UM7-5-HT5A-Methylergometrine-chim(NtGi1-Go)/&β;1/&γ;2
Network Difference
Value 5ht5a_off 5ht5a_on
Imin 3.95 3.03333
Number of Linked Nodes 233 259
Number of Specific Nodes 9 (3.86%) 35  (13.51%)
Number of Shared Nodes 224 (96.14%) 224  (86.49%)
Number of Links 264 274
Number of Specific Links 131 (49.62%) 141  (51.46%)
Number of Shared Links 133 (50.38%) 133  (48.54%)
Number of Hubs 32 28
Number of Specific Hubs 18 (56.25%) 14  (50.00%)
Number of Shared Hubs 14 (43.75%) 14  (50.00%)
Average % Shared Neighbours (Jaccard) 33.08
Average % Shared Neighbours (Otsuka) 41.46
Average % Shared Neighbours (Overlap Coefficient) 50.67
Average % Shared Cliques (k3-6) 78.33
Graphlets Similarity 0.498817
Paths Difference
Value 5ht5a_off 5ht5a_on
Number Of Nodes in MetaPath 70 49
Specific Nodes in MetaPath 38 (54.29%) 17  (34.69%)
Shared Nodes in MetaPath 224 (96.14%) 224  (96.14%)
Number Of Links MetaPath 75 50
Specific Links in MetaPath 48 (64.00%) 23  (46.00%)
Shared Links in MetaPath 133 (50.38%) 133  (50.38%)
Number of Shortest Paths 51761 50534
Length Of Smallest Path 3 3
Average Path Length 13.3143 14.4532
Length of Longest Path 30 32
Minimum Path Strength 1.22 0.658333
Average Path Strength 6.76937 5.50695
Maximum Path Strength 16.08 12.6267
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.910741 0.92078
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4 3.7037
Average % Of Corr. Nodes 42.6198 43.1077
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 45.2648 34.4911
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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