Orange: nodes, hubs and links specific of 5ht_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht_off Avg Int. Strength 5ht_on Avg Int. Strength 5ht_off Num Of Links 5ht_on Num Of Links ConSurf
12x56 5ht_off5025438
2E1x52 5ht_off00435
33x28 5ht_off5011.1111535
43x50 5ht_off00429
53x56 5ht_off00436
65x36 5ht_off00425
75x64 5ht_off500416
86x31 5ht_off00425
96x41 5ht_off33.33330628
106x51 5ht_off10031.9444627
117x37 5ht_off500535
128x57 5ht_off33.33330424
13CT 5ht_off00513
14NT 5ht_off83.33330710
15I1x50 Shared33.333340.2778448
162x42 Shared16.666722.2222458
172x50 Shared83.333375.9259559
182x57 Shared10040.2778548
19E1x50 Shared10083.3333667
203x32 Shared5033.3333448
213x42 Shared83.333355.5556548
223x49 Shared500449
233x51 Shared5034.2593448
24I2x53 Shared5044.4444457
25E2 Shared10099.074111133
265x48 Shared501.38889545
275x58 Shared066.6667469
286x44 Shared10029.1667449
296x48 Shared10083.3333568
306x52 Shared96.666769.4444647
317x39 Shared10051.3889656
327x42 Shared100100757
338x50 Shared5083.3333478
34Lig Shared1001001390
351x50 5ht_on025349
361x60 5ht_on025356
372x46 5ht_on029.6296249
382x65 5ht_on00245
393x24 5ht_on016.6667245
403x52 5ht_on5027.7778245
414x50 5ht_on83.333316.6667349
425x47 5ht_on5077.7778358
43E3 5ht_on027.7778153
447x49 5ht_on039.3519359
457x53 5ht_on098.1482269
46I3 5ht_on00040
   
Orange: nodes, hubs and links specific of 5ht_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht_off Recurrence 5ht_on Recurrence 5ht_off Hub1? 5ht_on Hub1? 5ht_off Hub2? 5ht_on Hub2? ConSurf1 ConSurf2
11x46 2x57 5ht_off21.63720NoNoYesYes78
21x46 2x54 5ht_off12.12070NoNoNoNo76
32x56 7x42 5ht_off52.42261.21107YesNoYesYes87
42x53 2x56 5ht_off38.31160NoNoYesNo78
52x53 7x46 5ht_off36.89436.82688NoNoNoNo79
62x50 7x46 5ht_off36.23947.94308YesYesNoNo99
72x46 2x50 5ht_off57.13481.08775NoYesYesYes99
83x42 4x46 5ht_off94.64310YesYesNoNo88
92x42 4x46 5ht_off93.59432.71304YesYesNoNo88
102x42 3x45 5ht_off89.39882.30514YesYesNoNo87
113x45 4x45 5ht_off87.92531.15415NoNoNoNo76
123x49 4x45 5ht_off82.16420YesYesNoNo96
133x49 3x50 5ht_off59.40140YesYesYesNo99
142x39 3x50 5ht_off54.79150NoNoYesNo89
152x37 2x39 5ht_off53.20030NoNoNoNo78
162x37 2x40 5ht_off51.54771.18893NoNoNoNo79
172x40 I1x50 5ht_off44.8350.0790514NoNoYesYes98
181x56 8x50 5ht_off28.29880NoNoYesYes78
191x52 1x56 5ht_off24.68150NoNoNoNo67
207x42 Lig 5ht_off1000YesYesYesYes70
213x37 Lig 5ht_off51.66540NoNoYesYes70
223x37 4x53 5ht_off48.9231.53043NoNoNoNo78
233x38 4x53 5ht_off47.7820NoNoNoNo88
243x38 4x50 5ht_off46.72811.46719NoNoNoYes89
253x42 4x50 5ht_off45.23414.04743YesYesNoYes89
261x52 8x57 5ht_off19.49350NoNoYesNo64
273x49 I2x57 5ht_off16.58741.95731YesYesNoNo96
282x38 I2x57 5ht_off15.32871.13518NoNoNoNo56
292x38 4x39 5ht_off13.49710NoNoNoNo54
306x48 Lig 5ht_off28.21690YesYesYesYes80
316x44 7x45 5ht_off45.76110YesYesNoNo99
323x40 Lig 5ht_off66.68710NoNoYesYes80
333x40 6x44 5ht_off38.63390.0474308NoNoYesYes89
343x33 4x57 5ht_off22.21039.10356NoNoNoNo67
353x34 4x57 5ht_off16.42883.05771NoNoNoNo67
362x60 3x28 5ht_off36.95570NoNoYesNo75
373x28 E1x50 5ht_off93.73758.98972YesNoYesYes57
38E1x50 E1x52 5ht_off21.17681.86245YesYesYesNo75
393x25 E1x50 5ht_off57.65160.942293NoNoYesYes97
403x24 E1x52 5ht_off10.63190.0221344NoYesYesNo55
413x25 E2 5ht_off54.31060NoNoYesYes93
423x40 5x50 5ht_off52.4840NoNoNoNo89
433x41 5x50 5ht_off48.99462.93755NoNoNoNo69
443x41 3x44 5ht_off37.24740NoNoNoNo66
453x43 6x44 5ht_off62.14890NoNoYesYes89
463x44 5x53 5ht_off43.44331.27115NoNoNoNo66
473x43 6x41 5ht_off59.93350NoNoYesNo88
485x54 6x41 5ht_off13.95240NoNoYesNo88
493x44 5x54 5ht_off12.45332.53913NoNoNoNo68
505x53 5x57 5ht_off41.03860NoNoNoNo65
513x51 3x55 5ht_off24.77872.15336YesYesNoNo86
523x55 5x64 5ht_off12.23330.964427NoNoYesNo66
533x55 3x56 5ht_off10.24810NoNoYesNo66
543x41 4x52 5ht_off12.67334.39842NoNoNoNo65
555x36 E2 5ht_off27.06063.05771YesNoYesYes53
565x36 5x39 5ht_off20.14840YesNoNoNo57
575x58 6x41 5ht_off37.13483.55099YesYesYesNo98
585x58 5x62 5ht_off27.57740YesYesNoNo95
595x62 6x31 5ht_off24.98850NoNoYesNo55
606x31 6x32 5ht_off12.62220YesNoNoNo58
616x40 7x49 5ht_off12.7040NoNoNoYes89
627x38 7x42 5ht_off13.68120.850593NoNoYesYes67
636x51 7x38 5ht_off13.39471.52727YesNoNoNo76
646x51 Lig 5ht_off30.332.82372YesNoYesYes70
656x51 7x34 5ht_off44.37960YesNoNoNo73
666x54 7x34 5ht_off27.7827.60158NoNoNoNo53
676x54 7x37 5ht_off16.78696.09328NoNoYesNo55
686x58 7x34 5ht_off15.01660.0158103NoNoNoNo43
696x61 7x30 5ht_off13.7580NoNoNoNo34
708x57 CT 5ht_off14.22870YesNoYesNo43
711x42 2x57 5ht_off16.37760NoNoYesYes78
721x42 7x43 5ht_off12.12070NoNoNoNo74
732x64 7x39 5ht_off38.73632.60237NoNoYesYes56
742x64 E1 5ht_off37.08880NoNoNoNo53
757x35 E1 5ht_off35.49250NoNoNoNo43
767x35 NT 5ht_off31.90070NoNoYesNo40
771x32 NT 5ht_off16.21390NoNoYesNo60
781x32 1x35 5ht_off10.05883.08617NoNoNoNo63
792x57 7x42 5ht_off38.56743.42451YesYesYesYes87
802x60 7x42 5ht_off31.39930NoNoYesYes77
813x32 Lig 5ht_off26.89699.30277YesYesYesYes80
827x39 7x42 Shared41.340519.2664YesYesYesYes67
831x50 2x50 Shared14.279915.5794NoYesYesYes99
842x46 3x42 Shared56.142216.7336NoYesYesYes98
858x50 I1x50 Shared35.011513.9036YesYesYesYes88
862x50 7x49 Shared39.217223.8514YesYesNoYes99
876x44 6x48 Shared35.257110.7984YesYesYesYes98
887x45 7x49 Shared42.404799.8862NoNoNoYes99
893x33 Lig Shared24.241510.5992NoNoYesYes60
903x51 5x57 Shared36.193411.2538YesYesNoNo85
916x52 Lig Shared14.909235.5162YesYesYesYes70
926x40 7x52 Shared10.611423.8261NoNoNoNo88
932x56 3x28 Shared66.866210.536YesNoYesNo85
942x56 3x32 Shared26.579710.1628YesNoYesYes88
955x43 Lig 5ht_on2.1386542.2957NoNoYesYes60
961x39 7x39 5ht_on1.6935315.8735NoNoYesYes66
973x32 7x42 5ht_on0.48094122.6656YesYesYesYes87
986x48 7x45 5ht_on0100YesYesNoNo89
993x36 6x48 5ht_on053.3723NoNoYesYes78
1003x32 3x36 5ht_on0.47582524.1866YesYesNoNo87
1012x43 8x50 5ht_on035.1368NoNoYesYes88
1022x43 7x53 5ht_on1.9135336.1455NoNoNoYes89
1037x49 7x53 5ht_on090.419NoYesNoYes99
1041x60 I1x50 5ht_on5.4694311.8988NoYesYesYes68
1052x41 4x42 5ht_on011.8609NoNoNoNo47
1062x42 4x42 5ht_on1.9391112.9486YesYesNoNo87
1072x42 3x46 5ht_on1.9442332.5281YesYesNoNo89
1083x46 7x53 5ht_on033.1099NoNoNoYes99
1092x42 3x49 5ht_on018.0269YesYesYesYes89
1102x46 7x49 5ht_on012.8221NoYesNoYes99
1115x39 5x43 5ht_on040.9581NoNoNoNo76
1125x39 E2 5ht_on034.1755NoNoYesYes73
1133x42 4x49 5ht_on1.9544610.1787YesYesNoNo86
1146x40 7x53 5ht_on057.6917NoNoNoYes89
1155x58 6x40 5ht_on037.6474YesYesNoNo98
1163x47 5x58 5ht_on013.5115NoNoYesYes99
1173x47 5x57 5ht_on2.5735512.3858NoNoNoNo95
1183x49 I2x53 5ht_on9.828613.9415YesYesYesYes97
1195x47 6x52 5ht_on8.641611.2221NoYesYesYes87
1205x58 6x37 5ht_on018.9312YesYesNoNo98
1215x62 6x37 5ht_on017.8372NoNoNoNo58
122E2 E3 5ht_on019.0735YesYesNoYes33
1236x39 7x52 5ht_on019.6047NoNoNoNo68
1241x39 2x65 5ht_on012.7336NoNoNoYes65
1256x35 6x39 5ht_on2.1386510.4253NoNoNoNo76
1263x36 Lig 5ht_on1.3814328.8791NoNoYesYes70
1276x48 6x52 5ht_on2.8191439.9368YesYesYesYes87

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared10.03077.205691121
2x567x42Shared4.545333.922781121
2x577x39Shared6.011333.304721122
2x577x42Shared4.267336.769581121
2x607x39Shared7.683.036621022
2x607x425ht_off4.5033301021
3x323x36Shared3.463673.203611111
3x327x42Shared9.501339.561621111
3x32LigShared13.773712.45161110
3x334x57Shared3.407674.353380012
3x33LigShared6.2073311.97190010
3x36LigShared8.0717.72371110
3x374x53Shared4.693335.490740012
3x375x461Shared4.882333.713660011
3x37Lig5ht_off4.37900010
3x405x505ht_off4.7426700112
3x406x44Shared8.334.104680112
5x445x48Shared4.2643.57621012
5x446x52Shared3.7154.189721011
5x44Lig5ht_off3.3206701010
5x475x48Shared8.819676.111531022
5x476x52Shared30.18421.20091021
6x446x48Shared4.376674.20870121
6x447x455ht_off8.1086700122
6x486x515ht_off7.8513301111
6x486x52Shared5.911336.097271111
6x487x41Shared12.4357.697681112
6x48Lig5ht_off13.83801110
6x516x525ht_off9.2183301011
6x517x345ht_off4.00501012
6x517x38Shared6.204335.077781011
6x51LigShared13.797311.05671010
6x52LigShared12.86637.752821010
7x387x42Shared5.475338.486531011
7x38Lig5ht_off5.07201010
7x397x42Shared8.3917.252921121
7x42Lig5ht_off4.41801110
3x40Lig5ht_off3.8053300110
5x486x525ht_off3.8083301021
6x516x555ht_off3.26201011
E2x52LigShared3.073333.537820010
5x406x55Shared2.4362.044170021
5x43LigShared2.1294.924860010
3x29E2x525ht_on04.705140021
3x366x485ht_on04.984491111
3x374x565ht_on03.610012
3x406x485ht_on05.567820111
5x395x435ht_on06.80620321
5x476x445ht_on04.671341022
6x487x455ht_on09.80381112
6x55Lig5ht_on07.184210010
5x461Lig5ht_on02.849540010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht_off 5ht2_off
5ht1_off
5ht_on 5ht1_on
5ht2_on
5ht4_on
5ht5_on
5ht6_on
5ht7_on
Network Difference
Value 5ht_off 5ht_on
Imin 3.30567 3.18347
Number of Linked Nodes 275 297
Number of Specific Nodes 5 (1.82%) 27  (9.09%)
Number of Shared Nodes 270 (98.18%) 270  (90.91%)
Number of Links 303 315
Number of Specific Links 135 (44.55%) 147  (46.67%)
Number of Shared Links 168 (55.45%) 168  (53.33%)
Number of Hubs 34 32
Number of Specific Hubs 14 (41.18%) 12  (37.50%)
Number of Shared Hubs 20 (58.82%) 20  (62.50%)
Average % Shared Neighbours (Jaccard) 40.50
Average % Shared Neighbours (Otsuka) 49.56
Average % Shared Neighbours (Overlap Coefficient) 58.73
Average % Shared Cliques (k3-6) 54.17
Graphlets Similarity 0.54205
Paths Difference
Value 5ht_off 5ht_on
Number Of Nodes in MetaPath 89 46
Specific Nodes in MetaPath 61 (68.54%) 18  (39.13%)
Shared Nodes in MetaPath 270 (98.18%) 270  (98.18%)
Number Of Links MetaPath 94 46
Specific Links in MetaPath 81 (86.17%) 33  (71.74%)
Shared Links in MetaPath 168 (55.45%) 168  (55.45%)
Number of Shortest Paths 62345 54860
Length Of Smallest Path 3 3
Average Path Length 14.1387 12.4967
Length of Longest Path 36 26
Minimum Path Strength 0.3725 0.246173
Average Path Strength 5.30871 4.87082
Maximum Path Strength 21.5252 14.4769
Minimum Path Correlation 0.701667 0.701111
Average Path Correlation 0.915627 0.907999
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.22581 4.54545
Average % Of Corr. Nodes 43.9021 42.6261
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 41.6957 43.4116
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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