Orange: nodes, hubs and links specific of a1_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of a1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner a1_on_allo Avg Int. Strength a1_on Avg Int. Strength a1_on_allo Num Of Links a1_on Num Of Links ConSurf
11x50 a1_on_allo5.7387.03539
21x53 a1_on_allo3.564.93439
32x56 a1_on_allo4.965.01436
42x64 a1_on_allo8.65757.29333433
53x46 a1_on_allo4.56756.15429
63x50 a1_on_allo5.026.20333439
73x51 a1_on_allo6.20257.03437
83x53 a1_on_allo10.987516.095428
93x56 a1_on_allo4.5254.07667436
104x50 a1_on_allo6.667512.36419
11E2.I175 a1_on_allo4.1766.48333533
125x40 a1_on_allo5.2645.37667535
135x41 a1_on_allo4.74.875424
145x411 a1_on_allo5.7985.23333534
155x62 a1_on_allo3.6353.93667436
166x40 a1_on_allo4.5785.44528
178x53 a1_on_allo3.82754.39416
18Alloh17 a1_on_allo8.02250800
191x35 Shared10.09258.598455
201x39 Shared10.6058.98456
212x42 Shared4.3383.574558
222x46 Shared6.466.615549
232x50 Shared7.4846.92559
242x57 Shared5.0255.7725446
253x22 Shared5.818334.39663
263x33 Shared4.1464.415544
273x37 Shared4.821675.6675646
283x40 Shared7.587.438458
29I2x53 Shared11.7459.948457
304x60 Shared5.0456.095444
31E2.W146 Shared4.50255.2125446
32E2.N147 Shared4.0354.8025446
33E2x52 Shared10.17758.302454
34E2.V174 Shared5.234.54443
355x39 Shared6.806676.46167666
365x42 Shared6.11755.85445
375x44 Shared8.898.035445
385x461 Shared8.7189.116558
395x58 Shared4.691435.71833769
406x48 Shared7.764297.59571778
41E3.K265 Shared4.0254.4775443
427x39 Shared7.1555.97455
437x42 Shared7.4926.37333567
447x53 Shared6.975.022459
458x50 Shared6.018335.8125649
46Lig Shared8.35259.272221290
471x32 a1_on9.093336.52344
482x40 a1_on7.947.704358
493x34 a1_on6.455.95245
506x51 a1_on8.986.435346
516x59 a1_on6.4954.2825244
527x35 a1_on6.796676.1975343
537x38 a1_on5.375.825245
547x49 a1_on9.973339.88349
   
Orange: nodes, hubs and links specific of a1_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of a1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner a1_on_allo Recurrence a1_on Recurrence a1_on_allo Hub1? a1_on Hub1? a1_on_allo Hub2? a1_on Hub2? ConSurf1 ConSurf2
11x35 1x39 a1_on_allo10.29357.29517YesYesYesYes56
21x35 2x64 a1_on_allo15.07249.04602YesYesYesNo53
31x46 7x46 a1_on_allo38.13484.06846NoNoNoNo89
41x46 1x50 a1_on_allo37.15110NoNoYesNo89
51x50 2x47 a1_on_allo69.18740YesNoNoNo99
61x54 2x44 a1_on_allo13.01298.99551NoNoNoNo75
78x50 I1x50 a1_on_allo50.54390YesYesNoNo98
81x60 I1x50 a1_on_allo45.6336.1055NoNoNoNo68
91x60 8x53 a1_on_allo35.54752.04265NoNoYesNo66
101x59 8x53 a1_on_allo10.19360NoNoYesNo56
111x57 2x44 a1_on_allo10.42556.76206NoNoNoNo85
125x40 Lig a1_on_allo14.52050YesNoYesYes50
135x40 5x43 a1_on_allo13.18483.38945YesNoNoNo55
143x37 5x43 a1_on_allo13.17680YesYesNoNo65
153x38 4x53 a1_on_allo36.49925.17957NoNoNoNo78
163x38 4x50 a1_on_allo35.43951.73401NoNoYesNo79
172x45 4x50 a1_on_allo28.91310NoNoYesNo99
182x45 4x46 a1_on_allo27.79731.93042NoNoNoNo98
192x42 4x46 a1_on_allo26.67363.85522YesYesNoNo88
203x49 I2x53 a1_on_allo14.94442.13244NoNoYesYes97
218x47 8x50 a1_on_allo10.16960NoNoYesYes89
222x46 7x49 a1_on_allo44.53331.66667YesYesNoYes99
237x41 Lig a1_on_allo41.03420NoNoYesYes70
242x46 3x46 a1_on_allo53.61110YesYesYesNo99
253x32 Lig a1_on_allo34.21581.90236NoNoYesYes60
263x33 4x60 a1_on_allo17.81973.00786YesYesYesYes44
273x30 4x60 a1_on_allo17.26390NoNoYesYes64
282x63 E2x52 a1_on_allo24.8741.96409NoNoYesYes34
292x63 3x28 a1_on_allo21.97470NoNoNoNo36
302x62 3x28 a1_on_allo19.07541.7789NoNoNoNo46
312x62 E1x50 a1_on_allo16.24810NoNoNoNo43
323x25 E2.V174 a1_on_allo11.52525.47699NoNoYesYes93
333x22 E2.L149 a1_on_allo24.29423.68687YesYesNoNo34
34E2.E153 E2.L149 a1_on_allo21.89871.99214NoNoNoNo24
35E2.E153 E2.P165 a1_on_allo19.18740NoNoNoNo25
36E2.P165 E2.W156 a1_on_allo11.01745.83614NoNoNoNo51
377x48 Alloh17 a1_on_allo13.54080NoNoYesNo60
386x43 7x48 a1_on_allo11.41339.9046NoNoNoNo66
396x43 7x52 a1_on_allo10.11760NoNoNoNo68
406x40 7x52 a1_on_allo11.11330YesNoNoNo88
413x46 3x50 a1_on_allo45.9010.224467YesNoYesNo99
425x57 5x58 a1_on_allo12.23710NoNoYesYes69
433x51 5x60 a1_on_allo13.82872.49719YesNoNoNo74
445x39 E2.W146 a1_on_allo10.52558.43995YesYesYesYes66
456x48 6x52 a1_on_allo13.56879.05724YesYesNoNo87
465x44 6x52 a1_on_allo10.55755.98765YesYesNoNo57
475x62 6x33 a1_on_allo11.30930YesNoNoNo67
486x47 Alloh17 a1_on_allo20.6550NoNoYesNo80
496x47 6x48 a1_on_allo16.57.41302NoNoYesYes88
507x34 Lig a1_on_allo29.38890NoNoYesYes40
517x34 E3.K265 a1_on_allo26.94951.85746NoNoYesYes43
526x57 E3.K265 a1_on_allo13.57270NoNoYesYes43
538x50 8x54 a1_on_allo20.32710YesYesNoNo97
547x55 8x54 a1_on_allo15.25630NoNoNoNo67
557x55 8x51 a1_on_allo10.17762.31201NoNoNoNo68
568x52 8x53 a1_on_allo15.28030NoNoYesNo46
578x52 8x56 a1_on_allo10.19360NoNoNoNo45
582x56 3x32 a1_on_allo34.09580YesNoNoNo66
591x39 7x39 Shared10.129625.0337YesYesYesYes65
601x39 7x42 Shared13.768737.1324YesYesYesYes67
612x56 7x42 Shared46.644857.4467YesNoYesYes67
622x53 2x56 Shared77.633457.615NoNoYesNo86
632x53 7x46 Shared77.045558.0976NoNoNoNo89
642x50 7x46 Shared41.52659.4444YesYesNoNo99
651x50 2x50 Shared10094.1526YesNoYesYes99
661x50 7x50 Shared56.782468.1987YesNoNoNo99
671x53 2x47 Shared49.92815.6285YesNoNoNo99
681x53 7x50 Shared49.560166.4198YesNoNoNo99
691x53 8x50 Shared89.330651.9641YesNoYesYes99
701x54 2x47 Shared18.163613.4287NoNoNoNo79
717x38 Lig Shared11.941113.9001NoYesYesYes50
723x37 4x53 Shared37.55113.5971YesYesNoNo68
732x42 3x49 Shared19.747312.8339YesYesNoNo89
742x46 2x50 Shared17.971720.0281YesYesYesYes99
753x36 Lig Shared41.042168.5802NoNoYesYes60
763x36 6x48 Shared41.386168.8664NoNoYesYes68
776x48 7x45 Shared93.353694.5062YesYesNoNo89
787x45 7x49 Shared98.0285100NoNoNoYes99
796x48 7x41 Shared42.929718.2772YesYesNoNo87
803x33 Lig Shared31.168519.1863YesYesYesYes40
81E2x52 Lig Shared81.428553.0696YesYesYesYes40
82E2.I175 E2x52 Shared58.741949.1919YesNoYesYes34
83E2.I175 E2.V174 Shared60.861454.5174YesNoYesYes33
843x22 E2.V174 Shared39.938446.7228YesYesYesYes33
853x33 5x39 Shared14.128615.4265YesYesYesYes46
863x40 6x48 Shared33.947930.1852YesYesYesYes88
875x42 5x461 Shared11.649210.5556YesYesYesYes58
883x37 5x461 Shared12.716913.5129YesYesYesYes68
895x58 5x61 Shared28.277260.0337YesYesNoNo99
905x61 5x65 Shared18.007756.9416NoNoNoNo98
915x65 6x33 Shared15.300338.4736NoNoNoNo87
922x50 7x49 Shared52.955359.1246YesYesNoYes99
937x42 Lig Shared40.198443.5129YesYesYesYes70
943x37 3x40 Shared30.400724.7475YesYesYesYes68
953x50 5x58 Shared41.094143.0303YesNoYesYes99
961x35 7x35 a1_on3.0112811.5769YesYesNoYes53
971x35 1x36 a1_on010.303YesYesNoNo55
981x35 7x38 a1_on9.4617327.7273YesYesNoYes55
991x50 2x51 a1_on8.0340731.1841YesNoNoNo97
1001x47 2x51 a1_on5.3627129.0123NoNoNoNo67
1011x47 1x48 a1_on2.6833626.8294NoNoNoNo64
1021x48 1x49 a1_on024.6352NoNoNoNo48
1031x49 1x52 a1_on2.6353722.4299NoNoNoNo87
1041x52 8x54 a1_on013.4961NoNoNoNo77
1052x40 8x50 a1_on4.5109247.5309NoYesYesYes89
1062x40 I1x50 a1_on0.11597210.1235NoYesNoNo88
1072x37 2x40 a1_on035.202NoNoNoYes78
1082x37 2x39 a1_on015.6229NoNoNoNo78
1092x37 I2x54 a1_on1.2716918.165NoNoNoNo74
1102x39 3x49 a1_on3.751112.7497NoNoNoNo89
1116x51 7x38 a1_on012.0595NoYesNoYes65
1126x51 7x41 a1_on1.5476318.1818NoYesNoNo67
1133x43 7x49 a1_on076.532NoNoNoYes89
1143x22 3x26 a1_on0.047988513.3895YesYesNoNo35
1153x23 3x26 a1_on011.6442NoNoNoNo15
1163x22 E2.V152 a1_on2.5473922.5533YesYesNoNo31
117E2.P165 E2.V152 a1_on020.9147NoNoNoNo51
118E2.E164 E2.P165 a1_on5.5226713.468NoNoNoNo35
1193x21 E2.E164 a1_on2.7633411.5769NoNoNoNo63
1203x43 7x53 a1_on5.6426594.422NoNoYesYes89
1213x50 7x53 a1_on0.25993844.2031YesNoYesYes99
1223x47 5x58 a1_on1.4596511.257NoNoYesYes99
1236x40 7x53 a1_on8.6179344.3603YesNoYesYes89
1245x58 6x40 a1_on6.1625242.8171YesYesYesNo98
125I2x53 I2x54 a1_on2.5433916.9529YesYesNoNo74
1263x52 I2x53 a1_on015.0898NoNoYesYes57
1273x54 5x65 a1_on020.1347NoNoNoNo98
1283x54 5x64 a1_on2.7753317.3232NoNoNoNo95
1293x55 5x64 a1_on011.431NoNoNoNo75
1305x38 E2.W146 a1_on4.5189211.257NoNoYesYes36
1316x55 Lig a1_on4.9468115.0112NoNoYesYes50
1325x37 6x55 a1_on2.4074213.2772NoNoNoNo35
1335x37 6x59 a1_on010.2637NoNoNoYes34
1345x58 6x41 a1_on4.3269611.1785YesYesNoNo98
1355x69 6x33 a1_on035.275NoNoNoNo47
1365x69 5x70 a1_on031.8013NoNoNoNo45
1375x66 5x70 a1_on1.4396528.3109NoNoNoNo55
1385x62 5x66 a1_on2.8433221.2963YesNoNoNo65
1395x62 6x30 a1_on5.6826414.2368YesNoNoNo66
1406x27 6x30 a1_on4.3029710.7015NoNoNoNo16
1416x47 7x48 a1_on011.532NoNoNoNo86
1426x51 7x37 a1_on1.4076616.2009NoYesNoNo65
1436x54 7x37 a1_on014.4276NoNoNoNo45
1448x54 8x55 a1_on011.4703NoNoNoNo75
1452x46 3x43 a1_on6.686419.3996YesYesNoNo98

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x351x39Shared17.9614.591122
1x357x38Shared8.466.041121
1x392x57Shared8.29.561122
1x397x42Shared12.3114.771121
2x567x42Shared4.154.150021
2x577x42Shared6.633.981121
2x607x42Shared4.394.390021
3x32LigShared6.876.870010
3x334x60Shared3.283.281112
3x33E2x52Shared4.874.871111
3x335x39Shared5.864.691112
3x33LigShared3.653.651110
3x366x48Shared3.644.850012
3x36LigShared11.666.80010
4x60E2.I175Shared5.083.391122
4x605x39Shared12.529.741122
E2.I175E2x52Shared11.37.540121
E2x52LigShared20.0623.281110
E2.E172LigShared7.867.860010
5x375x40Shared4.334.330121
5x376x55Shared4.215.610121
5x395x40a1_on4.7901121
5x405x43Shared7.015.610112
6x487x41Shared6.068.492121
6x517x37Shared3.153.151112
6x517x38a1_on4.2801111
6x517x41Shared7.377.371111
6x51LigShared10.9416.421110
6x55LigShared9.059.950110
7x34E3.K265Shared4.56.010012
7x387x42a1_on3.9801011
7x38LigShared6.584.71010
7x42LigShared6.7810.171110
3x29E2x52a1_on2.7700021
E2.E172E2x51a1_on2.5400012
2x63E2x52Shared2.515.020021
2x563x32a1_on_allo04.810021
3x29E2.I175a1_on_allo03.250022
3x335x40a1_on_allo04.241111
5x39E2.I175a1_on_allo03.631122
5x406x55a1_on_allo08.410111
5x40Liga1_on_allo03.730110
7x41Liga1_on_allo04.860110
7x34Liga1_on_allo01.940010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
a1_on_allo 7LD3-A1-Adenosine-PubChem 25263603-Gi2/&β;1/&γ;2
a1_on 7LD4-A1-Adenosine-Gi2/&β;1/&γ;2
Network Difference
Value a1_on_allo a1_on
Imin 3.07 3.07
Number of Linked Nodes 265 269
Number of Specific Nodes 6 (2.26%) 10  (3.72%)
Number of Shared Nodes 259 (97.74%) 259  (96.28%)
Number of Links 309 297
Number of Specific Links 87 (28.16%) 75  (25.25%)
Number of Shared Links 222 (71.84%) 222  (74.75%)
Number of Hubs 46 36
Number of Specific Hubs 18 (39.13%) 8  (22.22%)
Number of Shared Hubs 28 (60.87%) 28  (77.78%)
Average % Shared Neighbours (Jaccard) 58.87
Average % Shared Neighbours (Otsuka) 68.61
Average % Shared Neighbours (Overlap Coefficient) 79.09
Average % Shared Cliques (k3-6) 82.56
Graphlets Similarity 0.600879
Paths Difference
Value a1_on_allo a1_on
Number Of Nodes in MetaPath 90 86
Specific Nodes in MetaPath 41 (45.56%) 37  (43.02%)
Shared Nodes in MetaPath 259 (97.74%) 259  (97.74%)
Number Of Links MetaPath 95 87
Specific Links in MetaPath 58 (61.05%) 50  (57.47%)
Shared Links in MetaPath 222 (71.84%) 222  (71.84%)
Number of Shortest Paths 73228 49425
Length Of Smallest Path 3 3
Average Path Length 13.3392 13.6028
Length of Longest Path 30 33
Minimum Path Strength 1.24 1.4
Average Path Strength 6.47704 6.15623
Maximum Path Strength 19.85 17.04
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.923502 0.92871
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 5 3.84615
Average % Of Corr. Nodes 50.0008 52.2151
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 49.1415 39.7394
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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Download a1_on_ortoallo.zip<



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