Orange: nodes, hubs and links specific of alicarboxylic_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alicarboxylic_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner alicarboxylic_off Avg Int. Strength alicarboxylic_on Avg Int. Strength alicarboxylic_off Num Of Links alicarboxylic_on Num Of Links ConSurf
11x23 alicarboxylic_off00433
21x50 alicarboxylic_off00439
31x57 alicarboxylic_off10025637
43x29 alicarboxylic_off500416
53x36 alicarboxylic_off1000427
63x38 alicarboxylic_off500427
73x54 alicarboxylic_off00438
8I2x57 alicarboxylic_off10050426
94x41 alicarboxylic_off00423
10E2x50 alicarboxylic_off500429
115x43 alicarboxylic_off1000425
125x61 alicarboxylic_off00528
137x38 alicarboxylic_off10025425
147x45 alicarboxylic_off1000439
157x52 alicarboxylic_off00437
168x50 alicarboxylic_off1000628
17Lig Shared10010011110
181x39 Shared10050568
192x42 Shared1000448
202x44 Shared1008.33333546
212x53 Shared10025547
222x64 Shared10050454
23E1x50 Shared100100568
24E1x52 Shared10050457
253x37 Shared10050557
263x42 Shared10050547
273x51 Shared10041.6667448
283x56 Shared00446
29I2x52 Shared1000444
30E2 Shared10010016163
315x47 Shared066.6667568
326x44 Shared10075459
336x48 Shared100100658
346x51 Shared10050546
356x52 Shared10050658
366x55 Shared100100766
377x34 Shared10075555
387x42 Shared5041.6667447
397x53 Shared10066.6667569
40NT alicarboxylic_on050070
411x27 alicarboxylic_on00243
422x50 alicarboxylic_on050349
433x30 alicarboxylic_on00355
444x50 alicarboxylic_on025349
455x51 alicarboxylic_on00346
465x58 alicarboxylic_on050348
47I3 alicarboxylic_on041.6667064
486x36 alicarboxylic_on00348
49E3 alicarboxylic_on050167
507x28 alicarboxylic_on00344
517x49 alicarboxylic_on5066.6667349
527x54 alicarboxylic_on0100277
   
Orange: nodes, hubs and links specific of alicarboxylic_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alicarboxylic_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner alicarboxylic_off Recurrence alicarboxylic_on Recurrence alicarboxylic_off Hub1? alicarboxylic_on Hub1? alicarboxylic_off Hub2? alicarboxylic_on Hub2? ConSurf1 ConSurf2
1E1x50 Lig alicarboxylic_off17.72820YesYesYesYes80
21x23 7x28 alicarboxylic_off12.86290YesNoNoYes34
31x27 7x31 alicarboxylic_off20.85650NoYesNoNo34
46x58 7x31 alicarboxylic_off22.76245.20167NoNoNoNo44
56x58 7x34 alicarboxylic_off15.60920NoNoYesYes45
67x34 7x38 alicarboxylic_off17.51912.50838YesYesYesNo55
77x38 Lig alicarboxylic_off18.21472.74768YesNoYesYes50
81x39 Lig alicarboxylic_off12.04664.51421YesYesYesYes80
91x39 7x39 alicarboxylic_off13.17653.92464YesYesNoNo85
102x53 2x54 alicarboxylic_off10.85240YesYesNoNo75
111x50 2x50 alicarboxylic_off1006.30248YesNoNoYes99
121x50 2x47 alicarboxylic_off94.08930YesNoNoNo98
132x47 7x53 alicarboxylic_off93.12020NoNoYesYes89
141x57 7x53 alicarboxylic_off74.20190YesNoYesYes79
157x53 8x50 alicarboxylic_off16.26860YesYesYesNo98
163x36 7x42 alicarboxylic_off36.13190YesNoYesYes77
173x36 6x48 alicarboxylic_off26.37310YesNoYesYes78
186x44 6x48 alicarboxylic_off19.41291.41409YesYesYesYes98
193x43 6x44 alicarboxylic_off28.01770NoNoYesYes89
203x43 7x52 alicarboxylic_off25.53680NoNoYesNo87
216x36 7x52 alicarboxylic_off20.58718.5585NoYesYesNo87
223x46 6x36 alicarboxylic_off18.18250NoNoNoYes98
232x42 3x46 alicarboxylic_off16.88380YesYesNoNo89
242x53 3x35 alicarboxylic_off10.92081.99495YesYesNoNo78
252x49 3x35 alicarboxylic_off14.67230NoNoNoNo88
262x49 3x38 alicarboxylic_off13.24090NoNoYesNo87
27E1x50 E1x52 alicarboxylic_off10.56290.106601YesYesYesYes87
283x36 3x37 alicarboxylic_off15.45646.36993YesNoYesYes77
293x36 6x51 alicarboxylic_off23.86410YesNoYesYes76
306x55 7x34 alicarboxylic_off12.79860.430753YesYesYesYes65
316x48 6x52 alicarboxylic_off47.61960YesYesYesYes88
326x51 6x52 alicarboxylic_off10.63530.408998YesYesYesYes68
33I2x52 I2x57 alicarboxylic_off57.45482.56059YesYesYesNo46
343x56 I2x57 alicarboxylic_off53.67510YesYesYesNo66
353x55 5x64 alicarboxylic_off13.30920NoNoNoNo84
363x37 5x43 alicarboxylic_off14.96184.33799YesYesYesNo75
374x60 5x39 alicarboxylic_off15.86651.57725NoNoNoNo86
386x51 7x37 alicarboxylic_off32.8870YesYesNoNo67
396x54 7x37 alicarboxylic_off30.24932.66066NoNoNoNo57
406x54 6x57 alicarboxylic_off26.26860NoNoNoNo55
416x57 7x30 alicarboxylic_off24.26220NoNoNoNo55
426x61 7x30 alicarboxylic_off20.61520NoNoNoNo35
436x61 7x27 alicarboxylic_off18.58873.97903NoNoNoNo33
446x62 7x27 alicarboxylic_off16.55810NoNoNoNo33
455x61 6x34 alicarboxylic_off10.46640YesNoNoNo86
464x59 4x60 alicarboxylic_off13.21670.931123NoNoNoNo48
475x39 5x43 alicarboxylic_off12.85893.42209NoNoYesNo65
486x44 7x45 alicarboxylic_off10.9650YesYesYesNo99
491x27 7x28 Shared19.199819.0249NoYesNoYes34
507x42 Lig Shared34.471223.3433YesYesYesYes70
512x53 7x42 Shared45.231224.355YesYesYesYes77
522x53 7x46 Shared37.209545.8469YesYesNoNo78
532x50 7x46 Shared41.998445.5989NoYesNoNo98
541x57 2x40 Shared68.745564.6956YesNoNoNo78
552x37 2x40 Shared68.813863.6906NoNoNoNo78
562x37 I2x52 Shared61.117862.642NoNoYesYes74
572x50 7x49 Shared62.69443.9934NoYesNoYes99
586x48 7x45 Shared53.140363.3272YesYesYesNo89
597x45 7x49 Shared63.112262.6354YesNoNoYes99
606x52 6x55 Shared32.746321.492YesYesYesYes86
613x55 3x56 Shared48.898325.8017NoNoYesYes86
623x51 3x55 Shared34.519524.6138YesYesNoNo88
633x51 5x61 Shared23.872113.7275YesYesYesNo88
645x33 6x62 Shared14.519512.0741NoNoNoNo13
655x32 5x33 Shared10.410110.5448NoNoNoNo21
666x55 E2 Shared26.875834.4994YesYesYesYes63
673x32 Lig alicarboxylic_on0.36992426.9199NoNoYesYes70
68E2 Lig alicarboxylic_on044.0434YesYesYesYes30
69E2 NT alicarboxylic_on038.3892YesYesNoYes30
707x28 NT alicarboxylic_on024.9793NoYesNoYes40
717x49 7x53 alicarboxylic_on0100NoYesYesYes99
722x43 7x53 alicarboxylic_on1.5158881.9149NoNoYesYes89
732x43 7x54 alicarboxylic_on081.4602NoNoNoYes87
741x57 7x54 alicarboxylic_on070.2606YesNoNoYes77
753x53 I2x52 alicarboxylic_on1.5319729.1955NoNoYesYes74
763x49 3x53 alicarboxylic_on023.7654NoNoNoNo87
772x42 3x49 alicarboxylic_on021.3723YesYesNoNo88
782x42 3x45 alicarboxylic_on1.3671112.0807YesYesNoNo87
793x45 4x49 alicarboxylic_on010.8776NoNoNoNo77
802x56 3x32 alicarboxylic_on014.9611NoNoNoNo67
812x56 3x28 alicarboxylic_on4.0973113.4599NoNoNoNo65
822x59 3x28 alicarboxylic_on1.4354612.7029NoNoNoNo75
834x61 E2 alicarboxylic_on1.3108216.906NoNoYesYes33
843x30 4x61 alicarboxylic_on015.394NoYesNoNo53
855x44 E2 alicarboxylic_on019.1663NoNoYesYes53
865x44 6x52 alicarboxylic_on5.5729819.2903NoNoYesYes58
876x51 6x55 alicarboxylic_on8.8902315.803YesYesYesYes66
886x51 7x41 alicarboxylic_on2.0788132.3783YesYesNoNo68
896x48 7x41 alicarboxylic_on031.9932YesYesNoNo88
907x34 E2 alicarboxylic_on5.922815.84YesYesYesYes53
916x51 7x34 alicarboxylic_on017.2649YesYesYesYes65
925x47 6x52 alicarboxylic_on3.5022144.2044YesYesYesYes88
935x47 6x48 alicarboxylic_on7.0486535.7416YesYesYesYes88
943x50 7x53 alicarboxylic_on011.0691NoNoYesYes99
953x52 I2x52 alicarboxylic_on033.9947NoNoYesYes54
963x52 3x56 alicarboxylic_on032.8373NoNoYesYes56
973x54 5x61 alicarboxylic_on0.39002812.4918YesNoYesNo88
987x52 7x53 alicarboxylic_on013.0074YesNoYesYes79
996x58 E2 alicarboxylic_on9.1757110.3794NoNoYesYes43
1006x62 E2 alicarboxylic_on013.6101NoNoYesYes33
1012x53 3x32 alicarboxylic_on023.7436YesYesNoNo77

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x31Ligalicarboxylic_off5.201010
1x39LigShared6.6755.08750110
2x60LigShared10.6255.924170110
2x64LigShared17.4357.479171110
E1x50Ligalicarboxylic_off10.16501210
3x29LigShared27.396.924171010
3x32LigShared11.9957.195831010
E2x50Ligalicarboxylic_off4.7201210
7x38LigShared13.85515.37671010
7x42LigShared4.5356.754171110
1x312x64Shared11.7856.125831011
1x351x39Shared4.697.024170021
1x352x64Shared10.558.499170021
1x392x57Shared7.033.905830112
1x397x39Shared11.135.770112
2x532x57alicarboxylic_off9.7401022
2x537x42Shared158.821021
2x563x28Shared5.855.00750022
2x59E1x52Shared16.767.200831222
2x593x28Shared9.1159.891671222
2x63E1x50Shared4.948.493330021
2x647x38alicarboxylic_off5.1401111
E1x50E1x52Shared12.548.295831212
3x28E1x50alicarboxylic_off4.5200021
E1x50E2x50Shared9.1410.66671211
3x22E2Shared6.83.488331121
3x25E2x50Shared7.284.550221
3x29E2x50alicarboxylic_off7.6601011
3x29E2x52alicarboxylic_off5.9601011
3x327x42alicarboxylic_off7.3101011
3x334x57alicarboxylic_off6.9201112
3x334x61alicarboxylic_off11.16501112
3x33E2Shared8.715.091111
3x363x37Shared5.863.810012
3x366x48alicarboxylic_off8.5300012
3x366x51alicarboxylic_off4.6900012
3x367x42alicarboxylic_off9.13500011
3x376x55alicarboxylic_off5.65501022
4x61E2Shared7.185.02251121
4x644x68alicarboxylic_off5.1901122
4x64E2Shared6.393.460831121
4x68E2Shared5.821.191021
4x68E2x51alicarboxylic_off4.7601022
E2E2Shared20.30513.71421111
E2E2x51Shared9.79.206671112
E2E2x52alicarboxylic_off11.5101111
7x34E2x52alicarboxylic_off8.0501121
5x39E2alicarboxylic_off9.43501021
6x55E2Shared11.1555.888331121
6x59E2alicarboxylic_off5.6701021
6x58E2Shared12.586.34751121
7x34E2Shared5.276.868331121
5x406x55Shared11.864.28250122
6x516x55Shared9.265.40251122
6x557x34Shared5.1410.78671122
6x587x34alicarboxylic_off8.2301122
7x347x38Shared13.8911.69671121
7x357x38alicarboxylic_off5.63500021
3x294x65alicarboxylic_off4.38501012
1x362x61alicarboxylic_off3.100022
3x26E2alicarboxylic_off2.9401021
1x392x61Shared2.423.345830112
3x21E2alicarboxylic_off2.1100021
2x67Ligalicarboxylic_off0.4200010
3x33Ligalicarboxylic_on04.3551110
E2x52Ligalicarboxylic_on07.33251010
E2Ligalicarboxylic_on04.119171110
1x397x42alicarboxylic_on05.651670111
1x427x42alicarboxylic_on04.565830021
2x533x32alicarboxylic_on05.225831021
2x563x32alicarboxylic_on05.5650021
2x59E1x50alicarboxylic_on04.11751221
2x602x64alicarboxylic_on04.004170111
3x25E1x50alicarboxylic_on07.620830221
6x62E2alicarboxylic_on05.015830121
6x517x34alicarboxylic_on05.12751122
5x40E2alicarboxylic_on04.8550121
NTNTalicarboxylic_on024.26670122
E2NTalicarboxylic_on027.20831112
2x67NTalicarboxylic_on08.2150012
3x223x26alicarboxylic_on04.86251122
3x36Ligalicarboxylic_on05.604170010
5x44E2alicarboxylic_on04.286670121
3x264x65alicarboxylic_on03.681022
1x362x64alicarboxylic_on01.561670021
3x21E1x50alicarboxylic_on01.406670021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
alicarboxylic_off succinate_off
alicarboxylic_on succinate_on
hca_on
Network Difference
Value alicarboxylic_off alicarboxylic_on
Imin 4.46 3.7825
Number of Linked Nodes 265 278
Number of Specific Nodes 5 (1.89%) 18  (6.47%)
Number of Shared Nodes 260 (98.11%) 260  (93.53%)
Number of Links 308 307
Number of Specific Links 144 (46.75%) 143  (46.58%)
Number of Shared Links 164 (53.25%) 164  (53.42%)
Number of Hubs 39 36
Number of Specific Hubs 16 (41.03%) 13  (36.11%)
Number of Shared Hubs 23 (58.97%) 23  (63.89%)
Average % Shared Neighbours (Jaccard) 37.69
Average % Shared Neighbours (Otsuka) 46.80
Average % Shared Neighbours (Overlap Coefficient) 54.77
Average % Shared Cliques (k3-6) 79.38
Graphlets Similarity 0.622018
Paths Difference
Value alicarboxylic_off alicarboxylic_on
Number Of Nodes in MetaPath 63 49
Specific Nodes in MetaPath 33 (52.38%) 19  (38.78%)
Shared Nodes in MetaPath 260 (98.11%) 260  (98.11%)
Number Of Links MetaPath 66 53
Specific Links in MetaPath 48 (72.73%) 35  (66.04%)
Shared Links in MetaPath 164 (53.25%) 164  (53.25%)
Number of Shortest Paths 52483 77275
Length Of Smallest Path 3 3
Average Path Length 14.1198 14.8736
Length of Longest Path 36 31
Minimum Path Strength 1.27 0.7325
Average Path Strength 8.21559 5.89252
Maximum Path Strength 22.4125 15.2578
Minimum Path Correlation 0.7 0.700833
Average Path Correlation 0.91028 0.900458
Maximum Path Correlation 0.99 0.9875
Minimum % Of Corr. Nodes 3.84615 3.44828
Average % Of Corr. Nodes 42.3904 34.4329
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 46.9527 47.9372
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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