Orange: nodes, hubs and links specific of alpha1a_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alpha1a_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner alpha1a_off Avg Int. Strength alpha1a_on Avg Int. Strength alpha1a_off Num Of Links alpha1a_on Num Of Links ConSurf
11x56 alpha1a_off3.1453.465418
22x50 alpha1a_off6.617.52611439
32x57 alpha1a_off4.5843.305538
43x28 alpha1a_off4.75254.55111435
53x37 alpha1a_off3.38753.17222437
63x41 alpha1a_off4.3584.27667516
74x53 alpha1a_off2.98753.50167438
84x60 alpha1a_off4.8851.58417
94x64 alpha1a_off3.8650406
105x39 alpha1a_off3.81754.68438
11Lig Shared6.343579.0993314100
122x42 Shared3.6284.687558
13E1x50 Shared5.0844.32445598
14I2x53 Shared5.7758.24375447
155x36 Shared6.38753.95542446
165x47 Shared5.4387.27067558
175x58 Shared5.5924.264559
186x44 Shared5.0964.43583549
196x48 Shared4.8667.14556568
206x51 Shared4.9246.482557
216x52 Shared4.996.33111667
226x55 Shared3.574.667557
237x42 Shared7.3855.86444467
248x50 Shared4.25758.62375448
251x31 alpha1a_on01.14958043
261x43 alpha1a_on2.912.635245
271x46 alpha1a_on1.723333.34792348
281x50 alpha1a_on4.446.65333359
291x52 alpha1a_on4.874.29167147
30I1x50 alpha1a_on4.545.932258
312x40 alpha1a_on6.973.19875148
322x45 alpha1a_on4.8855.17167249
332x46 alpha1a_on2.443333.62208349
342x56 alpha1a_on3.284.76167348
352x66 alpha1a_on2.016671.23375345
36E1x51 alpha1a_on2.672.17625143
37E1x52 alpha1a_on7.024.85145
383x42 alpha1a_on1.7356.339257
393x49 alpha1a_on4.135.83833349
403x51 alpha1a_on8.6055.59567258
41I2x57 alpha1a_on4.486.61333366
424x50 alpha1a_on5.425.32167249
434x57 alpha1a_on5.166673.79348
445x48 alpha1a_on3.1653.236256
456x26 alpha1a_on01.02208040
467x37 alpha1a_on2.115.50833245
477x49 alpha1a_on4.965.0325249
487x53 alpha1a_on3.366674.53583369
498x49 alpha1a_on2.653.07917147
508x54 alpha1a_on6.233336.10208347
   
Orange: nodes, hubs and links specific of alpha1a_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alpha1a_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner alpha1a_off Recurrence alpha1a_on Recurrence alpha1a_off Hub1? alpha1a_on Hub1? alpha1a_off Hub2? alpha1a_on Hub2? ConSurf1 ConSurf2
12x60 Lig alpha1a_off20.81160NoNoYesYes70
27x38 Lig alpha1a_off10.62950.876532NoNoYesYes60
32x57 2x60 alpha1a_off18.52640YesNoNoNo87
42x57 7x42 alpha1a_off18.84350YesNoYesYes87
51x43 2x57 alpha1a_off26.87059.62995NoYesYesNo58
61x50 7x50 alpha1a_off56.71761.40007NoYesNoNo99
72x50 3x39 alpha1a_off75.40660YesNoNoNo99
83x39 7x45 alpha1a_off79.70880NoNoNoNo99
96x48 6x51 alpha1a_off70.08780YesYesYesYes87
106x51 Lig alpha1a_off66.11919.24126YesYesYesYes70
116x48 6x52 alpha1a_off68.90869.8243YesYesYesYes87
121x47 1x51 alpha1a_off16.16790NoNoNoNo64
131x43 1x47 alpha1a_off21.52730NoYesNoNo56
141x56 8x50 alpha1a_off29.66010YesNoYesYes88
157x53 8x50 alpha1a_off39.01270NoYesYesYes98
161x53 7x53 alpha1a_off43.33120NoNoNoYes99
171x53 7x50 alpha1a_off52.3260NoNoNoNo99
181x60 8x53 alpha1a_off12.63830NoNoNoNo67
191x56 8x53 alpha1a_off15.11870YesNoNoNo87
202x46 3x46 alpha1a_off50.95150NoYesNoNo99
212x46 3x43 alpha1a_off60.89790NoYesNoNo98
226x44 6x48 alpha1a_off97.51140YesYesYesYes98
235x461 Lig alpha1a_off22.88550NoNoYesYes60
243x37 5x461 alpha1a_off21.12881.36041YesNoNoNo76
253x28 Lig alpha1a_off33.05140YesNoYesYes50
263x28 E1x50 alpha1a_off13.22380YesNoYesYes58
273x37 3x41 alpha1a_off10.28790YesNoYesNo76
283x40 6x44 alpha1a_off17.3390NoNoYesYes89
293x41 5x50 alpha1a_off12.78460YesNoNoNo69
303x44 5x50 alpha1a_off15.78562.74858NoNoNoNo69
313x44 5x53 alpha1a_off14.07771.37627NoNoNoNo66
326x44 6x45 alpha1a_off48.06440YesYesNoNo95
336x41 6x45 alpha1a_off45.53510NoNoNoNo85
346x41 I3.V234 alpha1a_off43.07090NoNoNoNo82
355x58 I3.V234 alpha1a_off44.32340YesYesNoNo92
365x53 5x57 alpha1a_off10.61320NoNoNoNo66
375x58 5x61 alpha1a_off29.87150YesYesNoNo99
38I2x53 I2x57 alpha1a_off15.4443.05398YesYesNoYes76
394x57 4x58 alpha1a_off73.89392.71685NoYesNoNo84
404x58 4x61 alpha1a_off71.46230NoNoNoNo45
414x61 5x39 alpha1a_off66.88350NoNoYesNo58
424x64 5x39 alpha1a_off26.84610YesNoYesNo68
434x64 5x36 alpha1a_off21.88520YesNoYesYes66
445x39 E2.N179 alpha1a_off29.60310YesNoNoNo85
455x36 E2.N179 alpha1a_off21.54360YesYesNoNo65
465x36 5x37 alpha1a_off38.07740YesYesNoNo64
475x37 6x60 alpha1a_off32.68542.70892NoNoNoNo45
483x54 5x61 alpha1a_off26.91122.31627NoNoNoNo89
493x54 I3.L227 alpha1a_off21.27520NoNoNoNo83
505x71 I3.L227 alpha1a_off18.67270NoNoNoNo43
515x71 I3.D224 alpha1a_off12.51630NoNoNoNo43
523x43 6x40 alpha1a_off21.18580NoNoNoNo88
536x40 7x52 alpha1a_off18.12780NoNoNoNo88
546x39 7x52 alpha1a_off12.42688.23781NoNoNoNo78
556x60 6x61 alpha1a_off21.85261.35644NoNoNoNo54
566x61 E3.P299 alpha1a_off16.41180NoNoNoNo42
57E3.D300 E3.P299 alpha1a_off10.95480NoNoNoNo12
583x40 5x50 alpha1a_off14.57384.11296NoNoNoNo89
591x50 2x50 Shared71.576135.1208NoYesYesNo99
606x48 7x45 Shared83.677694.2133YesYesNoNo89
616x52 Lig Shared10011.9105YesYesYesYes70
622x39 3x49 Shared15.004932.7172NoNoNoYes89
632x42 3x49 Shared41.403747.5786YesYesNoYes89
642x42 3x46 Shared50.081352.4848YesYesNoNo89
653x43 6x44 Shared79.879621.4493NoNoYesYes89
665x47 6x44 Shared40.704320.422YesYesYesYes89
675x47 6x52 Shared42.265815.2858YesYesYesYes87
682x53 2x56 Shared21.299613.5605NoNoNoYes88
692x56 3x28 Shared12.939258.3588NoYesYesNo85
702x56 3x32 Shared13.435334.9542NoYesNoNo87
713x32 Lig Shared15.281435.7197NoNoYesYes70
722x53 3x35 Shared10.678311.3196NoNoNoNo86
733x33 Lig Shared83.295413.3542NoNoYesYes60
743x33 4x57 Shared81.091412.204NoNoNoYes68
753x49 I2x53 Shared24.097311.7162NoYesYesYes97
761x46 1x50 Shared15.118722.7859NoYesNoYes89
777x42 Lig Shared28.529647.2693YesYesYesYes70
782x54 2x57 alpha1a_on012.3468NoNoYesNo78
791x46 2x54 alpha1a_on013.6795NoYesNoNo87
802x46 2x50 alpha1a_on037.4926NoYesYesNo99
812x46 7x49 alpha1a_on053.3574NoYesNoYes99
827x49 7x53 alpha1a_on0100NoYesNoYes99
833x46 7x53 alpha1a_on048.1339NoNoNoYes99
842x39 2x40 alpha1a_on034.8511NoNoNoYes88
852x40 I1x50 alpha1a_on030.1551NoYesNoYes88
868x50 I1x50 alpha1a_on019.2758YesYesNoYes88
877x54 8x50 alpha1a_on015.7181NoNoYesYes78
887x54 8x54 alpha1a_on2.5536814.4053NoNoNoYes77
891x52 8x54 alpha1a_on2.5536810.6691NoYesNoYes77
902x46 3x42 alpha1a_on9.3607719.4225NoYesNoYes97
917x45 7x49 alpha1a_on094.6298NoNoNoYes99
926x48 Lig alpha1a_on083.2348YesYesYesYes80
932x56 7x42 alpha1a_on037.4926NoYesYesYes87
942x59 3x28 alpha1a_on054.4759NoNoYesNo55
952x59 E1x50 alpha1a_on052.3857NoNoYesYes58
967x39 7x42 alpha1a_on7.7423512.5213NoNoYesYes67
977x35 7x39 alpha1a_on011.3315NoNoNoNo56
98E1x50 E1x52 alpha1a_on2.8220611.1411YesYesNoYes85
99E1x50 E1x51 alpha1a_on018.895YesYesNoYes83
1003x38 4x53 alpha1a_on7.4414410.2526NoNoYesNo88
1013x37 4x53 alpha1a_on8.1001910.6889YesNoYesNo78
1023x50 7x53 alpha1a_on032.9989NoNoNoYes99
1036x40 7x53 alpha1a_on033.1972NoNoNoYes89
1045x58 6x40 alpha1a_on032.3801YesYesNoNo98
1053x47 5x58 alpha1a_on6.286626.3079NoNoYesYes99
1063x50 5x58 alpha1a_on037.1356NoNoYesYes99
1073x47 5x57 alpha1a_on022.8017NoNoNoNo96
1083x51 5x57 alpha1a_on8.8565421.128NoYesNoNo86
1095x43 Lig alpha1a_on2.6268713.0131NoNoYesYes70
1105x39 5x43 alpha1a_on011.9542YesNoNoNo87
1115x58 6x37 alpha1a_on039.198YesYesNoNo90
1125x62 6x37 alpha1a_on037.2863NoNoNoNo50
1135x62 5x66 alpha1a_on033.4193NoNoNoNo55
1145x66 6x30 alpha1a_on031.2894NoNoNoNo50
1156x30 6x33 alpha1a_on016.9317NoNoNoNo00
1167x52 7x53 alpha1a_on012.3468NoNoNoYes89
1175x47 6x49 alpha1a_on4.1558214.8297YesYesNoNo87
1186x49 6x53 alpha1a_on012.204NoNoNoNo76
1196x51 6x52 alpha1a_on0.38223811.7479YesYesYesYes77
1206x51 7x34 alpha1a_on019.2321YesYesNoNo74
1216x54 7x34 alpha1a_on016.8366NoNoNoNo54
1226x54 7x37 alpha1a_on6.5631114.0523NoNoNoYes55
1236x53 6x57 alpha1a_on010.8793NoNoNoNo65
1246x29 6x33 alpha1a_on012.5689NoNoNoNo00
1256x28 6x29 alpha1a_on010.3756NoNoNoNo00
1265x69 6x30 alpha1a_on012.91NoNoNoNo50
1275x69 6x26 alpha1a_on010.7246NoNoNoYes50
1282x66 E1x51 alpha1a_on014.6155NoYesNoYes53
1293x43 7x53 alpha1a_on017.7726NoNoNoYes89

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x60Ligalpha1a_off2.7900010
2x63Ligalpha1a_off10.1700010
2x64Ligalpha1a_off3.6900010
3x28Ligalpha1a_off7.3901010
3x32LigShared8.8114.35671110
3x33LigShared4.1414.82330010
3x36LigShared5.898.606670110
5x43LigShared4.184.641670010
5x461Ligalpha1a_off2.7900010
6x51LigShared9.0410.40831110
6x52LigShared4.523.331671110
6x55LigShared5.245.606671110
7x38LigShared15.8115.990110
7x42LigShared4.359.2251110
2x563x28Shared2.453.156670121
2x563x32Shared2.927.788330121
2x572x60alpha1a_off301521
2x577x39alpha1a_off2.2801522
2x577x42alpha1a_off11.7201521
2x647x35Shared9.457.20012
3x28E1x50alpha1a_off6.5601012
E1x50E2x50Shared5.227.183331222
3x28E2x50alpha1a_off2.6101012
3x327x42Shared5.755.751111
3x334x57Shared4.855.3850012
3x375x461Shared6.44.796674021
3x406x44alpha1a_off7.5400022
5x406x55Shared3.043.9950021
5x446x52Shared2.773.0250021
5x475x48Shared5.165.360122
5x476x44Shared3.223.751670122
5x476x52Shared13.9316.77670121
6x446x48alpha1a_off6.0100121
6x486x51alpha1a_off6.0101111
6x486x52Shared3.017.351111
6x487x41Shared7.047.973331112
6x487x45Shared2.269.6051112
6x516x52Shared3.223.3951111
6x516x55Shared3.738.4251111
6x517x37alpha1a_off2.6201112
6x526x55alpha1a_off2.4901111
6x556x56alpha1a_off3.3501112
7x347x38alpha1a_off5.3600021
7x357x38alpha1a_off2.4800021
7x397x42Shared7.723.2151021
2x567x42alpha1a_on04.626670121
2x593x28alpha1a_on07.5650021
2x63E1x50alpha1a_on03.013330012
3x283x29alpha1a_on02.931671012
3x366x48alpha1a_on04.351670111
3x406x48alpha1a_on09.590021
6x55E2x52alpha1a_on03.626671112
5x486x52alpha1a_on04.108330121
6x48Ligalpha1a_on04.003331110
6x517x38alpha1a_on05.893331111
7x357x39alpha1a_on03.673330022
7x387x42alpha1a_on08.766670111
2x607x42alpha1a_on03.603330011
5x395x43alpha1a_on04.663332621
5x446x56alpha1a_on03.380022
6x517x34alpha1a_on04.288331112
2x59E1x50alpha1a_on02.5050022
5x416x55alpha1a_on01.681670021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
alpha1a_off 7YMJ-Alpha1A-Tamsulosin
alpha1a_on 7EJ0-α2a-L-Norepinephrine-Go/β1/γ2
7EJ8-α2a-Brimonidine-Go/β1/γ2
7EJA-α2a-Dexmedetomidine-Go/β1/γ2
7EJK-α2a-Oxymetazoline-Go/β1/γ2
7W6P-α2a-N-pyridin-4-ylisoquinolin-4-amine-Go/β1/γ2
7W7E-α2a-PubChem 164946676-Go/β1/γ2
Network Difference
Value alpha1a_off alpha1a_on
Imin 2.26 2.85667
Number of Linked Nodes 241 269
Number of Specific Nodes 34 (14.11%) 62  (23.05%)
Number of Shared Nodes 207 (85.89%) 207  (76.95%)
Number of Links 245 293
Number of Specific Links 150 (61.22%) 198  (67.58%)
Number of Shared Links 95 (38.78%) 95  (32.42%)
Number of Hubs 24 40
Number of Specific Hubs 10 (41.67%) 26  (65.00%)
Number of Shared Hubs 14 (58.33%) 14  (35.00%)
Average % Shared Neighbours (Jaccard) 19.16
Average % Shared Neighbours (Otsuka) 25.52
Average % Shared Neighbours (Overlap Coefficient) 31.83
Average % Shared Cliques (k3-6) 53.23
Graphlets Similarity 0.560745
Paths Difference
Value alpha1a_off alpha1a_on
Number Of Nodes in MetaPath 72 70
Specific Nodes in MetaPath 37 (51.39%) 35  (50.00%)
Shared Nodes in MetaPath 207 (85.89%) 207  (85.89%)
Number Of Links MetaPath 77 71
Specific Links in MetaPath 58 (75.32%) 52  (73.24%)
Shared Links in MetaPath 95 (38.78%) 95  (38.78%)
Number of Shortest Paths 34387 55216
Length Of Smallest Path 3 3
Average Path Length 12.7507 13.2317
Length of Longest Path 30 27
Minimum Path Strength 1.365 0.557222
Average Path Strength 4.66953 4.93504
Maximum Path Strength 12.99 15.4067
Minimum Path Correlation 0.7 0.703333
Average Path Correlation 0.916221 0.916718
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 5 4
Average % Of Corr. Nodes 48.5203 42.0614
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 38.439 47.0318
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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