Orange: nodes, hubs and links specific of alpha2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alpha2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner alpha2_off Avg Int. Strength alpha2_on Avg Int. Strength alpha2_off Num Of Links alpha2_on Num Of Links ConSurf
1NT alpha2_off7.354440904
22x57 alpha2_off6.413.63333438
33x24 alpha2_off9.897513.4425
43x49 alpha2_off8.0757.49333439
53x50 alpha2_off7.816.62429
64x50 alpha2_off5.4358.51639
7E2 alpha2_off11.16575.93667735
86x52 alpha2_off12.2411.8833438
96x55 alpha2_off10.0959.63667438
10E3 alpha2_off7.222.735524
117x38 alpha2_off8.5812.64436
127x39 alpha2_off7.30756.37667438
138x49 alpha2_off7.59759.195428
14Lig Shared11.62117.650919110
152x42 Shared4.684.39833668
16E1x50 Shared9.461434.995769
173x28 Shared6.7726.125545
183x42 Shared6.75257.1125448
193x51 Shared7.68756.39459
20I2x57 Shared12.37210.5775548
215x39 Shared98.614457
225x47 Shared11.74259.675468
235x58 Shared7.645.93449
246x44 Shared7.935.5925549
256x48 Shared9.186.31143478
266x51 Shared10.797.805548
277x42 Shared8.1887.86833568
287x53 Shared8.3025.095549
298x50 Shared11.67756.602459
301x50 alpha2_on9.403338.15349
312x50 alpha2_on10.4757.746259
322x56 alpha2_on6.0755.485249
333x35 alpha2_on8.247.0025347
34I2x53 alpha2_on10.676711.6975349
355x48 alpha2_on8.6655.5225247
365x54 alpha2_on4.414.4125249
375x62 alpha2_on3.6454.934256
386x49 alpha2_on8.5753.6125247
397x37 alpha2_on6.724.616356
   
Orange: nodes, hubs and links specific of alpha2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alpha2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner alpha2_off Recurrence alpha2_on Recurrence alpha2_off Hub1? alpha2_on Hub1? alpha2_off Hub2? alpha2_on Hub2? ConSurf1 ConSurf2
13x33 Lig alpha2_off11.65061.49095NoNoYesYes80
23x36 Lig alpha2_off42.42871.66185NoNoYesYes80
3E2x52 Lig alpha2_off21.01080NoNoYesYes70
46x52 Lig alpha2_off44.31699.26985YesNoYesYes80
57x38 Lig alpha2_off14.59330.995934YesNoYesYes60
65x39 E2x52 alpha2_off19.31880YesYesNoNo77
75x39 E2 alpha2_off14.90233.14102YesYesYesNo75
87x35 7x38 alpha2_off12.20970NoNoYesNo56
92x64 7x35 alpha2_off10.84140.777889NoNoNoNo65
101x39 7x39 alpha2_off12.81058.88679NoNoYesNo78
111x53 7x53 alpha2_off17.31770NoNoYesYes99
127x53 8x50 alpha2_off31.33720YesYesYesYes99
138x47 8x50 alpha2_off43.51267.74353NoNoYesYes99
146x33 8x47 alpha2_off51.60010NoNoNoNo89
156x33 6x37 alpha2_off51.75210NoNoNoNo88
163x46 6x37 alpha2_off54.72670NoNoNoNo98
172x42 3x49 alpha2_off70.92625.1211YesYesYesNo89
183x49 I2x53 alpha2_off76.55174.33143YesNoNoYes99
195x58 5x61 alpha2_off91.77270YesYesNoNo99
205x58 6x41 alpha2_off93.49914.13696YesYesNoNo98
213x43 6x41 alpha2_off95.29660NoNoNoNo98
223x43 6x44 alpha2_off96.38540NoNoYesYes99
233x36 6x48 alpha2_off42.49250NoNoYesYes88
246x48 6x52 alpha2_off58.14270.76021YesYesYesNo88
252x37 2x39 alpha2_off17.45751.59114NoNoNoNo88
262x39 3x49 alpha2_off10.62070NoNoYesNo89
272x37 2x38 alpha2_off15.73360NoNoNoNo87
282x38 4x39 alpha2_off14.00486.31151NoNoNoNo76
292x45 4x46 alpha2_off18.40161.54989NoNoNoNo99
302x45 4x50 alpha2_off12.62170NoNoYesNo99
313x33 4x57 alpha2_off10.61580NoNoNoNo88
324x38 4x39 alpha2_off10.53244.74984NoNoNoNo86
333x32 Lig Shared21.493933.9148NoNoYesYes90
341x50 2x50 Shared10.868355.5955NoYesNoYes99
351x50 7x50 Shared12.781136.7376NoYesNoNo99
361x53 7x50 Shared16.547732.8658NoNoNoNo99
372x42 3x46 Shared55.425621.8398YesYesNoNo89
383x52 I2x53 Shared87.591724.8748NoNoNoYes59
393x51 3x52 Shared88.508827.1613YesYesNoNo95
403x51 5x61 Shared91.981220.7201YesYesNoNo99
416x44 6x48 Shared10073.9407YesYesYesYes98
42I2x53 I2x57 Shared10.571616.041NoYesYesYes98
432x42 4x46 Shared19.321213.9431YesYesNoNo89
442x56 3x28 Shared19.779843.9448NoYesYesYes95
452x56 3x32 Shared20.6733.0308NoYesNoNo99
462x59 3x28 Shared13.136722.8711NoNoYesYes75
473x28 E1x50 Shared20.657740.9394YesYesYesYes59
482x60 7x42 Shared21.896123.5547NoNoYesYes88
497x42 Lig Shared31.420664.0167YesYesYesYes80
502x60 3x28 Shared21.050122.5057NoNoYesYes85
517x39 7x42 alpha2_on6.7927112.0455YesNoYesYes88
526x48 Lig alpha2_on0100YesYesYesYes80
536x48 7x45 alpha2_on067.1224YesYesNoNo89
547x45 7x49 alpha2_on063.1858NoNoNoNo99
552x50 7x49 alpha2_on059.5674NoYesNoNo99
561x46 1x50 alpha2_on018.0977NoNoNoYes89
571x46 2x54 alpha2_on2.018210.7608NoNoNoNo88
581x53 7x54 alpha2_on031.5517NoNoNoNo99
597x54 8x50 alpha2_on022.1934NoNoYesYes99
605x54 6x44 alpha2_on080.9476NoYesYesYes99
613x47 5x54 alpha2_on044.9231NoNoNoYes99
623x47 5x57 alpha2_on1.0250446.8384NoNoNoNo98
633x51 5x57 alpha2_on044.8936YesYesNoNo98
642x39 I2x57 alpha2_on8.3866710.7549NoNoYesYes88
655x54 5x58 alpha2_on035.4234NoYesYesYes99
665x58 6x40 alpha2_on034.7398YesYesNoNo99
676x40 7x53 alpha2_on7.923230.3848NoNoYesYes99
683x50 7x53 alpha2_on023.7138YesNoYesYes99
693x46 3x50 alpha2_on022.8063NoNoYesNo99
703x42 4x46 alpha2_on010.8846YesYesNoNo89
712x56 7x42 alpha2_on036.1483NoYesYesYes98
722x551 2x56 alpha2_on025.3344NoNoNoYes69
732x551 3x35 alpha2_on017.8561NoNoNoYes67
742x59 E1x52 alpha2_on5.5592319.0877NoNoNoNo77
75E1x51 E1x52 alpha2_on015.2926NoNoNoNo57
763x25 E1x50 alpha2_on1.9250111.0967NoNoYesYes99
77E1x50 E2x50 alpha2_on1.9642511.0967YesYesNoNo99
785x461 Lig alpha2_on020.2723NoNoYesYes80
795x43 5x461 alpha2_on018.8992NoNoNoNo88
805x39 5x43 alpha2_on1.0569217.3611YesYesNoNo78
815x47 6x48 alpha2_on013.9843YesYesYesYes88
825x47 6x49 alpha2_on6.228711.9041YesYesNoYes87
835x61 6x37 alpha2_on019.2645NoNoNoNo98
845x62 6x37 alpha2_on017.9386NoYesNoNo68
855x62 6x33 alpha2_on012.1339NoYesNoNo68
866x51 7x37 alpha2_on010.0654YesYesNoYes86
876x51 Lig alpha2_on0.4046212.7468YesYesYesYes80

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x32LigShared29.19.971110
3x33LigShared11.343.650010
3x36LigShared6.599.070010
E2x52Ligalpha2_off6.700010
6x51LigShared12.6411.931110
6x52LigShared7.583.981110
6x55LigShared8.1110.521010
7x38LigShared16.8514.911110
7x42LigShared5.685.741110
2x563x32Shared5.8470121
2x577x39alpha2_off5.8201022
2x577x42alpha2_off8.3801021
2x607x42Shared7.637.630021
3x327x42Shared5.758.051111
3x334x57alpha2_off4.8500012
3x366x48alpha2_off9.1400011
3x374x57alpha2_off6.400112
3x375x461Shared9.597.990111
5x39E2x52alpha2_off5.8602221
5x395x43Shared12.7213.992222
5x406x55Shared14.5113.30021
5x446x55Shared5.385.090121
5x476x52Shared22.5124.650121
6x446x48Shared10.317.020121
6x447x45alpha2_off11.300122
6x486x52Shared6.017.020111
6x487x41Shared11.264.220112
6x516x52alpha2_off12.8601111
6x516x55alpha2_off12.3801111
6x517x34Shared8.577.51112
6x517x38Shared7.58.571111
7x357x38alpha2_off4.9600021
7x387x39alpha2_off5.0101112
7x397x42Shared13.57.721021
3x406x44Shared3.893.770122
4x565x461alpha2_off3.100021
4x62E2x52alpha2_off2.9800021
2x567x42alpha2_on03.630121
3x29E2x52alpha2_on04.150421
3x374x56alpha2_on06.080112
3x37Ligalpha2_on03.610110
3x406x48alpha2_on08.220121
5x461Ligalpha2_on06.130110
5x476x44alpha2_on05.360122
5x476x48alpha2_on04.010121
6x487x45alpha2_on09.040112
6x48Ligalpha2_on04.650110
6x517x37alpha2_on03.221112
7x347x35alpha2_on04.680022
7x387x42alpha2_on014.441111
5x435x461alpha2_on01.630021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
alpha2_off alpha2c_off
alpha2_on alpha2b_on
Network Difference
Value alpha2_off alpha2_on
Imin 4.54 2.85
Number of Linked Nodes 240 229
Number of Specific Nodes 25 (10.42%) 14  (6.11%)
Number of Shared Nodes 215 (89.58%) 215  (93.89%)
Number of Links 263 249
Number of Specific Links 132 (50.19%) 118  (47.39%)
Number of Shared Links 131 (49.81%) 131  (52.61%)
Number of Hubs 29 26
Number of Specific Hubs 13 (44.83%) 10  (38.46%)
Number of Shared Hubs 16 (55.17%) 16  (61.54%)
Average % Shared Neighbours (Jaccard) 34.65
Average % Shared Neighbours (Otsuka) 43.51
Average % Shared Neighbours (Overlap Coefficient) 51.91
Average % Shared Cliques (k3-6) 78.45
Graphlets Similarity 0.543373
Paths Difference
Value alpha2_off alpha2_on
Number Of Nodes in MetaPath 50 54
Specific Nodes in MetaPath 20 (40.00%) 24  (44.44%)
Shared Nodes in MetaPath 215 (89.58%) 215  (89.58%)
Number Of Links MetaPath 50 55
Specific Links in MetaPath 32 (64.00%) 37  (67.27%)
Shared Links in MetaPath 131 (49.81%) 131  (49.81%)
Number of Shortest Paths 58334 34797
Length Of Smallest Path 3 3
Average Path Length 17.8976 12.2268
Length of Longest Path 35 28
Minimum Path Strength 1.47 1.32
Average Path Strength 7.94591 6.41978
Maximum Path Strength 22.975 17.91
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.917489 0.919508
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.84615 4.34783
Average % Of Corr. Nodes 34.3849 48.5734
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 41.7748 46.0369
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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