Orange: nodes, hubs and links specific of alpha2a_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alpha2a_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner alpha2a_off Avg Int. Strength alpha2a_on Avg Int. Strength alpha2a_off Num Of Links alpha2a_on Num Of Links ConSurf
1I1x51 alpha2a_off5.33751.75417427
22x42 alpha2a_off6.284.71167438
32x65 alpha2a_off2.291.3427
4E1x49 alpha2a_off7.79755.74333415
5E1x51 alpha2a_off14.82832.37167625
63x28 alpha2a_off6.723333.36111637
73x42 alpha2a_off8.98754.82556438
83x43 alpha2a_off4.74254.77444438
93x50 alpha2a_off7.17254.105429
104x50 alpha2a_off8.2564.97529
11E2.I187 alpha2a_off3.710406
125x39 alpha2a_off5.154.68438
135x54 alpha2a_off4.74255.39419
146x31 alpha2a_off8.3852.93833417
156x33 alpha2a_off6.46253.72167438
161x46 Shared4.7552.54292448
171x50 Shared7.0445.12625549
182x45 Shared5.963.66833449
19E1x50 Shared2.084.04917468
203x37 Shared5.95752.77292448
214x53 Shared3.73752.85375448
225x47 Shared11.6357.27067459
235x48 Shared5.1753.236457
246x48 Shared9.0346.57139569
256x51 Shared11.7056.50133458
266x52 Shared9.628336.33083668
277x37 Shared6.60755.50833447
287x42 Shared5.735.43389468
297x53 Shared6.94.16278469
308x50 Shared6.9646.73633558
318x54 Shared5.6124.66333558
32Lig Shared10.457.629589120
33I1x50 alpha2a_on2.8554.52267259
343x35 alpha2a_on8.273334.92667357
353x45 alpha2a_on1.72.90667148
36I2x56 alpha2a_on17.332.57125146
37I2x57 alpha2a_on8.936674.405367
384x40 alpha2a_on1.293.18333145
39E2x50 alpha2a_on10.943.69417349
405x57 alpha2a_on5.5752.6825248
415x58 alpha2a_on7.014.024359
426x26 alpha2a_on01.02208045
436x44 alpha2a_on6.643334.39125349
446x55 alpha2a_on8.964.664358
457x49 alpha2a_on5.536673.83083349
   
Orange: nodes, hubs and links specific of alpha2a_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of alpha2a_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner alpha2a_off Recurrence alpha2a_on Recurrence alpha2a_off Hub1? alpha2a_on Hub1? alpha2a_off Hub2? alpha2a_on Hub2? ConSurf1 ConSurf2
11x35 NT.L30 alpha2a_off11.16140NoNoNoNo68
22x65 NT.L30 alpha2a_off14.59170YesNoNoNo78
32x61 2x65 alpha2a_off14.59760NoNoYesNo87
42x65 2x66 alpha2a_off36.23795.3024YesNoNoNo77
52x66 E1x50 alpha2a_off43.73380NoNoYesYes78
6E1x50 E1x52 alpha2a_off58.58443.23332YesYesNoNo87
73x24 E1x52 alpha2a_off62.26761.14949NoNoNoNo67
82x59 3x24 alpha2a_off32.3370NoNoNoNo76
92x57 7x42 alpha2a_off11.07910NoNoYesYes88
103x24 E1x51 alpha2a_off33.66090NoNoYesNo65
113x28 E1x51 alpha2a_off43.04540YesNoYesNo75
123x28 Lig alpha2a_off88.28550YesNoYesYes70
133x32 Lig alpha2a_off93.84561.79203NoNoYesYes80
142x56 3x32 alpha2a_off1000.898962NoNoNoNo88
152x53 2x56 alpha2a_off99.97060NoNoNoNo88
162x53 7x46 alpha2a_off99.75887.80476NoNoNoNo89
171x46 7x46 alpha2a_off53.66560YesYesNoNo89
181x46 1x50 alpha2a_off49.00560YesYesYesYes89
192x50 7x46 alpha2a_off46.12856.70538NoNoNoNo99
201x50 2x50 alpha2a_off45.5465.60599YesYesNoNo99
211x50 7x50 alpha2a_off85.96145.60599YesYesNoNo99
227x49 7x50 alpha2a_off82.77240NoYesNoNo99
237x53 8x50 alpha2a_off53.02420YesYesYesYes98
248x50 8x54 alpha2a_off30.02470YesYesYesYes88
251x52 8x54 alpha2a_off16.60397.84897NoNoYesYes88
268x50 I1x51 alpha2a_off19.43990YesYesYesNo87
271x60 I1x51 alpha2a_off10.25540NoNoYesNo87
282x43 7x53 alpha2a_off23.65850NoNoYesYes89
296x51 Lig alpha2a_off40.28597.91971YesYesYesYes80
306x48 6x51 alpha2a_off41.68630YesYesYesYes98
316x44 6x48 alpha2a_off84.97290NoYesYesYes99
323x43 5x54 alpha2a_off72.45230YesNoYesNo89
333x47 5x54 alpha2a_off69.61050NoNoYesNo99
345x57 5x61 alpha2a_off67.33940NoYesNoNo89
355x58 5x61 alpha2a_off66.46860NoYesNoNo99
363x50 6x37 alpha2a_off53.46550YesNoNoNo98
373x49 3x50 alpha2a_off58.90210NoNoYesNo99
382x39 3x49 alpha2a_off25.81780NoNoNoNo99
392x39 I2x57 alpha2a_off23.82333.84933NoNoNoYes97
406x52 Lig alpha2a_off72.22887.65739YesYesYesYes80
416x48 6x52 alpha2a_off49.29988.66836YesYesYesYes98
422x38 4x39 alpha2a_off12.05580NoNoNoNo76
432x43 6x33 alpha2a_off20.43420NoNoYesNo88
446x33 6x37 alpha2a_off10.00820YesNoNoNo88
453x33 Lig alpha2a_off66.89224.39755NoNoYesYes80
463x33 4x57 alpha2a_off65.35663.43669NoNoNoNo88
473x34 4x57 alpha2a_off36.66162.29604NoNoNoNo78
483x34 4x50 alpha2a_off32.97830NoNoYesNo79
492x45 4x50 alpha2a_off22.57590YesYesYesNo99
502x45 4x46 alpha2a_off19.65171.36171YesYesNoNo98
512x42 4x46 alpha2a_off10.94380YesNoNoNo88
523x28 3x29 alpha2a_off10.1730YesNoNoNo77
53E2x52 Lig alpha2a_off18.18070NoNoYesYes70
543x37 4x57 alpha2a_off28.32430YesYesNoNo88
553x37 4x53 alpha2a_off25.75318.72436YesYesYesYes88
563x41 4x53 alpha2a_off18.0691.36171NoNoYesYes78
573x49 I2x53 alpha2a_off32.73711.2556NoNoNoNo99
583x50 6x34 alpha2a_off14.0680YesNoNoNo98
593x51 3x52 alpha2a_off19.15160NoNoNoNo86
605x43 Lig alpha2a_off18.38679.92101NoNoYesYes90
615x39 5x43 alpha2a_off16.60989.05152YesNoNoNo89
626x31 6x34 alpha2a_off11.97930YesNoNoNo78
636x40 7x49 alpha2a_off20.04590NoNoNoYes89
646x40 7x52 alpha2a_off17.57470NoNoNoNo88
657x52 7x56 alpha2a_off10.11410NoNoNoNo88
666x49 6x50 alpha2a_off16.99220NoNoNoNo79
676x50 7x37 alpha2a_off15.15062.71457NoNoYesYes97
683x50 6x33 alpha2a_off19.44580YesNoYesNo98
693x29 E2.I187 alpha2a_off14.08570NoNoYesNo76
702x59 3x28 Shared33.949227.5495NoNoYesNo77
717x49 7x53 Shared68.592689.2007NoYesYesYes99
723x43 6x44 Shared80.348324.6552YesNoNoYes89
733x47 5x57 Shared68.42298.373NoNoNoYes98
745x58 6x37 Shared64.485823.5322NoYesNoNo98
752x38 I2x57 Shared16.798136.5598NoNoNoYes77
762x53 3x35 Shared10.437716.591NoNoNoYes87
773x52 I2x53 Shared23.823345.7528NoNoNoNo69
785x47 6x52 Shared32.525313.8853YesYesYesYes98
795x47 6x49 Shared29.55412.6415YesYesNoNo97
806x49 6x53 Shared11.432110.3955NoNoNoNo77
817x35 7x39 alpha2a_on010.6284NoNoNoNo77
827x39 7x42 alpha2a_on011.7514NoNoYesYes78
832x60 7x42 alpha2a_on3.3831514.5868NoNoYesYes88
841x46 2x60 alpha2a_on013.6819YesYesNoNo88
857x42 Lig alpha2a_on8.031326.6476YesYesYesYes80
863x35 Lig alpha2a_on045.7469NoYesYesYes70
876x48 Lig alpha2a_on077.4847YesYesYesYes90
886x48 7x45 alpha2a_on087.8507YesYesNoNo99
897x45 7x49 alpha2a_on088.8499NoNoNoYes99
906x40 7x53 alpha2a_on058.1555NoNoYesYes89
915x58 6x40 alpha2a_on058.0288NoYesNoNo98
923x47 5x58 alpha2a_on0100NoNoNoYes99
933x51 5x57 alpha2a_on089.9434NoNoNoYes88
943x51 3x55 alpha2a_on7.2664286.4537NoNoNoNo87
953x55 I2x56 alpha2a_on084.6381NoNoNoYes76
964x40 I2x56 alpha2a_on082.0591NoYesNoYes56
973x52 4x40 alpha2a_on048.0105NoNoNoYes65
98I2x53 I2x57 alpha2a_on043.3477NoNoNoYes97
992x38 8x50 alpha2a_on025.5512NoNoYesYes78
1007x54 8x50 alpha2a_on016.5704NoNoYesYes98
1017x54 8x54 alpha2a_on8.3960915.2676NoNoYesYes98
1023x50 7x53 alpha2a_on058.1732YesNoYesYes99
1033x50 5x58 alpha2a_on058.0877YesNoNoYes99
1042x38 I1x50 alpha2a_on010.0212NoNoNoYes79
1052x42 4x40 alpha2a_on037.3497YesNoNoYes85
1062x42 4x45 alpha2a_on2.2475932.7606YesNoNoNo87
1072x45 4x45 alpha2a_on031.5315YesYesNoNo97
1082x45 3x42 alpha2a_on1.3532627.8443YesYesYesNo98
1092x59 3x35 alpha2a_on028.3718NoNoNoYes77
1103x28 E2x50 alpha2a_on3.4184519.7418YesNoNoYes79
111E1x50 E2x50 alpha2a_on015.8866YesYesNoYes89
1123x42 4x50 alpha2a_on5.7837125.3566YesNoYesNo89
1133x38 4x50 alpha2a_on3.4066824.104NoNoYesNo89
1143x38 4x53 alpha2a_on4.9776420.4315NoNoYesYes88
1155x47 6x44 alpha2a_on023.2433YesYesNoYes99
1165x62 6x37 alpha2a_on022.4181NoNoNoNo88
1175x62 5x66 alpha2a_on0.0058837420.1309NoNoNoNo88
1185x66 6x30 alpha2a_on018.8428NoNoNoNo89
1196x30 6x33 alpha2a_on010.2305NoNoYesNo98
1207x52 7x53 alpha2a_on010.4899NoNoYesYes89
1216x51 7x34 alpha2a_on018.3919YesYesNoNo86
1226x54 7x34 alpha2a_on5.7601816.2079NoNoNoNo76
1236x54 7x37 alpha2a_on7.6606313.5228NoNoYesYes77
1243x43 7x53 alpha2a_on024.7672YesNoYesYes89
1256x51 6x52 alpha2a_on0.76488612.951YesYesYesYes88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x523x35Shared10.967.916670021
2x532x56alpha2a_off8.0200022
2x533x35Shared6.554.806670021
2x563x32Shared5.845.111670121
2x593x28Shared7.224.813330021
2x603x28alpha2a_off7.6300021
2x607x42Shared6.363.966670021
3x28E1x51alpha2a_off8.9401012
E1x51E2x50alpha2a_off20.1601022
3x283x29alpha2a_off4.6901012
3x28E2x50Shared5.382.8751012
3x28Ligalpha2a_off6.4801010
3x29E2x52alpha2a_off8.5600021
3x313x35Shared7.314.060021
3x327x42Shared4.64.216671111
3x32LigShared26.789.286671110
3x334x57Shared6.464.038330012
3x33LigShared8.239.718330010
3x366x48Shared10.453.046670111
6x55E2x52Shared4.843.626670111
E2x52Ligalpha2a_off10.1400010
6x55E2.D207alpha2a_off6.900112
5x395x43Shared6.364.663330321
5x406x55Shared15.143.9950021
5x446x52Shared4.193.0250021
5x475x48Shared7.55.361122
5x476x52Shared23.5816.77671121
5x486x52Shared4.294.108331121
6x446x48alpha2a_off9.0200121
6x447x45alpha2a_off6.0400122
6x486x51alpha2a_off7.0201111
6x486x52Shared6.017.351111
6x487x41Shared12.677.973331112
6x516x52Shared13.933.3951111
6x517x38Shared8.575.893331111
6x51LigShared17.310.5051110
6x52LigShared5.773.331110
7x357x38alpha2a_off4.9601021
7x38LigShared8.6516.111110
7x42LigShared8.339.283331110
2x577x42alpha2a_off3.6300021
2x463x39alpha2a_off300021
5x43LigShared2.374.676670010
2x567x42alpha2a_on03.1550121
3x36Ligalpha2a_on011.53830110
3x406x48alpha2a_on07.436670021
6x487x45alpha2a_on09.6051112
6x48Ligalpha2a_on04.016671110
6x516x55alpha2a_on08.4251111
6x55Ligalpha2a_on05.591670110
7x357x39alpha2a_on03.673331022
7x387x42alpha2a_on08.766671111
7x397x42alpha2a_on03.2150021
5x476x44alpha2a_on03.751671122
6x517x34alpha2a_on04.288331112
3x35Ligalpha2a_on05.173330010
2x593x35alpha2a_on02.676670021
3x213x28alpha2a_on02.3950021
3x39Ligalpha2a_on02.3250010
E2.D207E2x51alpha2a_on01.948330022
5x416x55alpha2a_on01.681670021
E2x51E2x52alpha2a_on01.593330021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
alpha2a_off 6KUX-α2a-RS-79948
alpha2a_on 7EJ0-α2a-L-Norepinephrine-Go/&β;1/&γ;2
7EJK-α2a-Oxymetazoline-Go/&β;1/&γ;2
7W7E-α2a-W58-Go/&β;1/&γ;2
7W6P-α2a-W96-Go/&β;1/&γ;2
7EJ8-α2a-Brimonidine-Go/&β;1/&γ;2
7EJA-α2a-Dexmedetomidine-Go/&β;1/&γ;2
Network Difference
Value alpha2a_off alpha2a_on
Imin 4.18 2.84
Number of Linked Nodes 248 267
Number of Specific Nodes 9 (3.63%) 28  (10.49%)
Number of Shared Nodes 239 (96.37%) 239  (89.51%)
Number of Links 268 283
Number of Specific Links 142 (52.99%) 157  (55.48%)
Number of Shared Links 126 (47.01%) 126  (44.52%)
Number of Hubs 32 30
Number of Specific Hubs 15 (46.88%) 13  (43.33%)
Number of Shared Hubs 17 (53.13%) 17  (56.67%)
Average % Shared Neighbours (Jaccard) 32.05
Average % Shared Neighbours (Otsuka) 40.16
Average % Shared Neighbours (Overlap Coefficient) 47.01
Average % Shared Cliques (k3-6) 79.00
Graphlets Similarity 0.523576
Paths Difference
Value alpha2a_off alpha2a_on
Number Of Nodes in MetaPath 77 56
Specific Nodes in MetaPath 39 (50.65%) 18  (32.14%)
Shared Nodes in MetaPath 239 (96.37%) 239  (96.37%)
Number Of Links MetaPath 80 56
Specific Links in MetaPath 69 (86.25%) 45  (80.36%)
Shared Links in MetaPath 126 (47.01%) 126  (47.01%)
Number of Shortest Paths 48788 58036
Length Of Smallest Path 3 3
Average Path Length 14.4488 17.0198
Length of Longest Path 31 36
Minimum Path Strength 1.29 0.557222
Average Path Strength 7.2384 4.48414
Maximum Path Strength 22.73 13.8242
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.921891 0.91097
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.16667 3.125
Average % Of Corr. Nodes 45.4479 33.858
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 37.4652 41.9016
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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