Orange: nodes, hubs and links specific of bb2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of bb2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner bb2_off Avg Int. Strength bb2_on Avg Int. Strength bb2_off Num Of Links bb2_on Num Of Links ConSurf
11x43 bb2_off5.4623.21537
21x50 bb2_off6.74255.81429
31x60 bb2_off3.8154.82333436
42x38 bb2_off4.4923.20333537
53x39 bb2_off8.224.445429
63x41 bb2_off5.134.88333435
73x42 bb2_off5.1554.675428
84x50 bb2_off7.638.48833439
9E2.L181 bb2_off4.91753.17414
105x39 bb2_off5.396.42436
115x47 bb2_off7.2266.51667538
126x51 bb2_off4.62257.55833435
137x46 bb2_off5.9757.44438
148x50 bb2_off7.983.56667439
15Lig Shared10.68699.9481213320
161x39 Shared10.15756.032457
172x42 Shared5.171674.185657
182x50 Shared8.03757.425459
192x64 Shared6.0256.70917464
20E1x50 Shared5.951438.60917768
213x30 Shared4.514.28375446
223x50 Shared6.84754.4125449
233x51 Shared8.598.1975448
244x61 Shared8.87255.369455
25E2.E186 Shared7.81256.5225463
26E2.Y199 Shared8.662511.132455
275x58 Shared7.7947.187558
286x48 Shared7.6347.5825548
296x55 Shared11.345.163455
30E3.Y291 Shared9.55759.955451
317x42 Shared7.374.0675447
327x45 Shared6.77.235449
337x54 Shared7.18757.0425447
348x54 Shared8.90258.04875447
352x46 bb2_on5.765.441259
362x53 bb2_on5.2553.94875247
372x56 bb2_on4.585.513157
382x59 bb2_on2.924.27125146
392x60 bb2_on7.785.598256
40E1x52 bb2_on7.773337.34375347
413x28 bb2_on4.344.6245
423x29 bb2_on7.533337.00625345
433x32 bb2_on6.365.91346
443x37 bb2_on4.8653.54125246
45E2.H182 bb2_on2.813334.212351
46E2.F184 bb2_on2.4857.47417262
47E2.F193 bb2_on9.7555.60875241
485x35 bb2_on2.267.75625141
495x44 bb2_on7.196676.04625346
505x461 bb2_on4.393335.146356
515x60 bb2_on5.343333.29625343
525x61 bb2_on6.193.224358
535x70 bb2_on04.57125040
546x23 bb2_on03.805040
556x52 bb2_on6.956.09375347
567x30 bb2_on6.633334.999354
577x31 bb2_on10.056.25154
587x38 bb2_on10.156.8575165
597x49 bb2_on5.726677.474359
   
Orange: nodes, hubs and links specific of bb2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of bb2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner bb2_off Recurrence bb2_on Recurrence bb2_off Hub1? bb2_on Hub1? bb2_off Hub2? bb2_on Hub2? ConSurf1 ConSurf2
13x32 Lig bb2_off10.80415.95836NoYesYesYes60
2E2.Y199 Lig bb2_off22.44250YesYesYesYes50
35x36 Lig bb2_off11.18280NoNoYesYes30
41x39 1x43 bb2_off28.53680YesYesYesNo77
51x43 2x54 bb2_off45.3050YesNoNoNo76
63x39 7x46 bb2_off40.34080YesNoYesNo98
73x39 6x44 bb2_off1000YesNoNoNo99
81x43 7x42 bb2_off12.59690YesNoYesYes77
91x42 7x42 bb2_off11.25970NoNoYesYes77
101x50 2x50 bb2_off21.02836.52714YesNoYesYes99
112x50 3x39 bb2_off35.80262.52913YesYesYesNo99
121x50 2x47 bb2_off11.54370YesNoNoNo99
137x53 8x50 bb2_off32.36490NoNoYesNo99
146x40 7x53 bb2_off34.60150NoNoNoNo79
156x40 7x49 bb2_off45.42330NoNoNoYes79
162x50 7x49 bb2_off27.51326.89712YesYesNoYes99
173x39 7x45 bb2_off27.5250YesNoYesYes99
181x54 2x47 bb2_off10.14141.8223NoNoNoNo79
191x60 I1x50 bb2_off11.79815.26258YesNoNoNo67
202x40 I1x50 bb2_off13.27147.05726NoNoNoNo87
212x39 3x49 bb2_off17.20610NoNoNoNo88
222x38 2x42 bb2_off28.82670YesNoYesYes77
232x42 3x42 bb2_off72.27380YesYesYesNo78
243x42 4x49 bb2_off78.85330YesNoNoNo87
253x41 4x49 bb2_off79.62251.64559YesNoNoNo57
263x40 3x41 bb2_off86.66354.91468NoNoYesNo85
273x40 6x44 bb2_off88.54510NoNoNoNo89
283x49 3x50 bb2_off10.16510NoNoYesYes89
293x46 6x37 bb2_off39.1870NoNoNoNo98
303x50 6x37 bb2_off12.11170YesYesNoNo98
311x39 2x57 bb2_off26.44220YesYesNoNo77
322x57 2x58 bb2_off25.21741.77812NoNoNoNo79
332x58 E1x52 bb2_off23.9690NoNoNoYes97
34E1x50 E1x52 bb2_off21.60826.69833YesYesNoYes87
35E1x50 E2.L181 bb2_off12.56140YesYesYesNo84
363x33 4x61 bb2_off13.89270NoNoYesYes45
373x33 4x57 bb2_off12.38390NoNoNoNo47
383x30 4x57 bb2_off10.85739.50908YesYesNoNo67
393x41 5x461 bb2_off10.76270YesNoNoYes56
405x58 6x37 bb2_off35.44761.55724YesYesNoNo88
413x50 3x53 bb2_off11.05850YesYesNoNo98
426x58 E2.Y199 bb2_off11.68570NoNoYesYes45
43E2.Y199 E3.Y291 bb2_off10.48461.46336YesYesYesYes51
44E3.S292 E3.Y291 bb2_off14.66780NoNoYesYes11
456x54 6x58 bb2_off10.37220.110442NoNoNoNo54
464x61 Lig bb2_off14.75652.92672YesYesYesYes50
476x48 Lig Shared81.7407100YesYesYesYes80
486x52 Lig Shared19.353912.3916NoYesYesYes70
496x55 Lig Shared11.904613.4464YesYesYesYes50
502x54 7x46 Shared46.316814.5673NoNoYesNo68
516x44 6x48 Shared86.036371.6826NoNoYesYes98
528x50 8x54 Shared18.927916.4946YesNoYesYes97
537x45 7x49 Shared21.211838.202YesYesNoYes99
542x37 2x40 Shared14.898514.1256NoNoNoNo88
552x37 2x39 Shared16.513815.865NoNoNoNo88
562x38 3x49 Shared24.341820.8405YesNoNoNo78
572x42 3x46 Shared40.234334.1101YesYesNoNo79
585x58 5x61 Shared25.945258.5676YesYesNoYes88
593x51 5x61 Shared17.176553.5424YesYesNoYes88
605x47 6x52 Shared10.514213.2917YesNoNoYes87
617x54 8x54 Shared11.916521.7958YesYesYesYes77
621x39 7x39 bb2_on018.9243YesYesNoNo75
632x57 7x42 bb2_on012.2481NoNoYesYes77
642x53 Lig bb2_on019.4158NoYesYesYes70
652x53 7x46 bb2_on2.8814920.0066NoYesYesNo78
661x46 2x54 bb2_on012.2204NoNoNoNo86
671x45 1x46 bb2_on2.8814914.9705NoNoNoNo68
681x45 7x51 bb2_on1.443710.0226NoNoNoNo65
692x50 7x46 bb2_on8.9343816.7707YesYesYesNo98
706x48 7x45 bb2_on037.1473YesYesYesYes89
717x49 7x50 bb2_on037.4068NoYesNoNo99
725x51 6x44 bb2_on079.8774NoNoNoNo69
735x51 5x55 bb2_on078.5631NoNoNoNo65
745x55 6x41 bb2_on077.9115NoNoNoNo57
755x58 6x41 bb2_on074.1178YesYesNoNo87
763x50 5x58 bb2_on042.5921YesYesYesYes98
773x50 6x40 bb2_on038.5554YesYesNoNo97
786x36 6x40 bb2_on9.3189835.2642NoNoNoNo87
796x36 7x56 bb2_on6.934533.591NoNoNoNo87
806x32 7x56 bb2_on032.089NoNoNoNo87
816x32 7x55 bb2_on030.4048NoNoNoNo86
827x54 7x55 bb2_on2.4022228.7095YesYesNoNo76
831x53 7x50 bb2_on042.2111NoNoNoNo99
841x53 2x43 bb2_on2.3903939.9083NoNoNoNo98
851x56 8x50 bb2_on011.0939NoNoYesNo79
862x43 3x46 bb2_on039.1352NoNoNoNo89
872x42 3x49 bb2_on022.5468YesYesNoNo78
882x38 2x39 bb2_on017.5935YesNoNoNo78
893x36 Lig bb2_on046.9987NoNoYesYes70
903x36 3x37 bb2_on038.4726NoNoNoYes76
913x37 4x53 bb2_on1.5679530.9183NoYesNoNo68
923x38 4x53 bb2_on029.4771NoNoNoNo78
933x38 4x50 bb2_on1.5679526.5614NoNoYesNo79
94E1x50 Lig bb2_on012.5076YesYesYesYes80
95E2.F184 Lig bb2_on019.5869NoYesYesYes20
96E2.F184 E3.Y291 bb2_on017.61NoYesYesYes21
97E2.H182 E3.Y291 bb2_on015.3957NoYesYesYes11
983x34 4x50 bb2_on023.6015NoNoYesNo59
993x34 4x54 bb2_on011.0553NoNoNoNo54
1003x34 4x57 bb2_on011.0553NoNoNoNo57
1013x30 4x59 bb2_on6.2067312.7174YesYesNoNo64
1023x51 3x55 bb2_on4.822243.4535YesYesNoNo87
1033x55 5x64 bb2_on3.2246637.4289NoNoNoNo75
104E2x52 Lig bb2_on2.6507313.3359NoNoYesYes40
105E2.Y199 E2x52 bb2_on0.18342112.5021YesYesNoNo54
1065x35 E2.Y199 bb2_on010.0668NoYesYesYes15
1075x47 6x49 bb2_on4.680211.8229YesNoNoNo86
1085x64 5x67 bb2_on035.8993NoNoNoNo54
1095x67 5x70 bb2_on034.3586NoNoNoYes40
1105x70 6x31 bb2_on025.0483NoYesNoNo05
1116x27 6x31 bb2_on023.6181NoNoNoNo45
1126x23 6x27 bb2_on022.1658NoYesNoNo04
1137x45 7x48 bb2_on014.352YesYesNoNo96
1147x30 Lig bb2_on010.4534NoYesYesYes40
1151x38 7x39 bb2_on014.2084NoNoNoNo65
1167x38 Lig bb2_on1.514714.3023NoYesYesYes50
1177x42 Lig bb2_on019.3219YesYesYesYes70
1183x46 3x50 bb2_on020.9288NoNoYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x29LigShared10.9715.2551110
3x32LigShared10.384.540110
4x61LigShared16.234.9251110
E2x52LigShared15.5417.9451110
E2.Y199Ligbb2_off13.0601110
5x36Ligbb2_off8.2300110
5x39Ligbb2_off7.1601110
6x48LigShared8.244.031110
6x51LigShared4.598.1651110
6x52LigShared6.445.091110
6x55LigShared26.115.651110
7x38LigShared10.1511.690110
1x352x64Shared9.673.0250021
1x362x64bb2_off9.7400021
1x391x43bb2_off10.8803122
1x392x60Shared12.645.1753121
1x397x42Shared14.444.133121
1x427x42bb2_off6.2800021
1x437x42bb2_off7.5403021
2x533x35Shared6.0130112
2x537x46Shared4.54.50112
2x5513x28bb2_off4.5600022
2x563x32Shared4.5810.680111
2x63E1x50Shared650111
E1.D104E2.E186bb2_off10.3900111
E1x49E2.F193bb2_off4.2800021
E1x50E1x52Shared15.0315.032112
3x25E1x50Shared3.925.222121
E1x50E2.L181bb2_off4.5602112
E1x50E2x50Shared6.5317.632111
3x25E2.L181Shared4.763.172122
3x25E2x50Shared7.287.282121
3x283x32Shared4.124.120121
3x294x61Shared6.293.1451111
3x294x65Shared5.346.2351111
3x334x57bb2_off4.7300112
3x334x61bb2_off9.2800111
3x366x48bb2_off4.900111
4x615x39Shared3.697.391111
4x65E2x52bb2_off5.3400111
E2.E186E2.S188Shared10.064.310112
E2.E186E2.T189Shared8.4711.9950112
E2.Q191E2.T189Shared5.673.5450112
E2.F193E2.Q191bb2_off15.2300111
E2.Y199E2x52Shared5.5613.911111
6x58E2.Y199bb2_off4.1200121
E2.Y199E3.Y291Shared11.9115.8851112
5x36E3.Y291bb2_off6.9500112
5x395x43Shared4.186.971112
5x396x55Shared6.534.91111
5x406x59Shared6.526.520122
5x436x55Shared7.633.181121
5x445x47Shared8.258.251122
5x446x52Shared6.799.6151121
5x476x52Shared7.625.441121
6x446x48Shared14.0313.030121
6x486x51bb2_off4.5201111
6x487x41bb2_off6.4801112
6x517x37bb2_off4.6901112
6x517x41Shared4.695.471112
6x547x33Shared4.563.040122
6x556x59Shared5.096.9951112
7x30E3.D295Shared8.823.150112
7x307x33bb2_off4.1100112
7x307x34Shared6.976.970112
7x317x35Shared10.057.540112
1x322x64bb2_off3.5200021
2x592x60bb2_off2.9200121
3x21E1x50Shared2.812.810021
3x24E1x50bb2_off2.8100021
1x392x57bb2_off2.6703122
E2.F184E2.S195Shared2.644.620111
6x546x58Shared2.516.260122
E2.E186E2.F184bb2_off2.3300111
E2.P200Ligbb2_off1.8300010
5x32E2.P200bb2_off1.6300021
E3.T296E3.V294bb2_off1.5900111
5x32E2.S202bb2_off1.4900022
1x311x32bb2_off1.4300022
7x397x42bb2_off1.2200021
2x642x65bb2_off1.1700112
1x351x36bb2_on03.390022
1x351x39bb2_on06.0450022
1x397x38bb2_on03.093121
1x397x39bb2_on011.723122
1x432x57bb2_on03.253022
2x532x56bb2_on04.760111
2x567x42bb2_on04.890111
2x56Ligbb2_on05.5450110
2x577x42bb2_on04.160021
2x59E1x52bb2_on06.5550122
2x593x28bb2_on04.610122
2x593x32bb2_on04.30121
2x602x63bb2_on04.170111
2x602x64bb2_on09.1950111
2x607x38bb2_on04.760111
2x60Ligbb2_on04.690110
2x63Ligbb2_on015.2950110
2x647x31bb2_on05.6750111
2x647x34bb2_on03.180112
2x647x35bb2_on04.230112
2x64Ligbb2_on014.950110
E1.D104E1x49bb2_on03.570112
E1.D104E2.F193bb2_on04.180111
E1.D104Ligbb2_on04.7050110
E1x50Ligbb2_on05.9652110
3x28E1x52bb2_on06.280122
3x283x29bb2_on03.390121
3x335x461bb2_on08.530112
3x33Ligbb2_on05.040110
3x363x37bb2_on03.680112
3x365x461bb2_on04.5850112
3x36Ligbb2_on05.510110
3x375x461bb2_on03.7650122
4x614x65bb2_on04.311111
4x61E2x52bb2_on07.0751111
4x65Ligbb2_on04.880110
E2.H182E2.P200bb2_on06.10021
E2.H182E3.Y291bb2_on03.270022
E2.F184E2.H201bb2_on09.6150112
E2.F184E3.Y291bb2_on07.7350112
E2.F184E3.V294bb2_on03.930111
E2.F184Ligbb2_on015.730110
E2.E186E3.T296bb2_on05.6450111
E2.E186Ligbb2_on011.8850110
E2.F193Ligbb2_on010.3750110
E2.S195Ligbb2_on012.7250110
E2x50Ligbb2_on04.452110
5x35E2.Y199bb2_on07.620121
5x36E2.Y199bb2_on012.520111
6x59E2.Y199bb2_on05.7250121
E2.P200E2.S202bb2_on03.560012
E2.H201E3.Y291bb2_on022.3250122
5x325x35bb2_on06.380022
5x355x36bb2_on04.580121
5x406x55bb2_on05.090121
6x447x45bb2_on06.040122
6x486x52bb2_on04.231111
6x487x45bb2_on09.041112
6x517x38bb2_on09.041111
6x547x38bb2_on05.6350121
6x57E3.D295bb2_on05.1750122
6x577x30bb2_on03.270121
6x587x30bb2_on07.90121
6x587x38bb2_on06.930121
E3.V294Ligbb2_on08.510110
E3.T296Ligbb2_on05.620110
7x30Ligbb2_on03.7050110
7x31Ligbb2_on015.5350110
7x42Ligbb2_on03.093110
1x362x65bb2_on04.1050022
2x53Ligbb2_on03.5350110
E2.F184E2.F193bb2_on03.2150111
E2.E186E2.F193bb2_on04.6650111
E2.Q191Ligbb2_on04.090110
1x322x65bb2_on02.0750022
2x5512x56bb2_on01.690021
3x24E1x52bb2_on01.510022
1x317x31bb2_on01.260021
7x287x31bb2_on01.240021
E2.E186E2.E187bb2_on00.6350112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
bb2_off 7W41-BB2-PD176252
bb2_on 7W40-BB2-Bombesin-chim(NtGi1L-Gq)/β1/γ2
7W3Z-BB2-Gastrin Releasing Peptide-chim(NtGi1L-Gq)/β1/γ2
Network Difference
Value bb2_off bb2_on
Imin 3.63 2.98
Number of Linked Nodes 267 288
Number of Specific Nodes 8 (3.00%) 29  (10.07%)
Number of Shared Nodes 259 (97.00%) 259  (89.93%)
Number of Links 276 342
Number of Specific Links 115 (41.67%) 181  (52.92%)
Number of Shared Links 161 (58.33%) 161  (47.08%)
Number of Hubs 34 45
Number of Specific Hubs 14 (41.18%) 25  (55.56%)
Number of Shared Hubs 20 (58.82%) 20  (44.44%)
Average % Shared Neighbours (Jaccard) 39.30
Average % Shared Neighbours (Otsuka) 48.22
Average % Shared Neighbours (Overlap Coefficient) 57.31
Average % Shared Cliques (k3-6) 51.89
Graphlets Similarity 0.562597
Paths Difference
Value bb2_off bb2_on
Number Of Nodes in MetaPath 60 74
Specific Nodes in MetaPath 26 (43.33%) 40  (54.05%)
Shared Nodes in MetaPath 259 (97.00%) 259  (97.00%)
Number Of Links MetaPath 61 72
Specific Links in MetaPath 46 (75.41%) 57  (79.17%)
Shared Links in MetaPath 161 (58.33%) 161  (58.33%)
Number of Shortest Paths 33094 47778
Length Of Smallest Path 3 3
Average Path Length 13.0469 11.9749
Length of Longest Path 31 31
Minimum Path Strength 1.405 1.0725
Average Path Strength 6.87295 5.69302
Maximum Path Strength 21.17 19.105
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.926774 0.934282
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.7619 4.16667
Average % Of Corr. Nodes 54.514 60.8306
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 42.5968 41.5971
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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