Orange: nodes, hubs and links specific of cb1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cb1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner cb1_off Avg Int. Strength cb1_on Avg Int. Strength cb1_off Num Of Links cb1_on Num Of Links ConSurf
1NT.N101 cb1_off500406
2NT.F102 cb1_off1000505
3NT.M103 cb1_off1000504
4NT.F108 cb1_off5050525
5NT.L111 cb1_off500424
61x28 cb1_off00536
71x49 cb1_off00528
81x56 cb1_off00438
92x37 cb1_off00435
102x42 cb1_off500438
113x25 cb1_off10050439
123x28 cb1_off500526
133x49 cb1_off50100439
143x50 cb1_off1000639
153x56 cb1_off00425
16I2x57 cb1_off5050426
17E2.E258 cb1_off1000431
18E2.I267 cb1_off10050434
195x36 cb1_off050435
206x31 cb1_off00415
216x58 cb1_off500424
226x59 cb1_off00424
237x30 cb1_off00413
247x45 cb1_off1000539
257x47 cb1_off00537
26Lig Shared10010012150
271x39 Shared050447
281x46 Shared050447
292x40 Shared100100569
302x46 Shared050449
312x57 Shared100100647
322x61 Shared50100565
333x36 Shared100100647
34I2x53 Shared10050647
354x50 Shared1000649
36E2.W255 Shared10050445
37E2.F268 Shared10050445
38E2.H270 Shared1000543
395x43 Shared100100666
405x58 Shared50100669
415x64 Shared00445
426x48 Shared10050458
436x51 Shared500447
447x34 Shared100100464
457x49 Shared5050449
467x53 Shared50100469
471x60 cb1_on00246
482x50 cb1_on0100359
492x64 cb1_on0100364
502x65 cb1_on050254
513x22 cb1_on0100363
523x33 cb1_on00246
53E2.N256 cb1_on00356
54E2.I271 cb1_on050363
555x39 cb1_on50100367
565x60 cb1_on50100354
576x37 cb1_on00358
586x52 cb1_on00247
596x55 cb1_on5050346
60E3.K370 cb1_on00141
617x52 cb1_on0100249
627x56 cb1_on00347
638x50 cb1_on0100258
   
Orange: nodes, hubs and links specific of cb1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cb1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner cb1_off Recurrence cb1_on Recurrence cb1_off Hub1? cb1_on Hub1? cb1_off Hub2? cb1_on Hub2? ConSurf1 ConSurf2
1Lig NT.F102 cb1_off26.25940YesYesYesNo05
23x25 NT.F102 cb1_off16.14740YesNoYesNo95
33x28 NT.F102 cb1_off12.86120YesNoYesNo65
4Lig NT.I105 cb1_off15.73550YesYesNoNo03
5NT.E106 NT.I105 cb1_off14.97880NoNoNoNo43
66x51 7x34 cb1_off14.48459.31895YesYesYesYes74
7NT.E106 NT.L111 cb1_off14.0390NoNoYesNo44
81x31 NT.L111 cb1_off11.53690NoNoYesNo24
91x28 1x31 cb1_off10.58194.03976YesNoNoNo62
101x46 1x49 cb1_off10.32250YesYesYesNo78
111x46 7x42 cb1_off13.84980YesYesNoNo77
126x48 7x41 cb1_off74.60410YesYesNoNo87
137x41 Lig cb1_off58.96010NoNoYesYes70
141x53 7x50 cb1_off13.31580NoNoNoNo99
151x53 7x53 cb1_off14.26170NoNoYesYes99
167x49 7x53 cb1_off97.83660YesYesYesYes99
172x46 7x53 cb1_off44.04850YesYesYesYes99
181x57 2x44 cb1_off67.03690NoNoNoNo76
192x43 2x44 cb1_off67.82410NoNoNoNo86
202x43 7x53 cb1_off74.77190NoNoYesYes89
211x57 I1x50 cb1_off66.42050NoNoNoNo79
221x56 8x50 cb1_off10.2896.42555YesNoNoYes88
238x47 8x50 cb1_off11.4210.0549915NoNoNoYes88
242x40 8x47 cb1_off12.48591.45939YesYesNoNo98
252x41 4x46 cb1_off12.92830NoNoNoNo38
262x39 2x40 cb1_off48.75350NoNoYesYes89
273x49 I2x57 cb1_off19.90660YesNoYesNo96
282x39 3x49 cb1_off48.67731.55668NoNoYesNo89
292x42 2x43 cb1_off29.38390YesNoNoNo88
302x42 2x46 cb1_off26.21060YesNoYesYes89
312x42 6x37 cb1_off40.17330YesNoNoYes88
323x29 E2.F268 cb1_off10.40190.0634518NoNoYesYes45
333x36 5x43 cb1_off37.71090YesYesYesYes76
343x36 6x48 cb1_off36.6460YesYesYesYes78
353x36 3x40 cb1_off12.45840YesYesNoNo77
363x51 3x55 cb1_off19.0950.0296108NoNoNoNo86
373x55 3x56 cb1_off21.25847.35618NoNoYesNo65
383x56 I2x56 cb1_off29.85080YesNoNoNo54
393x52 I2x56 cb1_off31.98364.67851NoNoNoNo54
403x52 I2x53 cb1_off17.29170NoNoYesYes57
413x52 I2x57 cb1_off16.81576.2225NoNoYesNo56
423x51 5x60 cb1_off16.92554.87733NoNoNoYes84
435x66 6x31 cb1_off15.56160NoNoYesNo05
445x62 5x66 cb1_off18.54580NoNoNoNo60
455x62 6x38 cb1_off22.05470NoNoNoNo66
465x58 6x38 cb1_off27.27550YesYesNoNo96
476x51 7x41 cb1_off15.42120.905245YesYesNoNo77
486x44 7x45 cb1_off21.09660NoNoYesNo99
493x36 6x44 cb1_off20.65110YesYesNoNo79
502x57 7x42 Shared13.92312.077YesYesNoNo77
512x57 Lig Shared11.726113.7606YesYesYesYes70
521x49 7x50 Shared14.554718.1599YesNoNoNo89
537x45 7x49 Shared10051.9543YesNoYesYes99
546x48 7x45 Shared79.019352.6142YesYesYesNo89
552x45 4x50 Shared14.060428.1853NoNoYesYes99
562x45 3x42 Shared30.998149.7081NoNoNoNo98
572x46 3x42 Shared32.166750.9814YesYesNoNo98
582x40 I1x50 Shared64.086310.7318YesYesNoNo99
592x45 4x46 Shared16.35822.6481NoNoNoNo98
60E2.F268 Lig Shared15.570715.2284YesYesYesYes50
615x58 6x37 Shared38.809466.3875YesYesNoYes98
623x49 I2x53 Shared20.922712.1235YesNoYesYes97
635x39 E2.W255 Shared18.606814.7293NoYesYesYes75
645x39 5x43 Shared21.664210.3257NoYesYesYes76
655x60 5x64 Shared12.568337.7623NoYesYesYes45
661x32 NT.L111 cb1_on018.5237NoNoYesNo44
672x65 NT.L111 cb1_on020.3299NoYesYesNo44
681x35 7x36 cb1_on012.0516NoNoNoNo54
691x35 2x61 cb1_on014.0017NoNoYesYes55
702x61 Lig cb1_on015.8503YesYesYesYes50
712x64 Lig cb1_on083.6675NoYesYesYes40
721x32 2x66 cb1_on014.8858NoNoNoNo44
731x42 7x42 cb1_on011.066NoNoNoNo67
741x42 7x47 cb1_on1.183910.9941NoNoYesNo67
751x46 7x46 cb1_on016.1125YesYesNoNo79
762x50 7x46 cb1_on1.1808517.6015NoYesNoNo99
772x50 3x39 cb1_on097.9992NoYesNoNo99
783x36 3x39 cb1_on097.9992YesYesNoNo79
793x36 Lig cb1_on097.4789YesYesYesYes70
801x46 7x47 cb1_on3.1397810.9306YesYesYesNo77
811x46 2x54 cb1_on5.8859411.4382YesYesNoNo77
821x50 7x50 cb1_on2.6942919.6785NoNoNoNo99
831x50 2x50 cb1_on2.7736254.0313NoNoNoYes99
841x49 7x51 cb1_on3.3228616.6328YesNoNoNo86
851x50 2x47 cb1_on035.6134NoNoNoNo99
862x40 8x50 cb1_on010.7149YesYesNoYes98
871x57 2x40 cb1_on028.3883NoNoYesYes79
881x54 1x57 cb1_on029.8604NoNoNoNo77
891x54 2x47 cb1_on032.7538NoNoNoNo79
902x46 2x50 cb1_on063.7394YesYesNoYes99
914x43 4x46 cb1_on016.7936NoNoNoNo18
922x41 4x43 cb1_on2.6332715.3088NoNoNoNo31
932x41 4x39 cb1_on9.1172613.8156NoNoNoNo31
942x42 3x49 cb1_on015.1184YesNoYesNo89
952x42 3x45 cb1_on018.088YesNoNoNo86
963x45 4x49 cb1_on0.13120621.0152NoNoNoNo66
974x49 4x50 cb1_on2.6088523.9086NoNoYesYes69
983x43 7x53 cb1_on0100NoNoYesYes89
992x46 3x43 cb1_on037.3858YesYesNoNo98
1003x43 7x49 cb1_on064.7039NoNoYesYes89
1012x50 7x49 cb1_on4.830236.5948NoYesYesYes99
1025x43 6x48 cb1_on040.8164YesYesYesYes68
1035x43 Lig cb1_on032.8426YesYesYesYes60
1042x64 E1.D184 cb1_on044.3824NoYesNoNo42
1053x25 E1.D184 cb1_on038.3883YesNoNoNo92
1063x25 E2.H270 cb1_on7.1644336.7766YesNoYesYes93
1073x22 E2.H270 cb1_on2.1145540.0381NoYesYesYes33
1082x64 NT.F108 cb1_on039.0482NoYesYesNo45
109E2.P269 NT.F108 cb1_on037.5804NoNoYesNo35
110E2.H270 E2.P269 cb1_on0.024410336.2606YesYesNoNo33
1113x22 3x23 cb1_on1.0862610.1988NoYesNoNo31
1123x22 3x26 cb1_on016.9374NoYesNoNo35
113E2.H270 E2.N256 cb1_on029.9746YesYesNoYes36
1143x26 E2.N256 cb1_on3.0482416.6244NoNoNoYes56
1153x26 4x61 cb1_on2.1694727.0685NoNoNoNo55
1163x27 4x61 cb1_on1.0862620.313NoNoNoNo55
1175x58 7x53 cb1_on079.7504YesYesYesYes99
1185x61 6x37 cb1_on053.5491NoNoNoYes98
1193x54 5x61 cb1_on051.2817NoNoNoNo99
1203x54 5x64 cb1_on2.2091449.3063NoNoYesYes95
1215x39 Lig cb1_on015.8376NoYesYesYes70
122E2.I271 Lig cb1_on012.3181NoYesYesYes30
123E2.F268 E2.I267 cb1_on5.0590415.5076YesYesYesNo54
1246x58 E2.I267 cb1_on9.2881334.1074YesNoYesNo44
1256x58 E2.D266 cb1_on2.2945731.7259YesNoNoNo44
1267x34 Lig cb1_on019.797YesYesYesYes40
1277x34 E2.I267 cb1_on3.9209120.8545YesYesYesNo44
128E2.D266 E3.M371 cb1_on014.8181NoNoNoNo41
1297x31 E2.D266 cb1_on014.8181NoNoNoNo24
1305x60 5x63 cb1_on018.8409NoYesNoNo43
1315x63 5x66 cb1_on016.4382NoNoNoNo30
1325x66 5x70 cb1_on1.5225914.0271NoNoNoNo00
1337x51 7x55 cb1_on1.6629515.0973NoNoNoNo65
1347x52 7x53 cb1_on011.6751NoYesYesYes99
1352x62 2x66 cb1_on1.1686411.214NoNoNoNo54
1363x27 4x58 cb1_on013.5491NoNoNoNo55
1372x65 Lig cb1_on019.0398NoYesYesYes40
1386x48 6x51 cb1_on010.4442YesYesYesYes87
1392x46 7x49 cb1_on011.2479YesYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
LigNT.F102cb1_off4.5901101
LigNT.M103cb1_off11.9701101
LigNT.I105cb1_off11.0801101
1x39Ligcb1_off4.2201010
2x57LigShared12.67510.1151110
3x32LigShared16.3255.4550010
E2.F268LigShared7.313.21110
6x51Ligcb1_off4.81501110
7x38Ligcb1_off17.41500110
7x39Ligcb1_off8.8100110
7x41Ligcb1_off4.96501010
2x64NT.N101cb1_off13.2900112
E1.D184NT.N101cb1_off7.40500022
NT.F102NT.M103cb1_off4.97501011
2x60NT.F102cb1_off5.2801011
3x25NT.F102cb1_off6.96501321
3x28NT.F102cb1_off9.3101021
2x57NT.M103cb1_off6.8401111
2x60NT.M103cb1_off6.13501011
2x61NT.M103cb1_off3.73500111
2x64NT.D104cb1_off9.55500112
NT.E106NT.I105cb1_off4.100021
NT.E106NT.L111cb1_off5.300022
7x34NT.F108cb1_off5.3600112
1x392x57cb1_off3.96501011
1x392x61cb1_off4.62501011
1x402x61cb1_off6.0900021
2x577x42Shared11.574.2651112
2x603x28Shared7.654.591012
2x612x65Shared16.47.920111
2x642x65Shared10.757.350111
3x28E1.D184cb1_off9.6801022
3x29E2.F268Shared7.924.2650111
3x29E2.I271Shared3.5653.570111
3x335x43Shared10.9156.0650111
3x363x40cb1_off6.55501012
3x365x43cb1_off5.51501011
3x365x47cb1_off6.50501012
3x366x44cb1_off4.8701012
3x366x48cb1_off29.56501012
3x366x52cb1_off4.2601012
3x375x43Shared6.0658.490021
4x605x39Shared19.479.040021
5x39E2.W255Shared13.98513.020112
5x42E2.W255cb1_off4.0100022
E2.I271E2.S265Shared4.6451.550112
E2.F268E2.I267Shared10.059.421112
6x55E2.I267cb1_off3.64501112
7x34E2.I267Shared9.428.160112
6x55E2.F268cb1_off4.97501111
5x40E2.I271Shared4.9953.570021
5x435x44cb1_off5.28501112
5x435x47Shared6.119.1951112
6x446x48cb1_off3.41501022
6x487x41cb1_off18.2801021
6x516x55Shared4.243.5351111
6x517x34Shared6.093.6551111
6x517x41Shared4.763.9651111
6x547x34Shared6.917.5350021
1x432x57cb1_off3.0100021
1x362x61cb1_off2.7700021
3x303x33Shared2.732.730021
5x395x43Shared2.413.8550111
2x563x32Shared2.3053.070021
1x35NT.L111cb1_off2.1400122
2x53Ligcb1_off2.12500010
7x35NT.F108cb1_off2.0800022
2x572x58cb1_off1.96501112
3x304x57cb1_off1.9500022
2x533x35Shared1.8553.710012
1x381x39Shared1.51.50021
2x64NT.F108cb1_on04.8250112
E1.H181NT.M109cb1_on03.280122
2x65NT.L111cb1_on03.2150112
1x352x61cb1_on03.770121
1x357x39cb1_on03.6450121
2x572x61cb1_on010.7151111
2x577x38cb1_on04.621111
2x60Ligcb1_on04.721010
2x617x38cb1_on05.9450111
2x617x39cb1_on03.110111
2x61Ligcb1_on03.090110
2x64E1.H181cb1_on05.090112
2x64Ligcb1_on014.1150110
2x65Ligcb1_on06.4550110
3x29Ligcb1_on06.3650110
3x33Ligcb1_on09.20110
3x353x36cb1_on04.620021
3x363x39cb1_on03.3051012
3x367x41cb1_on09.081011
3x36Ligcb1_on05.3751010
3x406x48cb1_on06.130022
E2.F268E2.I271cb1_on07.5351111
5x39E2.I271cb1_on06.650111
E2.I271Ligcb1_on03.4150110
5x395x42cb1_on03.610112
5x39Ligcb1_on05.060110
5x436x48cb1_on03.281112
5x43Ligcb1_on015.341110
5x446x52cb1_on04.280022
5x446x55cb1_on07.290021
5x476x52cb1_on03.7251022
6x486x51cb1_on04.5551021
6x486x52cb1_on03.9851022
6x557x34cb1_on03.7351111
7x34Ligcb1_on03.20110
NT.E106NT.M109cb1_on04.060022
2x64NT.M109cb1_on03.110112
1x392x62cb1_on03.0951012
2x64E1.D184cb1_on03.5850112
3x25E1.D184cb1_on05.3751322
6x55Ligcb1_on03.1851110
7x347x37cb1_on02.7950112
1x392x58cb1_on02.4251012
3x334x57cb1_on01.680112
1x362x62cb1_on01.6250022
1x391x40cb1_on01.51012
2x657x35cb1_on01.4650112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
cb1_off 5U09-CB1-Taranabant
5TGZ-CB1-AM6538
cb1_on 6KPG-CB1-AM841-Gi1/β1/γ2
8K8J-CB1-Fenofibrate-chim(Gs-CtGq)/β1/γ2
Network Difference
Value cb1_off cb1_on
Imin 3.4 3.075
Number of Linked Nodes 284 282
Number of Specific Nodes 14 (4.93%) 12  (4.26%)
Number of Shared Nodes 270 (95.07%) 270  (95.74%)
Number of Links 315 318
Number of Specific Links 174 (55.24%) 177  (55.66%)
Number of Shared Links 141 (44.76%) 141  (44.34%)
Number of Hubs 46 38
Number of Specific Hubs 25 (54.35%) 17  (44.74%)
Number of Shared Hubs 21 (45.65%) 21  (55.26%)
Average % Shared Neighbours (Jaccard) 32.92
Average % Shared Neighbours (Otsuka) 41.41
Average % Shared Neighbours (Overlap Coefficient) 49.47
Average % Shared Cliques (k3-6) 50.94
Graphlets Similarity 0.671093
Paths Difference
Value cb1_off cb1_on
Number Of Nodes in MetaPath 62 83
Specific Nodes in MetaPath 25 (40.32%) 46  (55.42%)
Shared Nodes in MetaPath 270 (95.07%) 270  (95.07%)
Number Of Links MetaPath 65 90
Specific Links in MetaPath 49 (75.38%) 74  (82.22%)
Shared Links in MetaPath 141 (44.76%) 141  (44.76%)
Number of Shortest Paths 63052 66937
Length Of Smallest Path 3 3
Average Path Length 14.1993 13.1435
Length of Longest Path 32 29
Minimum Path Strength 0.7525 0.765
Average Path Strength 6.61941 5.43428
Maximum Path Strength 23.9225 13.8075
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.918106 0.926359
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.33333 4.16667
Average % Of Corr. Nodes 40.876 47.7822
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 47.9436 43.6338
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download cb1_off_on.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.