Orange: nodes, hubs and links specific of cck_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cck_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner cck_off Avg Int. Strength cck_on Avg Int. Strength cck_off Num Of Links cck_on Num Of Links ConSurf
11x31 cck_off00421
21x43 cck_off00425
31x46 cck_off00438
41x50 cck_off500439
52x53 cck_off500428
63x38 cck_off1000538
73x50 cck_off500539
83x56 cck_off00436
94x50 cck_off1000429
106x44 cck_off1000539
116x45 cck_off00426
127x49 cck_off500439
132x42 Shared100100568
14E1x50 Shared10033.3333548
15E1x52 Shared10050766
163x31 Shared5025445
173x51 Shared00548
184x41 Shared00447
194x61 Shared100100567
20E2 Shared10010012133
21E2x52 Shared10083.3333455
225x39 Shared10058.3333558
235x58 Shared50100449
246x48 Shared100100658
256x52 Shared1000547
26E3 Shared1001009103
277x42 Shared100100557
28Lig Shared10010011150
291x53 cck_on00249
302x50 cck_on025249
313x30 cck_on00346
323x49 cck_on00349
33I2x56 cck_on00245
34I2x57 cck_on00247
354x64 cck_on00255
365x47 cck_on5025348
376x30 cck_on00148
386x37 cck_on00348
396x43 cck_on00246
407x53 cck_on5050359
417x55 cck_on00246
428x50 cck_on025040
   
Orange: nodes, hubs and links specific of cck_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cck_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner cck_off Recurrence cck_on Recurrence cck_off Hub1? cck_on Hub1? cck_off Hub2? cck_on Hub2? ConSurf1 ConSurf2
17x33 E3 cck_off12.69075.82953NoNoYesYes43
22x60 Lig cck_off29.45218.64536NoNoYesYes70
32x60 7x42 cck_off29.38648.54389NoNoYesYes77
41x39 2x57 cck_off34.43820NoNoNoNo77
51x39 2x61 cck_off19.90235.5657NoNoNoNo76
62x61 2x65 cck_off17.44683.71892NoNoNoNo65
73x32 Lig cck_off59.80565.55556NoNoYesYes70
83x32 7x42 cck_off27.8370NoNoYesYes77
91x43 2x57 cck_off50.96953.71892YesNoNoNo57
101x43 2x54 cck_off43.9410YesNoNoNo57
111x46 2x54 cck_off41.57941.48148YesNoNoNo87
121x46 7x47 cck_off12.50765.88026YesNoNoNo87
131x46 1x50 cck_off22.30150YesNoYesNo89
141x50 7x50 cck_off10.02391.48148YesNoNoNo99
156x52 Lig cck_off64.99840YesYesYesYes70
163x39 6x44 cck_off47.14780NoNoYesNo99
172x46 3x39 cck_off53.08230NoNoNoNo99
182x46 7x49 cck_off51.35451.41045NoNoYesNo99
197x49 7x53 cck_off28.56470YesNoNoYes99
201x53 7x53 cck_off21.36720NoYesNoYes99
211x53 2x47 cck_off19.47984.51547NoYesNoNo99
221x54 2x47 cck_off17.57363.01877NoNoNoNo79
231x54 2x44 cck_off13.7330NoNoNoNo76
241x57 2x44 cck_off11.79873.00863NoNoNoNo76
252x53 3x32 cck_off32.43810YesNoNoNo87
262x49 3x35 cck_off49.49060NoNoNoNo86
272x49 3x38 cck_off55.15752.97818NoNoYesNo88
283x38 3x42 cck_off24.08090YesNoNoNo88
292x45 3x42 cck_off23.46591.517NoNoNoNo98
302x45 4x46 cck_off50.57059.51801NoNoNoNo97
312x41 4x46 cck_off14.3950NoNoNoNo57
323x38 4x50 cck_off28.28779.34551YesNoYesNo89
332x45 4x50 cck_off29.55079.3861NoNoYesNo99
343x43 6x44 cck_off65.53360NoNoYesNo89
353x43 6x41 cck_off64.40210NoNoNoNo88
365x54 6x41 cck_off63.33160NoNoNoNo88
375x58 6x34 cck_off58.26560YesYesNoNo98
383x50 6x34 cck_off23.91660YesNoNoNo98
393x46 6x37 cck_off10.21170NoNoNoYes98
402x52 4x50 cck_off10.36670NoNoYesNo79
414x60 5x39 cck_off10.78925.49467NoNoYesYes88
42E2x51 E3 cck_off43.0020NoNoYesYes43
43E2 E2x51 cck_off82.06020.167428YesYesNoNo34
44E1x50 E2 cck_off53.15740YesYesYesYes83
45E1x50 E1x52 cck_off28.90758.0619YesYesYesYes86
462x63 E1x50 cck_off12.76123.25216NoNoYesYes58
47E1x49 E2 cck_off12.5643.00863NoNoYesYes43
483x40 6x44 cck_off10.01468.82293NoNoYesNo89
493x50 3x54 cck_off14.13210YesNoNoNo99
505x61 6x34 cck_off34.05790NoNoNoNo98
513x54 5x61 cck_off14.40911.29376NoNoNoNo99
523x54 5x65 cck_off24.79460NoNoNoNo99
53E2 E2x52 cck_off63.79641.28361YesYesYesYes35
544x61 E2x52 cck_off41.85171.03501YesYesYesYes75
555x36 E2 cck_off42.67344.86555NoNoYesYes53
565x32 5x35 cck_off12.89739.64485NoNoNoNo54
575x36 5x40 cck_off38.44783.25216NoNoNoNo56
585x40 6x59 cck_off29.96851.62861NoNoNoNo66
595x37 6x59 cck_off25.71480NoNoNoNo46
605x37 6x60 cck_off21.45173.25216NoNoNoNo45
615x43 6x52 cck_off21.77570NoNoYesYes77
625x65 6x31 cck_off19.2920NoNoNoNo96
636x28 6x31 cck_off16.09930NoNoNoNo56
646x40 7x49 cck_off17.0290NoNoYesNo99
656x36 6x40 cck_off13.18370NoNoNoNo99
665x41 6x60 cck_off17.17921.62861NoNoNoNo65
676x36 7x56 cck_off11.24472.94774NoNoNoNo97
685x41 5x45 cck_off12.89730NoNoNoNo63
692x53 7x42 cck_off34.91240YesNoYesYes87
702x49 3x39 cck_off19.52671.49163NoNoNoNo89
712x53 6x48 cck_off23.04330YesNoYesYes88
726x58 Lig cck_off41.92221.3242NoNoYesYes40
736x58 E2x51 cck_off40.96440NoNoNoNo44
745x39 5x43 cck_off20.45642.86657YesYesNoNo87
755x39 E2x52 cck_off23.3250YesYesYesYes85
76E3 Lig Shared56.274913.9269YesYesYesYes30
772x57 7x42 Shared84.844433.105NoNoYesYes77
781x39 7x39 Shared12.507621.101NoNoNoNo77
796x48 6x52 Shared79.290122.8615YesYesYesYes87
806x44 6x48 Shared10099.4064YesNoYesYes98
812x53 3x35 Shared50.049313.1913YesNoNoNo86
823x47 5x54 Shared64.416299.9087NoNoNoNo98
833x47 5x58 Shared62.4442100NoNoYesYes99
842x42 4x46 Shared36.950110.1979YesYesNoNo87
852x42 3x46 Shared11.178949.4165YesYesNoNo89
865x58 6x37 Shared12.596847.174YesYesNoYes98
872x42 4x45 Shared23.43313.8255YesYesNoNo86
884x61 Lig Shared50.523520.0761YesYesYesYes70
893x51 5x61 Shared19.996218.346YesYesNoNo89
904x41 4x45 Shared20.536212.481YesYesNoNo76
915x35 E2 Shared17.179212.7803NoNoYesYes43
921x42 2x57 cck_on028.0213NoNoNoNo77
931x42 7x39 cck_on5.0284124.5814NoNoNoNo77
941x39 7x35 cck_on014.0183NoNoNoNo75
951x35 7x35 cck_on5.0284112.207NoNoNoNo45
963x36 Lig cck_on068.1279NoNoYesYes70
973x36 6x48 cck_on1.1221268.5033NoNoYesYes78
985x54 6x44 cck_on099.8681NoNoYesNo89
993x50 5x58 cck_on094.1755YesNoYesYes99
1003x50 7x53 cck_on059.0817YesNoNoYes99
1013x43 7x53 cck_on023.8052NoNoNoYes89
1023x43 7x49 cck_on022.5622NoNoYesNo89
1032x50 7x49 cck_on019.8123NoYesYesNo99
1042x50 7x46 cck_on2.5118610.1877NoYesNoNo99
1052x43 7x53 cck_on5.9298644.6017NoNoNoYes89
1062x43 7x54 cck_on043.4297NoNoNoNo88
1071x53 7x54 cck_on025.6672NoYesNoNo98
1087x54 8x50 cck_on018.1076NoNoNoYes80
1091x53 1x57 cck_on015.8549NoYesNoNo97
1101x57 2x40 cck_on011.5728NoNoNoNo79
1113x46 3x50 cck_on034.7489NoNoYesNo99
1122x42 3x49 cck_on023.4094YesYesNoYes89
1135x461 6x52 cck_on011.446NoNoYesYes77
1143x37 5x461 cck_on010.4313NoNoNoNo77
1152x53 2x56 cck_on014.6068YesNoNoNo87
1162x52 3x35 cck_on011.7656NoNoNoNo76
1172x52 3x31 cck_on9.6248610.3298NoNoYesYes75
118E2 Lig cck_on048.8737YesYesYesYes30
119E1x52 E2 cck_on018.4678YesYesYesYes63
1205x61 6x37 cck_on020.8473NoNoNoYes98
1213x49 4x41 cck_on012.3389NoYesYesYes97
1224x38 4x41 cck_on8.8548814.3785NoNoYesYes87
1234x38 4x40 cck_on2.9578911.5221NoNoNoNo85
1245x47 6x52 cck_on6.4369211.4307NoYesYesYes87
1256x33 6x37 cck_on1.4601621.9685NoNoNoYes98
1265x65 6x33 cck_on020.8574NoNoNoNo99
1275x65 6x30 cck_on2.6714919.7007NoNoNoYes98
1286x26 6x30 cck_on010.898NoNoNoYes48
1296x40 7x53 cck_on018.4526NoNoNoYes99
1306x40 7x52 cck_on1.9813117.1537NoNoNoNo99
1317x41 7x42 cck_on031.4764NoNoYesYes77
1326x48 7x41 cck_on4.751434.1299YesYesNoNo87
1332x56 7x42 cck_on2.5165511.8265NoNoYesYes77
1343x46 7x53 cck_on015.5708NoNoNoYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x533x32cck_off4.2401021
2x536x48cck_off3.9901022
2x537x42cck_off5.27501022
2x567x42Shared4.036.609170022
2x607x38cck_off8.23500111
2x607x42Shared11.055.324170112
2x60LigShared5.0353.721670110
2x647x35cck_off3.72500012
2x67E2Shared8.622.920021
E1x49E2Shared8.2353.340831121
E1x50E1x52Shared4.82513.22081122
E1x50E2cck_off4.2601121
3x22E2Shared3.753.241670121
3x26E2cck_off4.900021
3x294x61Shared6.8655.030831111
3x294x65Shared7.1954.663331112
3x29Ligcck_off4.55501110
3x327x42cck_off7.18501112
3x32LigShared13.6756.871110
3x366x48Shared7.976.538331112
3x366x52cck_off7.2101111
4x574x61Shared4.195.08750021
4x61E2x52Shared20.1156.41751111
4x615x39Shared12.064.823331112
4x61LigShared6.21513.29081110
4x64E2Shared16.1910.37331121
4x65E2x52Shared4.624.413330021
E2E2Shared49.6353.4951111
E2E2x51Shared9.9659.485831111
6x58E2x51cck_off19.19501111
E2x51E3cck_off4.6501111
E2E2x52Shared6.75.0651111
5x39E2x52cck_off7.0201121
5x36E2Shared10.655.163331121
5x35E2Shared11.2156.263331121
5x395x43Shared14.23514.23751122
5x436x52cck_off4.8700021
5x476x52Shared11.7855.525830021
6x486x52Shared4.516.06251021
6x487x41Shared7.4156.898331022
6x517x37Shared3.683.7450012
6x517x41Shared6.193.703330012
6x51Ligcck_off6.85500010
6x52Ligcck_off5.4501010
6x55LigShared16.35511.11080010
6x57E3Shared22.47518.57080121
6x58E3Shared8.610.92751111
6x58LigShared35.9320.45671110
6x61E3Shared13.324.350830121
E3E3Shared16.2458.79251111
E3LigShared8.76523.09831110
7x33E3Shared3.93.008331121
7x347x37Shared4.423.928330112
7x34LigShared19.3320.890110
7x317x33cck_off2.0300022
6x54Ligcck_off1.9400010
5x445x47cck_off1.8300022
5x33E3cck_off0.72500021
2x532x56cck_on03.56751022
2x563x32cck_on06.3450021
3x36Ligcck_on06.498331110
4x64E2x52cck_on09.28251121
E2Ligcck_on011.72921110
E2x51Ligcck_on08.041110
E2x52Ligcck_on09.51110
5x39E2cck_on04.421121
5x4616x52cck_on03.760021
6x576x61cck_on06.234170122
7x347x38cck_on03.990830111
7x387x42cck_on06.449170112
7x417x42cck_on03.815830022
E1x52E2cck_on03.6251121
3x294x64cck_on06.24251112
4x614x64cck_on06.45251112
7x38Ligcck_on05.791670110
5x446x52cck_on02.996670021
6x62E3cck_on02.8250021
3x223x26cck_on02.64750122
2x64Ligcck_on02.39750010
7x31E3cck_on02.168330021
6x54E3cck_on01.445830011

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
cck_off ccka_off
cck_on ccka_on
cckb_on
Network Difference
Value cck_off cck_on
Imin 3.665 3.47
Number of Linked Nodes 243 266
Number of Specific Nodes 2 (0.82%) 25  (9.40%)
Number of Shared Nodes 241 (99.18%) 241  (90.60%)
Number of Links 271 291
Number of Specific Links 114 (42.07%) 134  (46.05%)
Number of Shared Links 157 (57.93%) 157  (53.95%)
Number of Hubs 28 30
Number of Specific Hubs 12 (42.86%) 14  (46.67%)
Number of Shared Hubs 16 (57.14%) 16  (53.33%)
Average % Shared Neighbours (Jaccard) 41.17
Average % Shared Neighbours (Otsuka) 50.17
Average % Shared Neighbours (Overlap Coefficient) 58.91
Average % Shared Cliques (k3-6) 77.17
Graphlets Similarity 0.439371
Paths Difference
Value cck_off cck_on
Number Of Nodes in MetaPath 82 58
Specific Nodes in MetaPath 47 (57.32%) 23  (39.66%)
Shared Nodes in MetaPath 241 (99.18%) 241  (99.18%)
Number Of Links MetaPath 91 59
Specific Links in MetaPath 75 (82.42%) 43  (72.88%)
Shared Links in MetaPath 157 (57.93%) 157  (57.93%)
Number of Shortest Paths 61516 43425
Length Of Smallest Path 3 3
Average Path Length 13.6525 12.4902
Length of Longest Path 29 27
Minimum Path Strength 0.7625 0.545
Average Path Strength 7.27332 5.56757
Maximum Path Strength 26.1425 20.8531
Minimum Path Correlation 0.7 0.700833
Average Path Correlation 0.920357 0.916175
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.54545 4.16667
Average % Of Corr. Nodes 45.556 45.2021
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 39.6934 36.0052
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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