Orange: nodes, hubs and links specific of cck_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cck_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner cck_off Avg Int. Strength cck_on Avg Int. Strength cck_off Num Of Links cck_on Num Of Links ConSurf
11x31 cck_off00421
21x43 cck_off00425
31x46 cck_off00428
42x53 cck_off500428
53x31 cck_off500435
63x38 cck_off1000538
73x50 cck_off500539
83x51 cck_off00538
94x50 cck_off1000439
106x44 cck_off1000529
116x45 cck_off00436
126x52 cck_off10016.6667537
137x49 cck_off5050439
14Lig Shared10010011170
151x50 Shared5050449
162x42 Shared100100558
17E1x50 Shared100100558
18E1x52 Shared10050746
193x56 Shared00446
204x41 Shared00447
214x61 Shared10050547
22E2 Shared10010012113
23E2x52 Shared10050445
245x39 Shared10033.3333558
255x58 Shared50100449
266x48 Shared100100658
27E3 Shared100100993
287x42 Shared100100557
291x35 cck_on050244
301x52 cck_on00147
311x53 cck_on00259
322x50 cck_on050249
332x51 cck_on00347
342x57 cck_on00347
353x49 cck_on00349
36I2x56 cck_on033.3333255
37I2x57 cck_on00147
385x50 cck_on00249
396x50 cck_on00249
407x34 cck_on00245
417x37 cck_on00346
427x38 cck_on00146
437x52 cck_on00149
447x53 cck_on5050359
457x54 cck_on00148
467x55 cck_on00246
478x52 cck_on00040
   
Orange: nodes, hubs and links specific of cck_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cck_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner cck_off Recurrence cck_on Recurrence cck_off Hub1? cck_on Hub1? cck_off Hub2? cck_on Hub2? ConSurf1 ConSurf2
12x60 7x42 cck_off29.68990.771724NoNoYesYes77
23x32 7x42 cck_off28.11550NoNoYesYes77
32x60 Lig cck_off29.73730NoNoYesYes70
4E3 Lig cck_off57.07518.54298YesYesYesYes30
57x33 E3 cck_off12.86041.57818NoNoYesYes43
67x32 7x33 cck_off10.02470NoNoNoNo34
72x61 2x65 cck_off17.65462.75891NoNoNoNo65
81x39 2x61 cck_off20.13944.12872NoNoNoNo76
91x39 2x57 cck_off34.84920NoNoNoYes77
101x43 2x57 cck_off51.57912.75891YesNoNoYes57
111x43 2x54 cck_off44.4660YesNoNoNo57
121x46 7x47 cck_off12.65650YesNoNoNo87
131x50 7x50 cck_off10.14321.16144YesYesNoNo99
141x53 7x53 cck_off21.63320NoYesNoYes99
157x49 7x53 cck_off28.92170YesNoNoYes99
162x46 7x49 cck_off52.00110.482328NoNoYesNo99
172x46 3x39 cck_off53.75090NoNoNoNo99
182x49 3x39 cck_off20.18681.47013NoNoNoNo89
192x49 3x35 cck_off51.83990NoNoNoNo86
202x53 3x35 cck_off52.39476.8259YesNoNoNo86
212x53 7x42 cck_off35.45140YesNoYesYes87
223x39 6x44 cck_off47.65740NoNoYesNo99
232x53 6x48 cck_off23.17430YesNoYesYes88
241x57 2x44 cck_off11.94521.41225NoNoNoNo76
251x54 2x44 cck_off13.90360NoNoNoNo76
261x54 2x47 cck_off17.79210NoNoNoNo79
271x53 2x47 cck_off19.72211.41611NoYesNoNo99
282x49 3x38 cck_off58.0522.93641NoNoYesNo88
293x38 3x42 cck_off25.49320YesNoNoNo88
302x45 3x42 cck_off24.8721.47013NoNoNoNo98
312x41 4x46 cck_off14.53910NoNoNoNo57
323x43 6x44 cck_off64.89950NoNoYesNo89
333x43 6x41 cck_off63.75660NoNoNoNo88
345x54 6x41 cck_off62.67550NoNoNoNo88
355x58 6x34 cck_off57.4640YesYesNoNo98
363x50 6x34 cck_off22.59580YesNoNoNo98
372x42 4x45 cck_off26.58380YesYesNoNo86
382x52 4x50 cck_off10.66480NoNoYesNo79
394x60 5x39 cck_off11.07745.79951NoNoYesYes88
404x59 4x60 cck_off10.0913.00587NoNoNoNo48
414x61 E2x52 cck_off42.44590.451459YesYesYesYes75
42E2 E2x52 cck_off64.60550.601945YesYesYesYes35
43E1x50 E2 cck_off53.87420YesYesYesYes83
446x58 Lig cck_off42.52181.35052NoNoYesYes40
456x58 E2x51 cck_off41.54970NoNoNoNo44
46E2 E2x51 cck_off83.22270.0848896YesYesNoNo34
47E2x51 E3 cck_off43.60770NoNoYesYes43
48E1x49 E2 cck_off12.73240NoNoYesYes43
493x40 6x44 cck_off10.13370NoNoYesNo89
503x50 3x54 cck_off14.21190YesNoNoNo99
515x61 6x34 cck_off34.44140NoNoNoNo98
523x51 5x61 cck_off20.13940YesNoNoNo89
533x54 5x61 cck_off14.53431.20775NoNoNoNo99
543x54 5x65 cck_off25.08060NoNoNoNo99
554x41 4x45 cck_off23.66751.48171YesYesNoNo76
565x36 E2 cck_off43.24264.7654NoNoYesYes53
575x32 5x35 cck_off13.0699.4652NoNoNoNo54
585x36 5x40 cck_off38.96053.18336NoNoNoNo56
595x40 6x59 cck_off30.3681.59361NoNoNoNo66
605x37 6x59 cck_off26.05750NoNoNoNo46
615x37 6x60 cck_off21.73753.18336NoNoNoNo45
625x43 6x52 cck_off21.80860NoNoYesNo77
635x65 6x31 cck_off19.51350NoNoNoNo96
646x28 6x31 cck_off16.28414.12872NoNoNoNo56
656x40 7x49 cck_off17.2420NoNoYesNo99
666x36 6x40 cck_off13.34880NoNoNoNo99
674x38 4x41 cck_off11.90727.34681NoNoYesYes87
685x41 6x60 cck_off17.4081.59361NoNoNoNo65
696x36 7x56 cck_off11.38562.82451NoNoNoNo97
705x41 5x45 cck_off13.0690NoNoNoNo63
713x32 Lig cck_off61.75084.05155NoNoYesYes70
722x53 3x32 cck_off34.11420YesNoNoNo87
733x46 6x37 cck_off10.40880NoNoNoNo98
745x39 5x43 cck_off20.46193.00587YesYesNoNo87
755x39 E2x52 cck_off23.55840YesYesYesYes85
762x57 7x42 Shared85.86430.1281NoYesYesYes77
771x39 7x39 Shared12.656517.0705NoNoNoNo77
781x46 2x54 Shared42.076119.8912YesNoNoNo87
791x46 1x50 Shared22.567319.7639YesNoYesYes89
806x44 6x48 Shared100100YesNoYesYes98
816x48 6x52 Shared79.263139.9676YesYesYesNo87
826x52 Lig Shared64.99939.5701YesNoYesYes70
832x45 4x46 Shared53.613422.654NoNoNoNo97
843x38 4x50 Shared29.74212.9843YesNoYesNo89
852x45 4x50 Shared31.212119.9298NoNoYesNo99
863x47 5x54 Shared63.770999.2283NoNoNoNo98
873x47 5x58 Shared61.779298.5337NoNoYesYes99
882x42 4x46 Shared39.856824.0045YesYesNoNo87
892x42 3x46 Shared11.395169.3124YesYesNoNo89
904x61 Lig Shared51.223415.7702YesYesYesYes70
91E1x50 E1x52 Shared29.296326.9447YesYesYesYes86
922x63 E1x50 Shared12.931516.4377NoNoYesYes58
935x58 6x37 Shared12.798725.3125YesYesNoNo98
945x35 E2 Shared17.40812.5598NoNoYesYes43
951x35 7x35 cck_on5.088210.5302NoYesNoNo45
961x39 7x35 cck_on011.8537NoNoNoNo75
971x42 7x39 cck_on5.088220.9021NoNoNoNo77
981x42 2x57 cck_on027.1338NoNoNoYes77
992x54 2x57 cck_on020.1034NoNoNoYes77
1001x50 2x50 cck_on2.5749218.56YesYesNoYes99
1012x50 7x49 cck_on017.522NoYesYesNo99
1023x43 7x49 cck_on017.8423NoNoYesNo89
1033x43 7x53 cck_on018.3284NoNoNoYes89
1042x43 7x53 cck_on6.0034137.4479NoNoNoYes89
1052x43 7x54 cck_on036.4099NoNoNoYes88
1061x53 7x54 cck_on018.5214NoYesNoYes98
1077x54 8x50 cck_on015.4576NoYesNoNo80
1081x56 8x50 cck_on014.7554NoNoNoNo80
1091x56 8x57 cck_on013.6209NoNoNoNo80
1101x60 8x57 cck_on012.4865NoNoNoNo60
1113x50 7x53 cck_on053.0637YesNoNoYes99
1123x46 3x50 cck_on070.3542NoNoYesNo99
1132x42 4x42 cck_on2.9305811.3559YesYesNoNo87
1147x41 7x42 cck_on018.0429NoNoYesYes77
1156x48 7x41 cck_on4.8700725.4785YesYesNoNo87
1165x54 6x44 cck_on099.5987NoNoYesNo89
1173x50 5x58 cck_on089.4737YesNoYesYes99
1182x42 3x49 cck_on038.4126YesYesNoYes89
1197x38 7x42 cck_on016.8081NoYesYesYes67
1207x38 Lig cck_on013.702NoYesYesYes60
1212x63 Lig cck_on019.0963NoNoYesYes50
122E2x50 Lig cck_on019.2314NoNoYesYes90
123E1x50 E2x50 cck_on4.1303116.3876YesYesNoNo89
124E2 Lig cck_on032.6401YesYesYesYes30
1253x36 Lig cck_on038.4782NoNoYesYes70
1263x36 6x48 cck_on1.1475738.5823NoNoYesYes78
1277x34 7x37 cck_on4.0449510.2022NoYesNoYes56
1286x50 7x37 cck_on7.2410921.8707NoYesNoYes96
1296x49 6x50 cck_on017.2094NoNoNoYes69
1305x47 6x49 cck_on016.0248NoNoNoNo86
1315x47 6x45 cck_on5.0407812.4248NoNoYesNo86
1326x51 7x41 cck_on4.3958614.1766NoNoNoNo77
1336x51 7x37 cck_on6.8190413.8409NoNoNoYes76
1343x49 I2x56 cck_on023.6611NoYesNoYes95
1353x52 I2x56 cck_on021.8514NoNoNoYes65
1363x52 3x56 cck_on020.4931NoNoYesYes66
1373x51 3x56 cck_on8.5546314.983YesNoYesYes86
1383x51 3x55 cck_on3.4474610.7694YesNoNoNo87
1395x61 6x37 cck_on024.0624NoNoNoNo98
1405x61 5x65 cck_on021.697NoNoNoNo99
1415x65 6x34 cck_on019.3548NoNoNoNo98
1425x66 6x34 cck_on015.5039NoNoNoNo68
1435x66 6x31 cck_on013.0846NoNoNoNo66
1447x52 7x53 cck_on012.2627NoYesNoYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x60Ligcck_off5.03500110
3x29Ligcck_off4.55501010
3x32LigShared13.6756.571110
4x61LigShared6.21515.89671110
6x51Ligcck_off6.85500010
6x52LigShared5.454.633331110
6x55LigShared16.35511.23830010
6x58LigShared35.9313.75671110
E3LigShared8.76529.98831110
7x34LigShared19.3321.72670110
2x533x32cck_off4.2401021
2x536x48cck_off3.9901022
2x537x42cck_off5.27501022
2x567x42Shared4.0310.08170022
2x607x38Shared8.2353.886670111
2x607x42Shared11.057.941670112
2x622x63Shared5.9252.5151021
2x62E1x52cck_off4.39501022
2x63E1x50Shared8.674.091671112
2x63E1x52cck_off4.3301112
2x647x35cck_off3.72500012
2x67E2Shared8.623.590021
E1x49E2cck_off8.23501021
E1x50E1x52Shared4.8259.291671122
3x25E1x50Shared4.196.0551122
E1x50E2cck_off4.2601121
E1x50E2x50Shared10.4758.8451121
3x22E2Shared3.754.631670121
3x25E2x50Shared7.286.976671121
3x26E2cck_off4.900021
3x294x61cck_off6.86501011
3x294x65Shared7.1954.796671012
3x327x42cck_off7.18501112
3x366x48Shared7.975.718331112
3x366x52cck_off7.2101111
4x574x61Shared4.193.591670021
4x61E2x52Shared20.1158.691671111
4x615x39Shared12.063.858331112
4x64E2Shared16.1914.0051121
4x65E2x52Shared4.625.403330021
E2E2Shared49.6347.66331111
E2E2x51Shared9.96511.53171111
6x58E2x51cck_off19.19501111
E2x51E3cck_off4.6501111
E2E2x52Shared6.74.103331111
5x39E2x52cck_off7.0201121
5x36E2Shared10.653.833331121
5x35E2Shared11.2157.731671121
5x395x43Shared14.23513.28671122
5x436x52cck_off4.8700021
5x476x52cck_off11.78500021
6x486x52Shared4.516.726671021
6x487x41Shared7.4155.353331022
6x517x37Shared3.683.7450012
6x517x41Shared6.193.703330012
6x57E3Shared22.47515.36170121
6x58E3Shared8.611.24671111
6x61E3Shared13.323.673330121
E3E3Shared16.2457.0051111
7x33E3Shared3.93.828331021
7x347x37Shared4.424.6650112
7x317x33cck_off2.0300022
6x54Ligcck_off1.9400110
5x445x47cck_off1.8300022
5x33E3cck_off0.72500021
2x563x32cck_on06.750021
2x63Ligcck_on04.431671110
2x64Ligcck_on04.953330010
3x223x26cck_on04.2950122
3x36Ligcck_on06.731110
E2Ligcck_on016.17171110
E2x50Ligcck_on05.158331110
E2x51Ligcck_on012.05831110
E2x52Ligcck_on012.97671110
5x39E2cck_on05.981671121
6x576x61cck_on06.698330122
7x347x38cck_on04.0750111
7x387x42cck_on09.630112
7x417x42cck_on07.206670022
7x38Ligcck_on03.876670110
2x532x56cck_on03.4351022
5x446x52cck_on03.193330021
6x62E3cck_on02.2950021
7x31E3cck_on01.858330021
6x547x34cck_on01.350111
6x547x37cck_on01.350112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
cck_off ccka_off
cck_on ccka_on
cckb_on
Network Difference
Value cck_off cck_on
Imin 3.665 3.62667
Number of Linked Nodes 243 262
Number of Specific Nodes 4 (1.65%) 23  (8.78%)
Number of Shared Nodes 239 (98.35%) 239  (91.22%)
Number of Links 271 286
Number of Specific Links 124 (45.76%) 139  (48.60%)
Number of Shared Links 147 (54.24%) 147  (51.40%)
Number of Hubs 28 34
Number of Specific Hubs 13 (46.43%) 19  (55.88%)
Number of Shared Hubs 15 (53.57%) 15  (44.12%)
Average % Shared Neighbours (Jaccard) 38.37
Average % Shared Neighbours (Otsuka) 47.55
Average % Shared Neighbours (Overlap Coefficient) 56.50
Average % Shared Cliques (k3-6) 77.00
Graphlets Similarity 0.477668
Paths Difference
Value cck_off cck_on
Number Of Nodes in MetaPath 85 66
Specific Nodes in MetaPath 48 (56.47%) 29  (43.94%)
Shared Nodes in MetaPath 239 (98.35%) 239  (98.35%)
Number Of Links MetaPath 94 69
Specific Links in MetaPath 75 (79.79%) 50  (72.46%)
Shared Links in MetaPath 147 (54.24%) 147  (54.24%)
Number of Shortest Paths 61775 50785
Length Of Smallest Path 3 3
Average Path Length 13.6745 14.1993
Length of Longest Path 29 32
Minimum Path Strength 0.725 0.450833
Average Path Strength 7.26101 5.88553
Maximum Path Strength 26.1425 22.3589
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.920326 0.917055
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.54545 3.57143
Average % Of Corr. Nodes 45.5042 43.132
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 39.6782 37.778
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download cck_off_on.zip<



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