Orange: nodes, hubs and links specific of ccka_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ccka_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ccka_off Avg Int. Strength ccka_on Avg Int. Strength ccka_off Num Of Links ccka_on Num Of Links ConSurf
11x31 ccka_off6.092512.1833431
21x46 ccka_off5.126255.68428
32x53 ccka_off5.441256.54428
43x31 ccka_off7.141259.96667435
53x38 ccka_off6.2058.68333538
63x50 ccka_off6.916.47539
73x51 ccka_off5.51610.7538
84x50 ccka_off7.1512510.04439
9E2.K187 ccka_off3.64757.18412
10E2x51 ccka_off7.7987519.525424
115x39 ccka_off9.65810.1367538
125x47 ccka_off6.461257.15438
136x44 ccka_off6.1917.865529
146x45 ccka_off6.043753.90333436
156x52 ccka_off6.7655.34333537
16E3.E344 ccka_off4.5937510.5933431
17Lig Shared10.915511.624811210
181x43 Shared4.086.2975445
191x50 Shared5.27256.21449
202x42 Shared5.5214.822558
21E1x50 Shared6.4846.374558
22E1x52 Shared5.216438.47746
233x56 Shared5.36755.155446
244x41 Shared6.871255.11447
254x61 Shared9.8898.1025547
26E2x52 Shared9.613757.6025445
27E2.L200 Shared7.016256.575444
285x58 Shared6.811257.186459
296x48 Shared6.989176.302658
306x57 Shared5.618756.79445
317x42 Shared8.868.475567
327x49 Shared5.771256.454459
337x53 Shared5.515.185469
341x39 ccka_on12.52839.005347
351x53 ccka_on3.48256.26249
361x60 ccka_on5.115.7775346
372x50 ccka_on7.0655.42857279
383x41 ccka_on6.751673.49346
393x47 ccka_on5.564.1325349
403x49 ccka_on10.24337.72349
414x57 ccka_on3.531674.2925348
42E2.M195 ccka_on4.0058.585344
435x50 ccka_on5.41253.1125249
447x32 ccka_on5.191674.6525343
457x37 ccka_on4.111673.0375346
467x52 ccka_on5.1554.3159
477x55 ccka_on1.9554.0175246
488x50 ccka_on07.708050
   
Orange: nodes, hubs and links specific of ccka_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ccka_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ccka_off Recurrence ccka_on Recurrence ccka_off Hub1? ccka_on Hub1? ccka_off Hub2? ccka_on Hub2? ConSurf1 ConSurf2
13x32 7x42 ccka_off24.90210NoNoYesYes77
22x60 Lig ccka_off26.54090NoNoYesYes70
31x30 1x34 ccka_off21.39828.25251NoNoNoNo15
41x34 1x38 ccka_off23.72125.51172NoNoNoNo55
51x38 7x39 ccka_off28.33420NoNoNoNo57
61x39 7x39 ccka_off35.17085.51172NoYesNoNo77
71x39 2x57 ccka_off55.08470NoYesNoNo77
82x61 2x65 ccka_off16.71915.51172NoNoNoNo65
91x39 2x61 ccka_off19.06428.25251NoYesNoNo76
101x43 2x57 ccka_off48.5464.98163YesYesNoNo57
111x43 2x54 ccka_off41.90815.19246YesYesNoNo57
121x46 7x47 ccka_off11.99580YesNoNoNo87
131x53 7x53 ccka_off21.58030NoYesYesYes99
142x46 7x49 ccka_off64.36021.81314NoNoYesYes99
152x46 3x39 ccka_off66.02110NoNoNoNo99
162x49 3x39 ccka_off29.28872.07216NoNoNoNo89
172x49 3x35 ccka_off50.88560NoNoNoNo86
182x53 7x42 ccka_off55.71920YesNoYesYes87
193x39 6x44 ccka_off52.73410NoNoYesNo99
202x53 6x48 ccka_off34.85070YesNoYesYes88
211x54 2x44 ccka_off13.89950NoNoNoNo76
221x54 2x47 ccka_off17.7730NoNoNoNo79
231x53 2x47 ccka_off19.69322.08421NoYesNoNo99
242x49 3x38 ccka_off56.78420NoNoYesNo88
252x41 4x46 ccka_off14.11470NoNoNoNo57
263x43 6x44 ccka_off58.58850NoNoYesNo89
273x43 6x41 ccka_off57.61190NoNoNoNo88
285x54 6x41 ccka_off56.70690NoNoNoNo88
293x47 5x58 ccka_off57.24228.66815NoYesYesYes99
305x58 6x34 ccka_off55.22820YesYesNoNo98
313x50 6x34 ccka_off22.01620YesNoNoNo98
322x42 4x45 ccka_off25.47040YesYesNoNo86
332x52 4x50 ccka_off11.09090NoNoYesNo79
344x60 5x39 ccka_off12.07865.05391NoNoYesNo88
354x59 4x60 ccka_off10.70462.59623NoNoNoNo48
366x58 Lig ccka_off57.84365.74664NoNoYesYes40
376x58 E2x51 ccka_off49.20270NoNoYesNo44
38E2.M195 E2x51 ccka_off46.55410.0722848NoYesYesNo44
39E2.F185 E2.M195 ccka_off43.34820.138546NoNoNoYes44
40E2.A193 E2.F185 ccka_off41.61013.05403NoNoNoNo34
41E1x49 E2.A193 ccka_off33.31130NoNoNoNo43
42E1x49 E1x51 ccka_off31.53455.59605NoNoNoNo44
43E1x51 E1x52 ccka_off27.93698.37901NoNoYesYes46
445x47 6x52 ccka_off10.16940YesNoYesNo87
453x40 3x41 ccka_off10.52250NoNoNoYes86
463x50 3x54 ccka_off13.80010YesNoNoNo99
475x61 6x34 ccka_off32.89190NoNoNoNo98
483x51 5x61 ccka_off19.3290YesNoNoNo89
493x54 5x61 ccka_off14.17540NoNoNoNo99
503x54 5x65 ccka_off24.22340NoNoNoNo99
514x41 4x45 ccka_off22.68393.03596YesYesNoNo76
524x61 E2x52 ccka_off33.71413.18656YesYesYesYes75
53E2.L200 E2.P201 ccka_off13.43042.42154YesYesNoNo45
545x36 E2.L200 ccka_off26.70090NoNoYesYes54
555x35 E2.P201 ccka_off10.80950NoNoNoNo45
565x36 5x40 ccka_off24.07993.03596NoNoNoNo56
575x40 6x59 ccka_off18.80483.04801NoNoNoNo66
585x37 6x59 ccka_off16.15070NoNoNoNo46
595x37 6x60 ccka_off13.48566.08999NoNoNoNo45
605x43 6x52 ccka_off18.02680NoNoYesNo77
615x65 6x31 ccka_off18.60070NoNoNoNo96
626x28 6x31 ccka_off15.52720NoNoNoNo56
636x40 7x49 ccka_off16.80190NoNoYesYes99
646x36 6x40 ccka_off13.10490NoNoNoNo99
656x36 7x53 ccka_off13.61250NoNoYesYes99
666x36 7x56 ccka_off22.7172.09626NoNoNoNo97
674x38 4x41 ccka_off11.42756.0659NoNoYesYes87
685x41 6x60 ccka_off10.80953.04801NoNoNoNo65
696x32 7x56 ccka_off11.35570NoNoNoNo87
702x53 3x32 ccka_off22.96530YesNoNoNo87
713x46 6x37 ccka_off11.67580NoNoNoNo98
725x39 5x43 ccka_off15.99072.59623YesNoNoNo87
735x39 E2x52 ccka_off15.86930YesNoYesYes85
742x60 7x42 Shared27.026425.0346NoNoYesYes77
751x30 1x31 Shared19.064210.9813NoNoYesNo11
762x57 7x42 Shared10023.0589NoNoYesYes77
771x46 2x54 Shared39.673322.2758YesNoNoNo87
781x46 1x50 Shared21.34322.2878YesNoYesYes89
797x49 7x53 Shared41.108100YesYesYesYes99
802x53 3x35 Shared51.205710.2644YesNoNoNo86
816x44 6x48 Shared88.743668.3573YesNoYesYes98
826x48 6x52 Shared56.359378.0194YesYesYesNo87
836x52 Lig Shared48.639977.658YesNoYesYes70
841x57 2x44 Shared11.946112.3547NoNoNoNo76
853x38 3x42 Shared24.43311.415YesNoNoNo88
862x45 3x42 Shared23.96412.1981NoNoNoNo98
872x45 4x46 Shared51.349137.811NoNoNoNo97
883x38 4x50 Shared30.088823.0046YesNoYesNo89
892x45 4x50 Shared29.652927.4261NoNoYesNo99
903x47 5x54 Shared58.875514.0895NoYesNoNo98
912x42 4x46 Shared38.751937.7809YesYesNoNo87
922x42 3x46 Shared12.784979.2603YesYesNoNo89
934x61 Lig Shared48.419137.4315YesYesYesYes70
94E1x50 E1x52 Shared13.452512.7763YesYesYesYes86
955x58 6x37 Shared13.938126.3358YesYesNoNo98
96E2.L200 E2x52 Shared47.271419.0772YesYesYesYes45
97E3.L347 Lig Shared15.223729.7151NoNoYesYes50
986x57 E3.L347 Shared13.513227.0466YesYesNoNo55
993x32 Lig Shared47.00158.894NoNoYesYes70
1001x31 7x32 ccka_on9.6176113.6498YesNoNoYes13
1011x35 7x32 ccka_on024.2516NoNoNoYes43
1021x35 7x35 ccka_on4.8281237.0942NoNoNoNo45
1031x39 7x35 ccka_on039.6904NoYesNoNo75
1041x39 7x42 ccka_on055.0148NoYesYesYes77
1052x54 2x57 ccka_on017.4568NoNoNoNo77
1061x50 2x50 ccka_on2.4499326.3418YesYesNoYes99
1072x50 7x49 ccka_on042.3529NoYesYesYes99
1082x43 7x53 ccka_on5.997974.61NoNoYesYes89
1092x43 7x54 ccka_on071.321NoNoNoNo88
1107x54 8x50 ccka_on060.2012NoNoNoYes80
1111x56 8x50 ccka_on033.1667NoNoNoYes80
1121x56 8x57 ccka_on021.312NoNoNoNo80
1131x57 8x50 ccka_on021.33NoNoNoYes70
1141x60 8x57 ccka_on019.8422NoYesNoNo60
1151x60 I1x49 ccka_on014.3726NoYesNoNo66
1163x50 7x53 ccka_on066.9177YesNoYesYes99
1173x46 3x50 ccka_on081.4108NoNoYesNo99
1182x42 4x42 ccka_on2.8030712.0896YesYesNoNo87
1192x42 3x49 ccka_on057.1773YesYesNoYes89
1202x56 7x42 ccka_on2.4168225.0587NoNoYesYes77
1212x56 3x32 ccka_on027.2514NoNoNoNo77
1224x57 4x61 ccka_on5.904137.2267NoYesYesYes87
1233x34 4x57 ccka_on031.8234NoNoNoYes68
1243x34 4x54 ccka_on2.1078228.0465NoNoNoNo64
1254x50 4x54 ccka_on029.4139YesNoNoNo94
1262x60 3x32 ccka_on029.432NoNoNoNo77
1272x50 2x53 ccka_on012.2824NoYesYesNo98
128E2x50 Lig ccka_on026.6249NoNoYesYes90
129E1x50 E2x50 ccka_on1.9422821.1192YesYesNoNo89
130E2.M195 Lig ccka_on032.6245NoYesYesYes40
131E2.M195 E2.V183 ccka_on1.9588429.9922NoYesNoNo43
132E2.P184 E2.V183 ccka_on024.0889NoNoNoNo13
133E2.N194 E2.P184 ccka_on1.9698721.1192NoNoNoNo31
1343x36 Lig ccka_on075.8749NoNoYesYes70
1353x36 6x48 ccka_on1.4236175.9533NoNoYesYes78
1363x38 4x53 ccka_on4.0445830.2934YesNoNoNo88
1373x37 4x53 ccka_on2.0250527.8236NoNoNoNo78
1383x37 5x461 ccka_on017.6977NoNoNoNo77
1395x54 6x44 ccka_on066.9538NoNoYesNo89
1403x44 3x47 ccka_on017.7881NoNoNoYes79
1413x44 5x50 ccka_on010.2343NoNoNoYes79
1425x54 5x58 ccka_on052.0812NoNoYesYes89
1433x49 I2x57 ccka_on041.0337NoYesNoNo97
1443x49 4x41 ccka_on011.6981NoYesYesYes97
145I2x53 I2x57 ccka_on032.3414NoNoNoNo87
1463x52 I2x53 ccka_on029.4199NoNoNoNo68
1473x52 3x56 ccka_on026.4864NoNoYesYes66
1483x51 3x56 ccka_on8.2436714.6316YesNoYesYes86
1495x46 5x461 ccka_on015.2943NoNoNoNo57
1505x42 5x46 ccka_on1.9312512.7522NoNoNoNo55
1515x39 5x42 ccka_on3.8569810.1982YesNoNoNo85
152E2x52 Lig ccka_on020.3301YesYesYesYes50
1536x57 6x61 ccka_on018.1375YesYesNoNo54
1546x60 6x61 ccka_on012.1378NoNoNoNo54
1555x58 6x41 ccka_on022.33YesYesNoNo98
1566x41 6x45 ccka_on019.8964NoNoYesNo86
1575x47 6x45 ccka_on4.0997610.0416YesNoYesNo86
1586x33 6x37 ccka_on1.5394811.8125NoNoNoNo98
1595x65 6x34 ccka_on014.8786NoNoNoNo98
1605x61 6x37 ccka_on012.0896NoNoNoNo98
1617x52 7x53 ccka_on021.9987NoYesYesYes99
1626x48 7x45 ccka_on4.0556283.2902YesYesNoNo89
1637x34 Lig ccka_on5.6999413.1378NoNoYesYes50
1648x56 I1x49 ccka_on012.3547NoNoNoNo06
1658x53 8x56 ccka_on010.3247NoNoNoNo00
1661x32 1x35 ccka_on010.2765NoNoNoNo44
1677x45 7x49 ccka_on083.6576NoNoYesYes99
1683x50 5x58 ccka_on046.3406YesNoYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x60Ligccka_off5.03500110
3x29Ligccka_off4.55501010
3x32LigShared13.6755.571110
4x61LigShared6.21516.651110
6x51Ligccka_off6.85500010
6x52LigShared5.455.361110
6x55LigShared16.3555.880010
6x58LigShared35.9311.381110
E3.L347LigShared4.735.690110
7x34LigShared19.3329.360110
2x533x32ccka_off4.2401021
2x536x48ccka_off3.9901022
2x537x42ccka_off5.27501022
2x567x42Shared4.0312.10022
2x607x38Shared8.2355.490112
2x607x42Shared11.0510.470112
2x622x63Shared5.9253.392021
2x62E1x52ccka_off4.39502022
2x63E1x50ccka_off8.6702112
2x63E1x52ccka_off4.3302112
2x647x35ccka_off3.72500012
E1x50E1x52Shared4.8259.652122
3x25E1x50Shared4.195.592122
E1x50E2x50Shared10.4758.382121
3x25E2x50Shared7.287.282121
3x294x61Shared6.8653.751011
3x294x65ccka_off7.19501012
3x327x42ccka_off7.18501112
3x366x48Shared7.974.91112
3x366x52ccka_off7.2101111
4x574x61Shared4.194.790021
4x61E2x52Shared20.1157.221111
4x615x39ccka_off12.0601112
4x65E2x52Shared4.623.960021
E2.M195E2.V183Shared4.563.040112
E2.A193E2.F185Shared4.164.160021
E2.F185E2.M195Shared4.3558.710111
E2.L199E2x51ccka_off4.2500021
6x58E2x51ccka_off19.19501111
E2x51E3.E344ccka_off4.6501111
E2.L200E2x52Shared6.76.091021
5x39E2x52ccka_off7.0201021
5x36E2.L200ccka_off9.98500022
5x365x40Shared3.717.420021
5x395x43Shared14.23515.941022
5x406x59Shared3.664.390112
5x436x52ccka_off4.8700021
5x476x52ccka_off11.78500021
6x486x52Shared4.517.021121
6x487x41ccka_off7.41501122
6x517x37Shared3.684.420012
6x517x41ccka_off6.1900012
6x57E3.S342ccka_off3.7100022
6x57E3.L347Shared5.694.560021
6x58E3.E344Shared5.23512.791111
E3.E344E3.T340Shared7.0555.641112
E3.R345E3.S342ccka_off3.9500012
7x347x37Shared4.424.420112
E2.M195E2x51Shared3.116.130111
5x406x56ccka_off2.92500112
6x54Ligccka_off1.9400110
5x445x47ccka_off1.8300022
E3.E344E3.S348ccka_off1.43501111
2x563x32ccka_on06.480021
2x603x32ccka_on04.210111
2x63Ligccka_on03.532110
3x36Ligccka_on03.931110
E2.F185Ligccka_on06.990110
E2.M195Ligccka_on06.460110
E2x50Ligccka_on06.482110
E2x51Ligccka_on022.921110
E2x52Ligccka_on013.141110
5x366x58ccka_on04.670021
5x40Ligccka_on03.780110
5x446x52ccka_on03.650021
6x517x38ccka_on04.280012
E3.E344Ligccka_on013.351110
E3.S348Ligccka_on011.080010
7x387x42ccka_on010.550122
7x417x42ccka_on010.170022
2x64Ligccka_on02.950010
6x547x34ccka_on01.620111
6x547x37ccka_on01.620112
5x446x56ccka_on01.580022
E3.R345Ligccka_on01.240010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ccka_off 7F8Y-CCKA-Devazepide
7F8U-CCKA-Lintitript
ccka_on 7EZH-CCKA-Cholecystokinin-8-Gi1/β1/γ2
Network Difference
Value ccka_off ccka_on
Imin 3.58 3.52
Number of Linked Nodes 269 271
Number of Specific Nodes 18 (6.69%) 20  (7.38%)
Number of Shared Nodes 251 (93.31%) 251  (92.62%)
Number of Links 293 303
Number of Specific Links 143 (48.81%) 153  (50.50%)
Number of Shared Links 150 (51.19%) 150  (49.51%)
Number of Hubs 33 32
Number of Specific Hubs 16 (48.48%) 15  (46.88%)
Number of Shared Hubs 17 (51.52%) 17  (53.13%)
Average % Shared Neighbours (Jaccard) 36.57
Average % Shared Neighbours (Otsuka) 46.14
Average % Shared Neighbours (Overlap Coefficient) 55.69
Average % Shared Cliques (k3-6) 75.74
Graphlets Similarity 0.531134
Paths Difference
Value ccka_off ccka_on
Number Of Nodes in MetaPath 92 91
Specific Nodes in MetaPath 43 (46.74%) 42  (46.15%)
Shared Nodes in MetaPath 251 (93.31%) 251  (93.31%)
Number Of Links MetaPath 99 95
Specific Links in MetaPath 73 (73.74%) 69  (72.63%)
Shared Links in MetaPath 150 (51.19%) 150  (51.19%)
Number of Shortest Paths 53213 54720
Length Of Smallest Path 3 3
Average Path Length 13.7186 12.4941
Length of Longest Path 29 29
Minimum Path Strength 0.725 1.245
Average Path Strength 6.97515 6.24879
Maximum Path Strength 26.1425 18.9
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.92504 0.931433
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.54545 4.16667
Average % Of Corr. Nodes 49.5351 53.9875
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 36.4326 37.5824
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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