Orange: nodes, hubs and links specific of ccr2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ccr2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ccr2_off Avg Int. Strength ccr2_on Avg Int. Strength ccr2_off Num Of Links ccr2_on Num Of Links ConSurf
11x35 ccr2_off8.13212.2526
21x47 ccr2_off4.39253.22416
31x60 ccr2_off3.90251.59425
42x40 ccr2_off4.564.47438
52x60 ccr2_off8.10514.68426
63x32 ccr2_off7.019.24333536
73x33 ccr2_off9.7423.65525
83x41 ccr2_off3.8653.575425
93x50 ccr2_off4.60757.2419
103x55 ccr2_off5.2888.05537
114x61 ccr2_off10.52753.01414
124x64 ccr2_off11.586.29434
135x40 ccr2_off6.38259.345425
145x61 ccr2_off2.95754.61333438
156x40 ccr2_off7.26253.21333438
166x45 ccr2_off4.7316.86415
176x51 ccr2_off7.52610.28536
186x60 ccr2_off5.666.335424
191x39 Shared8.8647.8925547
202x38 Shared4.58.195446
212x42 Shared5.9357.3025447
222x44 Shared4.59753.5575446
23E1x50 Shared7.541435.70333768
243x28 Shared8.04256.6425446
253x36 Shared12.5358.075447
263x37 Shared6.6854.124457
273x42 Shared11.87257.02286477
284x50 Shared7.41255.53459
29E2 Shared12.736416.41331193
305x50 Shared4.38755.6125448
316x44 Shared9.67.4559
326x48 Shared10.67810.9675549
336x49 Shared3.71257.325445
347x42 Shared6.3025.4275547
35Lig Shared8.5590941.408111210
36NT ccr2_on011.0983060
371x27 ccr2_on4.333.335345
381x50 ccr2_on8.313336.4425349
391x57 ccr2_on4.123333.8375347
402x53 ccr2_on6.616675.8275346
412x56 ccr2_on6.063333.718357
423x44 ccr2_on3.653334.245348
433x45 ccr2_on5.7255.47246
443x47 ccr2_on7.933.6725249
45I2x57 ccr2_on1.866.404257
465x43 ccr2_on9.836676.685345
475x53 ccr2_on2.943.3125146
485x58 ccr2_on11.67334.83833368
49I3 ccr2_on05.2425040
506x47 ccr2_on6.256675.72348
516x61 ccr2_on4.9154.5625244
526x64 ccr2_on3.316673.6675341
53E3 ccr2_on06.2575040
547x38 ccr2_on10.35337.4725345
557x45 ccr2_on8.0533310.6675349
567x53 ccr2_on5.975.9575349
   
Orange: nodes, hubs and links specific of ccr2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ccr2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ccr2_off Recurrence ccr2_on Recurrence ccr2_off Hub1? ccr2_on Hub1? ccr2_off Hub2? ccr2_on Hub2? ConSurf1 ConSurf2
11x35 Lig ccr2_off24.02910YesNoYesYes60
21x35 1x39 ccr2_off12.0962.69736YesNoYesYes67
37x42 Lig ccr2_off14.33850YesYesYesYes70
41x35 2x64 ccr2_off10.04760YesNoNoNo65
51x39 2x57 ccr2_off28.45780YesYesNoNo77
61x42 2x57 ccr2_off24.94364.40668NoNoNoNo77
71x42 7x47 ccr2_off14.3260NoNoNoNo78
81x46 7x47 ccr2_off10.76172.48987NoNoNoNo88
92x54 7x46 ccr2_off24.16690NoNoNoNo68
101x47 2x54 ccr2_off11.83290YesNoNoNo66
111x50 2x54 ccr2_off13.0929.87057NoYesNoNo96
123x33 Lig ccr2_off41.28040YesNoYesYes50
133x33 3x37 ccr2_off75.0940YesNoYesYes57
143x37 5x46 ccr2_off1007.28189YesYesNoNo74
153x41 5x46 ccr2_off98.17090YesNoNoNo54
163x41 4x49 ccr2_off95.4460YesNoNoNo57
173x45 4x49 ccr2_off84.40870.128446NoYesNoNo67
182x42 3x45 ccr2_off83.33750.207489YesYesNoYes76
192x42 3x46 ccr2_off73.03930YesYesNoNo79
202x43 3x46 ccr2_off45.48990NoNoNoNo89
211x57 2x43 ccr2_off44.03662.46023NoYesNoNo78
222x40 I1x48 ccr2_off22.74490YesNoNoNo86
233x42 4x49 ccr2_off17.53322.40095YesYesNoNo77
243x36 6x44 ccr2_off31.08870YesYesYesYes79
256x44 6x45 ccr2_off24.49260YesYesYesNo95
266x41 6x45 ccr2_off19.24960NoNoYesNo85
273x43 6x41 ccr2_off15.81680NoNoNoNo88
286x48 6x51 ccr2_off26.72260YesYesYesNo96
292x60 E1x50 ccr2_off18.74220YesNoYesYes68
30E1x50 E1x52 ccr2_off10.91210YesYesNoNo87
313x33 4x61 ccr2_off28.35760YesNoYesNo54
324x61 E2 ccr2_off23.7662.45035YesNoYesYes43
333x40 6x44 ccr2_off18.30990NoNoYesYes89
343x40 5x50 ccr2_off16.30540NoNoYesYes88
353x43 6x40 ccr2_off12.50940NoNoYesNo88
363x44 5x50 ccr2_off10.21679.95949NoYesYesYes88
373x46 6x37 ccr2_off33.33120NoNoNoNo97
385x58 6x37 ccr2_off31.74027.25225NoYesNoNo87
393x47 5x58 ccr2_off25.57632.30214NoYesNoYes98
403x55 5x61 ccr2_off10.41090YesNoYesNo78
415x43 6x51 ccr2_off12.69730NoYesYesNo56
426x51 7x37 ccr2_off26.40323.15186YesNoNoNo67
436x29 I1x48 ccr2_off13.2360NoNoNoNo46
446x54 7x37 ccr2_off22.53190NoNoNoNo57
456x54 7x34 ccr2_off18.11584.96986NoNoNoNo54
466x58 7x34 ccr2_off15.89830NoNoNoNo44
476x58 7x30 ccr2_off13.6620NoNoNoNo44
482x37 2x40 ccr2_off10.19177.20285NoNoYesNo78
493x32 7x42 ccr2_off10.99350YesNoYesYes67
503x32 3x33 ccr2_off20.82810YesNoYesNo65
513x32 7x38 ccr2_off10.04136.18516YesNoNoYes65
521x39 7x42 Shared25.920813.803YesYesYesYes77
532x53 3x32 Shared17.151152.1984NoYesYesNo66
542x53 7x46 Shared25.563869.8449NoYesNoNo68
551x57 2x40 Shared35.191714.376NoYesYesNo78
563x42 4x50 Shared12.359166.6238YesYesYesYes79
573x36 3x37 Shared58.638217.3303YesYesYesYes77
587x38 Lig Shared21.6823.0807NoYesYesYes50
596x51 7x38 Shared30.543724.7308YesNoNoYes65
606x44 6x48 Shared12.139857.6228YesYesYesYes99
612x60 Lig Shared20.013816.362YesNoYesYes60
62E1x50 E2 Shared14.069220.4426YesYesYesYes83
633x47 5x57 Shared23.941419.4348NoYesNoNo97
643x51 5x57 Shared22.293917.0734NoNoNoNo87
653x51 3x55 Shared18.892514.6922NoNoYesNo87
666x51 6x55 Shared17.677318.6642YesNoNoNo66
675x40 6x55 Shared16.192715.6012YesNoNoNo56
683x36 5x43 Shared12.929171.732YesYesNoYes75
693x36 6x48 Shared14.664281.5828YesYesYesYes79
701x27 NT ccr2_on014.3958NoYesNoYes50
71Lig NT ccr2_on016.2138YesYesNoYes00
721x27 7x31 ccr2_on014.1587NoYesNoNo54
737x31 Lig ccr2_on016.2237NoNoYesYes40
741x30 7x32 ccr2_on014.3662NoNoNoNo41
751x27 7x32 ccr2_on1.9230819.1187NoYesNoNo51
761x39 Lig ccr2_on018.3678YesYesYesYes70
776x47 7x45 ccr2_on6.6274115.9668NoYesNoYes89
786x48 7x45 ccr2_on5.355824.1873YesYesNoYes99
795x39 5x43 ccr2_on082.5314NoNoNoYes55
805x39 E2 ccr2_on0.26935682.6302NoNoYesYes53
81E2 Lig ccr2_on080.5948YesYesYesYes30
827x38 7x42 ccr2_on015.9372NoYesYesYes57
832x57 7x42 ccr2_on021.8753NoNoYesYes77
841x43 2x57 ccr2_on013.1805NoNoNoNo77
851x50 2x50 ccr2_on8.2310217.0734NoYesNoNo99
862x50 7x46 ccr2_on069.9239NoNoNoNo98
873x32 Lig ccr2_on2.9566546.774YesNoYesYes60
887x54 8x50 ccr2_on012.1431NoNoNoNo78
891x53 7x54 ccr2_on014.5144NoNoNoNo97
901x53 1x57 ccr2_on016.7375NoNoNoYes97
911x57 2x44 ccr2_on8.8950134.542NoYesYesYes76
922x44 2x48 ccr2_on053.6805YesYesNoNo65
932x48 4x50 ccr2_on5.4059155.6763NoNoYesYes59
942x46 3x42 ccr2_on0100NoNoYesYes97
952x46 2x50 ccr2_on072.4533NoNoNoNo99
962x44 I1x49 ccr2_on012.1431YesYesNoNo66
972x38 2x42 ccr2_on7.1160123.4562YesYesYesYes67
982x42 3x42 ccr2_on029.8785YesYesYesYes77
992x38 I2x57 ccr2_on014.2772YesYesNoYes67
1002x46 3x43 ccr2_on2.1047461.2785NoNoNoNo98
1012x56 2x60 ccr2_on8.8386414.3266NoYesYesNo76
1023x28 E1x50 ccr2_on015.9569YesYesYesYes68
103E2x50 Lig ccr2_on011.0068NoNoYesYes90
1043x37 5x43 ccr2_on012.9631YesYesNoYes75
1053x36 3x40 ccr2_on010.0978YesYesNoNo78
1063x37 3x41 ccr2_on019.0396YesYesYesNo75
1073x41 4x52 ccr2_on1.8040616.7276YesNoNoNo54
1083x43 7x49 ccr2_on056.7928NoNoNoNo89
1097x45 7x49 ccr2_on059.8557NoYesNoNo99
1105x50 6x44 ccr2_on014.4749YesYesYesYes89
1113x47 5x54 ccr2_on021.4208NoYesNoNo98
1125x54 6x44 ccr2_on061.5255NoNoYesYes89
1135x54 5x58 ccr2_on038.3757NoNoNoYes88
1145x58 5x61 ccr2_on011.9949NoYesYesNo88
1154x48 4x52 ccr2_on014.3958NoNoNoNo44
1164x64 E2 ccr2_on9.5151614.4551YesNoYesYes43
1175x40 6x59 ccr2_on2.7123512.5185YesNoNoNo55
1185x44 6x52 ccr2_on019.1187NoNoNoNo58
1195x47 6x52 ccr2_on1.378121.4208NoNoNoNo88
1205x47 5x51 ccr2_on032.6351NoNoNoNo86
1215x51 6x44 ccr2_on034.8187NoNoYesYes69
1225x44 6x56 ccr2_on2.1548516.7968NoNoNoNo56
1235x58 6x40 ccr2_on016.4213NoYesYesNo88
1246x56 6x60 ccr2_on014.4551NoNoYesNo64
1256x60 6x64 ccr2_on012.0937YesNoNoYes41
1262x53 7x42 ccr2_on9.8283617.6564NoYesYesYes67
1276x44 7x45 ccr2_on3.4515241.982YesYesNoYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x277x32Shared8.61.430122
1x31Ligccr2_off6.1900010
1x341x35ccr2_off4.1500021
1x351x39Shared16.4116.411011
1x357x39ccr2_off4.4201012
1x35Ligccr2_off12.5301010
1x392x57ccr2_off7.0301112
1x397x39ccr2_off6.2401112
1x397x42Shared11.978.381111
2x533x32Shared9.2812.381021
2x537x42Shared4.983.731021
2x562x60Shared7.287.280121
2x60E1x50ccr2_off4.6901112
2x607x42ccr2_off4.6501111
2x60LigShared15.822.081110
3x25E1x50Shared3.923.921122
E1x50E2Shared6.185.851121
E1x50E2x50Shared16.989.141121
3x22E2Shared7.523.150021
3x25E2x50Shared7.287.281121
3x26E2ccr2_off7.1800021
3x294x65Shared10.9914.130111
3x29LigShared7.1112.760110
3x323x33ccr2_off8.7101111
3x327x38Shared4.495.611111
3x327x42ccr2_off4.7901111
3x32LigShared7.789.741110
3x333x37ccr2_off5.6601012
3x334x57Shared4.182.791012
3x334x61ccr2_off25.5101012
3x33Ligccr2_off4.6501010
4x61E2Shared6.043.011021
4x615x39ccr2_off8.9301022
4x64E2Shared16.087.51121
E2E2Shared4148.581111
E2x51E2x52Shared4.064.060111
5x36E2Shared4.836.041111
5x39E2Shared4.5312.441121
5x366x59ccr2_off4.3901112
5x436x51ccr2_off7.200122
6x517x38Shared8.9811.220021
6x547x34Shared4.763.170021
6x587x30ccr2_off4.1200022
6x587x34ccr2_off4.3900021
6x617x27Shared8.52.830111
7x35LigShared11.243.030110
7x38LigShared17.596.291110
7x42Ligccr2_off5.1201010
1x30Ligccr2_off3.4400010
1x352x64ccr2_off3.1501012
E2E2x52ccr2_off2.8901111
1x277x35ccr2_off2.8700121
E1x49E2ccr2_off2.8500021
7x36Ligccr2_off2.700010
1x392x61Shared2.672.671112
1x271x28ccr2_off1.5200121
6x617x30ccr2_off1.3300112
7x317x35ccr2_off1.3100111
LigNTccr2_on023.951101
NTNTccr2_on012.280111
E3NTccr2_on07.280111
1x27NTccr2_on05.760121
7x31NTccr2_on05.040111
1x277x31ccr2_on02.920121
1x282x66ccr2_on011.190112
1x317x35ccr2_on04.930011
1x357x35ccr2_on07.991011
1x39Ligccr2_on04.111110
2x577x42ccr2_on02.830021
3x264x65ccr2_on030021
3x335x43ccr2_on04.511012
3x375x43ccr2_on03.210122
4x65Ligccr2_on02.830110
E2Ligccr2_on012.571110
E2x50Ligccr2_on06.11110
E2x51Ligccr2_on06.630110
E2x52Ligccr2_on014.561110
5x36Ligccr2_on07.451110
5x395x43ccr2_on05.641122
6x586x61ccr2_on03.960021
6x61E3ccr2_on02.890111
6x61Ligccr2_on08.570110
E3Ligccr2_on08.90110
7x26E3ccr2_on05.960021
7x27Ligccr2_on012.480110
7x31Ligccr2_on04.630110
7x34Ligccr2_on04.340110
7x387x42ccr2_on06.771111
3x293x30ccr2_on01.820112
1x28Ligccr2_on01.610110
1x291x30ccr2_on01.370021
1x307x32ccr2_on01.370012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ccr2_off 6GPS-CCR2-MK0812
ccr2_on 7XA3-CCR2-CCL2-Gi1/β1/γ2
Network Difference
Value ccr2_off ccr2_on
Imin 3.89 2.83
Number of Linked Nodes 246 240
Number of Specific Nodes 23 (9.35%) 17  (7.08%)
Number of Shared Nodes 223 (90.65%) 223  (92.92%)
Number of Links 265 268
Number of Specific Links 139 (52.45%) 142  (52.99%)
Number of Shared Links 126 (47.55%) 126  (47.01%)
Number of Hubs 35 38
Number of Specific Hubs 18 (51.43%) 21  (55.26%)
Number of Shared Hubs 17 (48.57%) 17  (44.74%)
Average % Shared Neighbours (Jaccard) 33.01
Average % Shared Neighbours (Otsuka) 41.75
Average % Shared Neighbours (Overlap Coefficient) 50.97
Average % Shared Cliques (k3-6) 78.47
Graphlets Similarity 0.537865
Paths Difference
Value ccr2_off ccr2_on
Number Of Nodes in MetaPath 63 71
Specific Nodes in MetaPath 27 (42.86%) 35  (49.30%)
Shared Nodes in MetaPath 223 (90.65%) 223  (90.65%)
Number Of Links MetaPath 69 76
Specific Links in MetaPath 51 (73.91%) 58  (76.32%)
Shared Links in MetaPath 126 (47.55%) 126  (47.55%)
Number of Shortest Paths 34912 30463
Length Of Smallest Path 3 3
Average Path Length 12.4178 11.0867
Length of Longest Path 27 24
Minimum Path Strength 1.355 1.365
Average Path Strength 6.84733 6.56464
Maximum Path Strength 17.11 17.77
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.914569 0.941627
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.34783 6.25
Average % Of Corr. Nodes 49.5827 61.7051
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 44.1211 46.2707
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download ccr2_off_on.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.