Orange: nodes, hubs and links specific of chemokine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of chemokine_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner chemokine_off Avg Int. Strength chemokine_on Avg Int. Strength chemokine_off Num Of Links chemokine_on Num Of Links ConSurf
11x24 chemokine_off113.0825425
21x26 chemokine_off7.5150404
31x27 chemokine_off8.34755.815416
41x30 chemokine_off8.81253.315414
52x45 chemokine_off6.146.96333439
62x54 chemokine_off3.47254.6275416
7E1x50 chemokine_off7.438573.52667739
8E1x52 chemokine_off9.18752.20917437
93x29 chemokine_off6.1456.50125426
103x41 chemokine_off5.9482.7825525
113x45 chemokine_off4.7984.5515
123x50 chemokine_off5.41253.665439
13I2x57 chemokine_off6.1455.9575636
14E2x52 chemokine_off9.83254.69583435
15I3 chemokine_off3.555.01375424
166x32 chemokine_off2.29251.49833438
177x38 chemokine_off9.07257.54333435
187x43 chemokine_off3.64752.9925425
197x45 chemokine_off7.21258.9625439
20NT Shared18.161711.4479674
211x39 Shared5.118.1735557
222x42 Shared6.08754.686457
232x53 Shared7.9826.5585557
242x60 Shared8.9356.8647
253x32 Shared8.86.3375456
263x51 Shared6.076.5075548
27E2 Shared17.901412.048814153
286x44 Shared6.4655.83125649
296x48 Shared7.17.21042569
306x51 Shared8.1255.82313447
31E3 Shared6.354297.49528793
327x42 Shared7.16411.0662547
337x50 Shared5.973.74125449
34Lig Shared69.079461.906816180
351x43 chemokine_on4.925.71187246
361x47 chemokine_on3.0752.96125245
371x50 chemokine_on12.436.05249
382x46 chemokine_on6.9754.095249
392x57 chemokine_on3.9255.81063248
403x24 chemokine_on2.033335.37125345
413x33 chemokine_on7.355.80813245
423x36 chemokine_on9.386.45625147
433x37 chemokine_on7.016676.52313347
443x40 chemokine_on4.893334.3925347
453x42 chemokine_on4.186.19187247
463x56 chemokine_on10.983.5755256
47I2x52 chemokine_on02.6435055
484x50 chemokine_on7.134.9365359
494x61 chemokine_on10.325.97437344
505x47 chemokine_on8.216.3525148
515x54 chemokine_on6.273.94188247
525x58 chemokine_on8.466.669158
536x30 chemokine_on2.4652.6425247
546x58 chemokine_on8.143335.041355
557x49 chemokine_on7.195.07688349
567x53 chemokine_on17.495.06563149
578x50 chemokine_on03.259050
58E1 chemokine_on07.08040
   
Orange: nodes, hubs and links specific of chemokine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of chemokine_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner chemokine_off Recurrence chemokine_on Recurrence chemokine_off Hub1? chemokine_on Hub1? chemokine_off Hub2? chemokine_on Hub2? ConSurf1 ConSurf2
11x27 7x31 chemokine_off13.53920YesNoNoNo64
27x31 Lig chemokine_off22.71061.16098NoNoYesYes40
31x30 1x31 chemokine_off17.87870YesNoNoNo43
41x30 1x34 chemokine_off11.42920YesNoNoNo45
51x35 1x39 chemokine_off23.39991.01311NoNoYesYes67
61x39 2x60 chemokine_off22.64030YesYesYesYes77
72x60 Lig chemokine_off29.04773.87459YesYesYesYes70
81x39 7x39 chemokine_off11.3879.96923YesYesNoNo74
97x43 7x48 chemokine_off15.52260YesNoNoNo56
106x40 7x48 chemokine_off19.26430NoNoNoNo76
113x43 6x40 chemokine_off35.39880NoNoNoNo87
122x54 2x57 chemokine_off12.35050YesNoNoYes68
132x53 2x57 chemokine_off14.05965.67101YesYesNoYes78
142x53 2x60 chemokine_off34.65330YesYesYesYes77
151x50 7x50 chemokine_off55.64077.37351NoYesYesYes99
161x50 2x50 chemokine_off57.5968.27272NoYesNoNo99
177x45 7x46 chemokine_off61.46430YesNoNoNo99
183x35 7x45 chemokine_off47.72820NoNoYesNo89
196x48 7x45 chemokine_off21.85264.44409YesYesYesNo99
201x53 2x47 chemokine_off11.45731.29286NoNoNoNo89
212x40 2x43 chemokine_off11.45730NoNoNoNo88
222x43 7x49 chemokine_off15.81090NoNoNoYes89
233x49 I2x57 chemokine_off46.6243.87459NoNoYesNo86
242x42 3x49 chemokine_off51.77247.73719YesYesNoNo78
252x42 3x45 chemokine_off58.13761.94429YesYesYesNo75
263x45 4x49 chemokine_off68.53290YesNoNoNo57
273x41 4x49 chemokine_off69.96060YesNoNoNo57
283x40 3x41 chemokine_off86.48191.46871NoYesYesNo75
292x45 3x42 chemokine_off18.16712.28399YesNoNoYes97
302x45 4x50 chemokine_off11.42210.0259771YesNoNoYes99
313x28 Lig chemokine_off14.03850NoNoYesYes50
32E1x50 Lig chemokine_off12.88510YesNoYesYes90
33E1x49 E1x51 chemokine_off11.13380NoNoNoNo43
34E1x49 E2 chemokine_off12.84991.09903NoNoYesYes43
353x29 Lig chemokine_off16.65490YesNoYesYes60
366x48 6x52 chemokine_off12.47010YesYesNoNo98
373x41 3x44 chemokine_off11.72460YesNoNoNo57
383x51 3x52 chemokine_off13.53210YesYesNoNo85
393x52 I2x57 chemokine_off20.85380NoNoYesNo56
403x53 I2x57 chemokine_off15.36781.94429NoNoYesNo86
413x41 5x49 chemokine_off11.72460YesNoNoNo56
423x53 6x32 chemokine_off13.48290NoNoYesNo88
436x36 7x52 chemokine_off13.63060NoNoNoNo77
446x40 7x52 chemokine_off15.52264.64192NoNoNoNo77
456x58 Lig chemokine_off21.82441.33083NoYesYesYes50
466x61 7x26 chemokine_off11.21820NoNoNoNo31
476x61 7x30 chemokine_off13.03980NoNoNoNo35
486x58 7x30 chemokine_off16.64090NoYesNoNo55
491x31 1x35 chemokine_off16.26810NoNoNoNo36
501x39 7x42 chemokine_off18.82829.6615YesYesYesYes77
516x44 7x45 chemokine_off38.71150YesYesYesNo99
522x53 7x42 chemokine_off11.63316.96187YesYesYesYes77
537x38 7x42 Shared10.451514.0257YesNoYesYes57
547x38 Lig Shared80.80624.1947YesNoYesYes50
553x43 6x44 Shared38.753734.7194NoNoYesYes89
566x44 6x48 Shared76.649362.9886YesYesYesYes99
576x48 6x51 Shared98.930932.2476YesYesYesYes97
586x51 7x38 Shared10030.3653YesYesYesNo75
592x50 7x46 Shared59.537218.3499NoNoNoNo99
602x53 3x35 Shared47.67915.5623YesYesNoNo78
611x53 7x50 Shared13.70820.8856NoNoYesYes89
627x49 7x50 Shared39.492220.6318NoYesYesYes99
633x40 6x44 Shared90.814531.4084NoYesYesYes79
642x46 3x42 Shared20.375612.527NoYesNoYes97
652x46 7x49 Shared22.5713.1245NoYesNoYes99
66E2 Lig Shared38.092627.0682YesYesYesYes30
672x64 Lig chemokine_on010.3289NoNoYesYes50
682x53 3x32 chemokine_on1.8216325.5016YesYesYesYes76
693x32 Lig chemokine_on012.7008YesYesYesYes60
702x53 7x46 chemokine_on018.1141YesYesNoNo79
712x50 7x49 chemokine_on013.8518NoNoNoYes99
721x53 8x50 chemokine_on018.4178NoNoNoYes80
732x37 2x39 chemokine_on013.2044NoNoNoNo77
742x39 3x50 chemokine_on1.9693314.781NoNoYesNo79
753x50 5x58 chemokine_on047.4682YesNoNoYes98
763x47 5x58 chemokine_on033.0609NoNoNoYes98
773x47 5x54 chemokine_on3.9597766.5474NoNoNoYes97
785x54 6x44 chemokine_on0100NoYesYesYes79
793x36 3x40 chemokine_on030.9468NoYesNoYes77
803x33 3x36 chemokine_on054.9237NoYesNoYes57
813x33 Lig chemokine_on039.5952NoYesYesYes50
825x58 6x41 chemokine_on030.3953NoYesNoNo87
835x54 6x41 chemokine_on032.0698NoYesNoNo77
843x36 6x48 chemokine_on032.3156NoYesYesYes79
852x37 2x40 chemokine_on2.3139711.2801NoNoNoNo78
862x42 3x46 chemokine_on3.6995429.6539YesYesNoNo78
873x46 3x50 chemokine_on031.5382NoNoYesNo89
882x42 4x45 chemokine_on012.509YesYesNoNo75
892x46 3x43 chemokine_on018.8394NoYesNoNo98
90E1 E2 chemokine_on011.5019NoYesYesYes03
913x34 3x35 chemokine_on010.8245NoNoNoNo58
923x36 3x37 chemokine_on012.485NoYesNoYes77
933x37 4x56 chemokine_on3.650310.9364NoYesNoNo75
943x47 5x57 chemokine_on1.983438.5521NoNoNoNo96
953x51 5x57 chemokine_on032.1737YesYesNoNo86
963x51 3x55 chemokine_on4.0160417.6724YesYesNoNo87
973x54 5x64 chemokine_on016.0499NoNoNoNo84
983x55 5x64 chemokine_on2.0185717.041NoNoNoNo74
993x54 5x61 chemokine_on015.0548NoNoNoNo88
1004x41 4x45 chemokine_on010.5847NoNoNoNo35
1015x58 6x37 chemokine_on012.6848NoYesNoNo87
1025x65 6x31 chemokine_on011.0343NoNoNoNo85
1035x61 5x65 chemokine_on2.2225313.0525NoNoNoNo88
1043x43 7x53 chemokine_on015.864NoNoNoYes89
1057x49 7x53 chemokine_on011.2561NoYesNoYes99
1066x61 E3 chemokine_on014.3514NoNoYesYes33
1076x61 Lig chemokine_on015.4684NoNoYesYes30
1083x32 3x33 chemokine_on014.9189YesYesNoYes65

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
LigNTShared62.4330.571101
NTNTShared10.0918.0551111
1x24NTchemokine_off9.7501111
7x24NTShared7.283.640021
1x25NTShared9.331.450021
1x247x27chemokine_off9.301111
1x247x28chemokine_off7.2301112
1x24LigShared17.723.861110
1x277x28Shared12.265.8151022
1x277x31chemokine_off10.201021
1x277x32chemokine_off6.9901022
1x351x39Shared5.867.75250022
1x392x60chemokine_off3.8601121
1x397x42Shared5.1620.80751122
2x532x60chemokine_off6.0101121
2x533x32Shared5.166.0051121
2x537x42Shared11.797.86251122
2x563x28Shared4.763.14750021
2x59E1x52chemokine_off10.7201022
2x593x28Shared3.938.67251021
2x603x32Shared14.476.31111
2x607x38chemokine_off8.7201111
2x607x42chemokine_off8.0201112
2x60LigShared12.539.051110
2x63E1x50Shared4.473.39751111
2x63E2chemokine_off4.7601111
2x63Ligchemokine_off16.8601110
E1x49E2Shared21.41.8551021
E1x50E1x52chemokine_off17.0401112
3x25E1x50Shared3.923.2651121
E1x50E2chemokine_off4.901111
E1x50E2x50Shared14.373.91751112
E1x50Ligchemokine_off4.5601110
3x223x26chemokine_off4.201022
3x22E2Shared103.1651021
3x25E2x50Shared7.287.281122
3x28Ligchemokine_off4.4701010
3x294x61chemokine_off6.301012
3x294x65Shared8.787.831012
3x29E2x52chemokine_off5.6401012
3x29Ligchemokine_off3.8601010
3x323x36chemokine_off9.3801112
3x327x42chemokine_off6.1901112
3x334x61Shared11.569.54750112
4x60E2x52chemokine_off7.2100022
4x605x39chemokine_off7.2200021
4x61E2x52Shared13.13.3051022
4x64E2Shared14.248.661121
4x645x35Shared5.015.011122
E2E2Shared43.1534.311111
E2LigShared37.3240.861110
E2E2x51Shared11.895.261111
E2x51LigShared7.2812.85251110
E2E2x52Shared13.384.67751112
5x35E2Shared24.3110.881121
5x36E2chemokine_off6.3101021
5x39E2Shared10.323.61111
5x34E2chemokine_off5.4900021
6x516x55Shared6.046.2450022
6x517x38Shared13.475.33250021
6x587x34chemokine_off4.201111
6x58LigShared17.314.1651110
6x617x26chemokine_off5.0200112
E3E3Shared4.2115.13759122
7x26E3Shared17.826.819122
7x27LigShared21.7518.15251010
7x317x35chemokine_off8.3701012
7x31LigShared13.076.62251010
7x387x42Shared4.664.37251112
7x38LigShared9.4412.9251110
6x547x34Shared3.534.84250021
3x334x57chemokine_off3.1400112
6x617x30chemokine_off3.0700112
6x587x30chemokine_off2.9201112
3x21E1x50chemokine_off2.8100021
5x385x39chemokine_off2.6200021
2x593x24Shared2.447.291022
3x24E1x52Shared2.443.0451122
6x62LigShared2.433.610110
1x281x32chemokine_off1.6100022
1x352x64chemokine_off1.5800021
6x556x59chemokine_off1.5500122
5x365x40chemokine_off1.4301022
7x28NTchemokine_on05.731121
2x563x32chemokine_on03.82250021
3x25E2chemokine_on05.9051121
3x323x33chemokine_on05.381111
3x333x36chemokine_on03.2050112
4x65E2x50chemokine_on05.520022
4x65E2x52chemokine_on06.1050022
5x36E2x51chemokine_on06.9451021
5x32E2chemokine_on07.59250021
5x315x34chemokine_on04.83750122
5x315x35chemokine_on012.51250122
5x376x59chemokine_on03.430022
5x376x62chemokine_on04.34250021
5x406x55chemokine_on09.20750122
5x406x58chemokine_on010.4450121
5x406x59chemokine_on06.650122
6x586x62chemokine_on03.2751111
6x61E3chemokine_on04.26750112
7x34Ligchemokine_on05.540110
2x603x28chemokine_on06.67751111
2x603x29chemokine_on05.17251111
2x64Ligchemokine_on04.0850110
5x31E2chemokine_on04.41750121
6x586x59chemokine_on03.9051112
2x63E1chemokine_on03.9351112
2x633x24chemokine_on04.791112
E1E2chemokine_on011.730121
3x24E1chemokine_on06.361122
3x26E2chemokine_on03.510021
3x32Ligchemokine_on010.181110
3x33Ligchemokine_on05.10110
4x615x39chemokine_on04.6751021
5x39Ligchemokine_on08.971110
6x556x58chemokine_on03.4150121
1x322x64chemokine_on02.950021
6x61Ligchemokine_on02.8750110
7x32NTchemokine_on02.6351121
7x30E3chemokine_on02.4350022
1x241x28chemokine_on02.3051112
2x647x35chemokine_on02.0750112
3x21E1x52chemokine_on00.7550022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
chemokine_off cxcr_off
chemokine_on cxcr_on
cx3cr_on
Network Difference
Value chemokine_off chemokine_on
Imin 3.68 3.105
Number of Linked Nodes 232 277
Number of Specific Nodes 1 (0.43%) 46  (16.61%)
Number of Shared Nodes 231 (99.57%) 231  (83.39%)
Number of Links 270 319
Number of Specific Links 147 (54.44%) 196  (61.44%)
Number of Shared Links 123 (45.56%) 123  (38.56%)
Number of Hubs 34 39
Number of Specific Hubs 19 (55.88%) 24  (61.54%)
Number of Shared Hubs 15 (44.12%) 15  (38.46%)
Average % Shared Neighbours (Jaccard) 25.84
Average % Shared Neighbours (Otsuka) 33.78
Average % Shared Neighbours (Overlap Coefficient) 41.65
Average % Shared Cliques (k3-6) 52.27
Graphlets Similarity 0.579325
Paths Difference
Value chemokine_off chemokine_on
Number Of Nodes in MetaPath 63 51
Specific Nodes in MetaPath 41 (65.08%) 29  (56.86%)
Shared Nodes in MetaPath 231 (99.57%) 231  (99.57%)
Number Of Links MetaPath 66 56
Specific Links in MetaPath 52 (78.79%) 42  (75.00%)
Shared Links in MetaPath 123 (45.56%) 123  (45.56%)
Number of Shortest Paths 35141 87396
Length Of Smallest Path 3 3
Average Path Length 12.0647 12.6568
Length of Longest Path 26 28
Minimum Path Strength 1.39 0.345
Average Path Strength 7.65782 5.96673
Maximum Path Strength 41.3533 27.4367
Minimum Path Correlation 0.71 0.7
Average Path Correlation 0.95496 0.936184
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 6.25 4.54545
Average % Of Corr. Nodes 61.3693 49.811
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 47.2684 49.8875
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download chemokine_off_on.zip<



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