Orange: nodes, hubs and links specific of chemokine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of chemokine_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner chemokine_off Avg Int. Strength chemokine_on Avg Int. Strength chemokine_off Num Of Links chemokine_on Num Of Links ConSurf
11x60 chemokine_off00425
22x40 chemokine_off00438
32x44 chemokine_off00436
42x60 chemokine_off1000536
53x33 chemokine_off00435
63x41 chemokine_off00425
73x43 chemokine_off00428
83x50 chemokine_off00429
93x52 chemokine_off00415
104x42 chemokine_off00427
114x50 chemokine_off2525539
12E2x52 chemokine_off5012.5434
135x35 chemokine_off250433
145x60 chemokine_off00434
155x61 chemokine_off00538
166x44 chemokine_off10025639
176x51 chemokine_off10037.5436
188x48 chemokine_off00425
198x54 chemokine_off00437
201x35 Shared00446
211x39 Shared66.666725757
222x42 Shared087.5567
232x53 Shared2531.6667446
24E1x50 Shared10087.5758
25E1x52 Shared025467
263x32 Shared5033.75546
273x37 Shared7555547
283x51 Shared41.666743.75648
29I2x57 Shared00447
30E2 Shared10010014133
315x50 Shared00548
325x58 Shared0100478
336x48 Shared10087.5559
347x42 Shared7582.5547
357x53 Shared095569
368x50 Shared064.1667458
37Lig Shared10010023190
38E3 Shared2525570
39NT chemokine_on083.75350
401x30 chemokine_on00244
411x50 chemokine_on00349
421x57 chemokine_on00247
431x59 chemokine_on00244
442x38 chemokine_on00346
453x49 chemokine_on8.3333315348
463x56 chemokine_on00246
47I2x52 chemokine_on00254
484x41 chemokine_on00144
495x47 chemokine_on00148
506x30 chemokine_on00245
516x40 chemokine_on250248
526x49 chemokine_on00245
537x43 chemokine_on00145
547x45 chemokine_on040349
557x49 chemokine_on025149
567x52 chemokine_on00348
578x53 chemokine_on00245
   
Orange: nodes, hubs and links specific of chemokine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of chemokine_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner chemokine_off Recurrence chemokine_on Recurrence chemokine_off Hub1? chemokine_on Hub1? chemokine_off Hub2? chemokine_on Hub2? ConSurf1 ConSurf2
11x50 2x51 chemokine_off12.09591.17236NoYesNoNo97
21x51 2x51 chemokine_off10.09390NoNoNoNo47
37x42 Lig chemokine_off23.05650YesYesYesYes70
46x48 6x51 chemokine_off78.6740YesYesYesNo96
56x44 6x48 chemokine_off1008.50134YesNoYesYes99
63x40 6x44 chemokine_off59.0380NoNoYesNo89
73x40 5x50 chemokine_off58.22040NoNoYesYes88
83x41 5x50 chemokine_off54.04590YesNoYesYes58
93x41 4x49 chemokine_off50.60237.17311YesNoNoNo57
102x38 2x42 chemokine_off32.12776.58693NoYesYesYes67
112x38 I2x57 chemokine_off28.96724.41839NoYesYesYes67
123x53 I2x57 chemokine_off27.27432.22614NoNoYesYes87
133x50 3x53 chemokine_off26.4770YesNoNoNo98
142x39 3x50 chemokine_off17.40570NoNoYesNo79
152x37 2x39 chemokine_off16.34260NoNoNoNo77
162x37 2x40 chemokine_off11.94571.17236NoNoYesNo78
171x53 7x53 chemokine_off33.12440NoNoYesYes99
187x53 8x50 chemokine_off26.21410YesYesYesYes98
191x56 8x50 chemokine_off18.76931.17236NoNoYesYes78
202x60 Lig chemokine_off10.14881.18592YesNoYesYes60
213x32 3x33 chemokine_off23.82789.98882YesYesYesNo65
223x33 3x37 chemokine_off26.88430YesNoYesYes57
233x36 3x37 chemokine_off22.81386.27859NoNoYesYes77
243x36 6x48 chemokine_off26.39617.30187NoNoYesYes79
253x43 6x44 chemokine_off36.36860YesNoYesNo89
266x44 6x45 chemokine_off30.5070YesNoNoNo95
276x41 6x45 chemokine_off27.8550NoNoNoNo85
283x43 6x41 chemokine_off28.54540YesNoNoNo88
295x54 6x41 chemokine_off54.33480NoNoNoNo88
303x47 5x54 chemokine_off52.62461.49087NoNoNoNo98
313x51 5x61 chemokine_off28.30850YesYesYesNo88
323x51 5x60 chemokine_off10.23837.17989YesYesYesNo84
335x40 Lig chemokine_off15.41240NoNoYesYes50
345x40 6x59 chemokine_off14.68153.62552NoNoNoNo55
356x59 6x60 chemokine_off13.69350NoNoNoNo54
366x60 E3 chemokine_off10.67462.36167NoNoYesYes40
373x32 Lig Shared27.141452.0178YesYesYesYes60
382x53 3x32 Shared42.042559.9803YesYesYesYes66
392x53 7x46 Shared65.012395.9103YesYesNoNo68
402x50 7x46 Shared59.508996.1508NoNoNoNo98
411x50 2x50 Shared55.811144.6786NoYesNoNo99
422x53 7x42 Shared26.60735.791YesYesYesYes67
431x50 7x50 Shared42.686737.414NoYesNoNo99
441x53 7x50 Shared36.975334.578NoNoNoNo99
457x38 Lig Shared77.249710.392NoNoYesYes50
466x51 7x38 Shared77.229525.0398YesNoNoNo65
473x45 4x49 Shared43.382916.3623NoNoNoNo67
482x42 3x45 Shared40.765617.4804YesYesNoNo76
49E1x50 E1x52 Shared11.347721.6481YesYesYesYes87
50E2 Lig Shared16.114428.3129YesYesYesYes30
513x47 5x58 Shared50.720828.0215NoNoYesYes98
525x58 5x61 Shared39.633122.9153YesYesYesNo88
531x35 1x39 chemokine_on1.4126812.9909YesYesYesYes67
541x39 7x42 chemokine_on3.4464816.6503YesYesYesYes77
557x38 7x42 chemokine_on021.5769NoNoYesYes57
561x53 8x50 chemokine_on032.6466NoNoYesYes98
571x57 8x50 chemokine_on022.7561NoYesYesYes78
588x53 I1x48 chemokine_on012.2116NoYesNoNo56
59I1x48 I1x51 chemokine_on014.2581NoNoNoNo66
602x40 I1x51 chemokine_on1.172915.3458YesNoNoNo86
611x57 2x40 chemokine_on8.7794317.5008NoYesYesNo78
622x42 3x46 chemokine_on2.0771340.4263YesYesNoNo79
633x46 7x53 chemokine_on041.2496NoNoYesYes99
647x49 7x53 chemokine_on088.5711NoYesYesYes99
652x50 7x49 chemokine_on2.02802100NoNoNoYes99
662x63 E1x50 chemokine_on5.607413.4754NoNoYesYes48
672x63 Lig chemokine_on6.2689614.3123NoNoYesYes40
68E1x50 E2 chemokine_on6.2602914.3632YesYesYesYes83
696x48 7x45 chemokine_on3.0824815.0408YesYesNoYes99
707x45 7x49 chemokine_on022.0242NoYesNoYes99
713x50 5x58 chemokine_on032.6636YesNoYesYes98
723x50 7x53 chemokine_on033.2159YesNoYesYes99
735x58 6x40 chemokine_on034.5441YesYesNoYes88
746x40 7x53 chemokine_on039.0438NoYesYesYes89
753x47 5x57 chemokine_on027.8183NoNoNoNo97
763x51 5x57 chemokine_on2.0569124.4028YesYesNoNo87
773x51 3x56 chemokine_on2.0511312.1878YesYesNoYes86
786x51 6x55 chemokine_on1.0775710.5479YesNoNoNo66
796x50 7x37 chemokine_on4.9198310.7004NoNoNoNo97
806x51 7x37 chemokine_on6.3700714.1463YesNoNoNo67
815x58 6x37 chemokine_on011.0968YesYesNoNo87
82E3 Lig chemokine_on010.2565YesYesYesYes00
831x30 7x32 chemokine_on010.9748NoYesNoNo41
841x31 7x32 chemokine_on013.184NoNoNoNo31
851x31 1x35 chemokine_on014.3564NoNoYesYes36
865x65 6x30 chemokine_on015.732NoNoNoYes85
875x61 5x65 chemokine_on1.5629119.3372YesNoNoNo88
886x30 6x31 chemokine_on010.5411NoYesNoNo54

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x277x32Shared4.52252.82350022
1x351x39Shared10.45337.577171011
1x35Ligchemokine_off4.947501010
1x392x57Shared3.77754.810871112
1x397x39Shared5.481672.110331112
1x397x42Shared8.046675.727921111
1x39Ligchemokine_off4.8301110
2x533x32Shared6.4958.377671021
2x537x42Shared7.495.822921021
2x562x60Shared5.761673.320130021
2x60E1x50chemokine_off4.9201112
2x603x32Shared3.858336.438371111
2x607x42chemokine_off4.9501111
2x60LigShared19.599213.22881110
2x63E1x50Shared7.865837.078581112
E1x49E2Shared12.73674.303581021
E1x50E2Shared4.920834.715751121
3x223x26Shared4.974173.008621122
3x22E2Shared10.6556.008131121
3x26E2chemokine_off4.102501021
3x294x65Shared8.536679.406831012
3x29Ligchemokine_off6.1141701010
3x323x33Shared4.54254.669461112
3x327x42chemokine_off5.3191701111
3x32LigShared8.174177.037041110
3x334x61Shared16.21427.105080022
4x615x39chemokine_off4.542500022
4x64E2Shared17.704210.47351121
4x645x35Shared9.019173.749581122
4x65E2x52Shared4.99255.895210021
E2E2Shared52.617547.70581111
E2E2x52Shared8.1254.888461111
5x35E2Shared10.03089.610371121
5x36E2chemokine_off6.2141700111
5x335x37chemokine_off5.43500022
5x376x60chemokine_off3.927500022
5x406x59Shared9.37756.231121012
6x516x55Shared8.939178.2160022
6x517x38Shared7.689177.310130021
6x547x34chemokine_off3.822500021
6x587x34chemokine_off3.6666700021
6x596x60chemokine_off4.972500022
7x35LigShared12.03673.661330110
7x38LigShared10.71177.105251110
7x42Ligchemokine_off9.17501110
E2x52Ligchemokine_off6.98501110
E2LigShared27.859242.01311110
5x40Ligchemokine_off3.84501010
2x63LigShared4.871673.719081110
E2x51LigShared6.743338.900831110
1x24Ligchemokine_off3.6891701010
7x31LigShared4.291673.774420110
7x34LigShared3.795834.936541010
LigNTShared16.705845.15841101
7x27LigShared3.601678.508120010
5x32LigShared5.94254.020110
1x241x27chemokine_off5.1333301012
2x63E2Shared4.070833.662421111
E2E2x51Shared7.93257.775081111
6x61E3Shared4.939174.778790021
6x62E3chemokine_off5.07500111
7x26E3Shared5.244175.248290121
4x61E2x52Shared4.11755.0310021
6x60E3Shared5.19254.594420121
6x636x64chemokine_off3.37500022
6x626x63chemokine_off3.207500112
7x24NTShared3.033335.770920021
1x31Ligchemokine_off2.7300010
1x392x61Shared2.669173.384581112
1x352x64Shared2.495833.456171012
1x247x28chemokine_off2.3066701012
5x31E2chemokine_off2.23500021
1x381x39chemokine_off2.1533300021
1x341x35chemokine_off1.6466700021
1x25NTchemokine_off1.1200021
1x28LigShared1.05753.40850110
6x65E3chemokine_off0.42500021
E3Ligchemokine_on03.469420110
NTNTchemokine_on017.98231111
1x357x35chemokine_on03.698711011
5x39E2chemokine_on04.758380121
5x32E2chemokine_on03.796710111
5x406x55chemokine_on05.26851012
5x406x58chemokine_on03.74751012
7x387x42chemokine_on06.375211111
2x577x42chemokine_on05.539040121
5x36Ligchemokine_on04.342370110
6x62Ligchemokine_on03.484540110
E3E3chemokine_on03.442870111
5x36E2x51chemokine_on03.631830111
7x28NTchemokine_on03.333920121
1x387x39chemokine_on03.040750022
5x376x62chemokine_on03.039670021
1x317x32chemokine_on03.01250012
1x311x35chemokine_on02.817120011
1x247x31chemokine_on02.59751011
6x64E3chemokine_on02.530460021
5x376x63chemokine_on02.25150022
5x336x62chemokine_on01.952750021
1x251x28chemokine_on00.7420021
2x67Ligchemokine_on00.7170010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
chemokine_off ccr_off
cxcr_off
chemokine_on ccr_on
cxcr_on
Network Difference
Value chemokine_off chemokine_on
Imin 3.39917 3.36363
Number of Linked Nodes 278 285
Number of Specific Nodes 1 (0.36%) 8  (2.81%)
Number of Shared Nodes 277 (99.64%) 277  (97.19%)
Number of Links 304 309
Number of Specific Links 122 (40.13%) 127  (41.10%)
Number of Shared Links 182 (59.87%) 182  (58.90%)
Number of Hubs 38 38
Number of Specific Hubs 19 (50.00%) 19  (50.00%)
Number of Shared Hubs 19 (50.00%) 19  (50.00%)
Average % Shared Neighbours (Jaccard) 45.88
Average % Shared Neighbours (Otsuka) 55.20
Average % Shared Neighbours (Overlap Coefficient) 66.93
Average % Shared Cliques (k3-6) 59.00
Graphlets Similarity 0.581353
Paths Difference
Value chemokine_off chemokine_on
Number Of Nodes in MetaPath 51 50
Specific Nodes in MetaPath 24 (47.06%) 23  (46.00%)
Shared Nodes in MetaPath 277 (99.64%) 277  (99.64%)
Number Of Links MetaPath 52 52
Specific Links in MetaPath 36 (69.23%) 36  (69.23%)
Shared Links in MetaPath 182 (59.87%) 182  (59.87%)
Number of Shortest Paths 62688 55639
Length Of Smallest Path 3 3
Average Path Length 14.6356 12.4615
Length of Longest Path 36 26
Minimum Path Strength 0.949722 0.652729
Average Path Strength 5.94368 5.60428
Maximum Path Strength 22.7817 32.5483
Minimum Path Correlation 0.7 0.704708
Average Path Correlation 0.906068 0.931951
Maximum Path Correlation 0.983333 0.987458
Minimum % Of Corr. Nodes 3.22581 4.54545
Average % Of Corr. Nodes 41.0465 53.3907
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 45.7119 45.1662
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download chemokine_off_on.zip<



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