Orange: nodes, hubs and links specific of class-b1_on network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of class-b2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner class-b1_on Avg Int. Strength class-b2_on Avg Int. Strength class-b1_on Num Of Links class-b2_on Num Of Links ConSurf
1Lig class-b1_on1006.666673320
21x36 class-b1_on200525
31x39 class-b1_on39.58330617
41x43 class-b1_on72.791720537
52x38 class-b1_on010437
62x50 class-b1_on56.1250638
72x57 class-b1_on200437
83x32 class-b1_on250436
93x35 class-b1_on1020425
103x44 class-b1_on100428
113x46 class-b1_on84.166726.6667439
123x49 class-b1_on59.166713.3333538
134x60 class-b1_on430418
144x64 class-b1_on33.33330428
155x41 class-b1_on44.3750416
165x69 class-b1_on00428
176x29 class-b1_on00535
186x44 class-b1_on360429
196x47 class-b1_on3010428
207x45 class-b1_on030439
218x58 class-b1_on00415
22NT Shared63.593.33336235
231x50 Shared020449
241x60 Shared026.6667557
252x40 Shared033.3333449
26E1 Shared73.3333401063
273x33 Shared14.166766.6667477
283x34 Shared1040549
293x42 Shared9096.6667469
30I2 Shared4020867
31E2 Shared981008175
32E2x51 Shared3083.3333558
335x40 Shared043.3333444
345x58 Shared400459
356x48 Shared68.3333100558
36E3 Shared4040844
37I1x50 class-b2_on00359
382x43 class-b2_on033.3333349
393x24 class-b2_on00243
403x37 class-b2_on013.3333146
414x42 class-b2_on020245
424x50 class-b2_on066.6667349
434x53 class-b2_on00359
44E2x52 class-b2_on010355
45I3 class-b2_on020350
466x33 class-b2_on00259
477x35 class-b2_on013.3333346
487x37 class-b2_on12.333373.3333348
497x50 class-b2_on053.3333258
507x52 class-b2_on013.3333348
518x54 class-b2_on020145
   
Orange: nodes, hubs and links specific of class-b1_on network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of class-b2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner class-b1_on Recurrence class-b2_on Recurrence class-b1_on Hub1? class-b2_on Hub1? class-b1_on Hub2? class-b2_on Hub2? ConSurf1 ConSurf2
11x43 2x57 class-b1_on19.08940YesNoYesNo77
22x53 3x36 class-b1_on67.12641.96689NoNoNoNo86
33x36 Lig class-b1_on74.06010NoNoYesNo60
41x50 7x50 class-b1_on14.38370YesYesNoYes98
52x50 3x39 class-b1_on96.56261.93859YesNoNoNo89
62x53 3x39 class-b1_on96.70120NoNoNoNo89
72x39 2x40 class-b1_on35.39620NoNoYesYes99
82x46 3x46 class-b1_on99.68470NoNoYesNo99
92x46 2x50 class-b1_on1000NoNoYesNo98
108x49 I1x50 class-b1_on17.07613.05646NoNoNoYes99
112x42 3x49 class-b1_on21.42830NoNoYesNo88
122x43 7x53 class-b1_on25.16720NoYesNoNo98
133x34 3x35 class-b1_on33.17869.1057YesYesYesNo95
142x56 3x35 class-b1_on42.09780NoNoYesNo65
152x56 3x32 class-b1_on43.56017.84633NoNoYesNo66
163x32 Lig class-b1_on27.60660YesNoYesNo60
17E2 Lig class-b1_on20.50664.07528YesYesYesNo50
18E2 E2x51 class-b1_on10.99830YesYesYesYes58
193x33 Lig class-b1_on12.32540YesYesYesNo70
203x44 5x54 class-b1_on13.60410YesNoNoNo89
216x43 6x44 class-b1_on33.84390NoNoYesNo99
223x46 6x43 class-b1_on47.95384.81109YesNoNoNo99
233x49 I2 class-b1_on11.1820YesNoYesYes87
247x52 7x53 class-b1_on41.41520NoYesNoNo88
256x43 7x53 class-b1_on24.91423.79935NoNoNoNo98
268x47 8x49 class-b1_on15.91530NoNoNoNo99
274x64 5x40 class-b1_on17.5890YesNoYesYes84
286x32 6x35 class-b1_on34.22160NoNoNoNo88
296x35 6x39 class-b1_on36.09620NoNoNoNo88
306x39 7x52 class-b1_on37.66941.35843NoNoNoYes88
318x55 8x58 class-b1_on10.00730NoNoYesNo65
328x51 8x55 class-b1_on11.20273.79935NoNoNoNo76
338x48 8x51 class-b1_on12.39136.03509NoNoNoNo67
348x47 8x48 class-b1_on13.57290NoNoNoNo96
355x69 6x29 class-b1_on21.42835.30635YesNoYesNo85
365x69 6x32 class-b1_on32.33310YesNoNoNo88
376x29 I3 class-b1_on10.32610YesNoNoYes50
381x43 2x53 class-b1_on30.63170YesNoNoNo78
392x57 3x32 class-b1_on16.96185.39125YesNoYesNo76
401x49 7x50 Shared13.222922.7819NoNoNoYes78
411x50 2x50 Shared18.957740.1585YesYesYesNo98
421x49 7x47 Shared12.055221.0202NoNoNoNo77
432x39 2x43 Shared36.432314.0158NoNoNoYes99
442x43 3x46 Shared50.573557.1176NoYesYesNo99
451x60 I1x50 Shared10.714234.4205YesYesNoYes79
462x40 I1x50 Shared27.949741.7292YesYesNoYes99
472x42 3x46 Shared22.533763.372NoNoYesNo89
483x34 4x50 Shared12.997726.836YesYesNoYes99
493x34 4x53 Shared12.997726.6874YesYesNoYes99
505x54 6x44 Shared14.799536.1752NoNoYesNo99
515x58 6x44 Shared18.126134.4347YesYesYesNo99
521x35 NT class-b2_on011.016NoNoYesYes65
531x43 NT class-b2_on011.3273YesNoYesYes75
546x48 NT class-b2_on093.314YesYesYesYes85
556x48 7x45 class-b2_on5.84566100YesYesYesNo89
562x50 7x45 class-b2_on8.901943.3281YesNoYesNo89
571x50 2x47 class-b2_on1.2335833.6494YesYesNoNo98
581x53 2x47 class-b2_on031.9867NoNoNoNo98
591x53 7x50 class-b2_on029.0293NoNoNoYes98
60E2 NT class-b2_on045.9955YesYesYesYes55
613x33 E2 class-b2_on040.5405YesYesYesYes75
623x33 3x37 class-b2_on045.9389YesYesNoYes76
633x37 4x53 class-b2_on1.6459346.4341NoYesNoYes69
643x43 7x45 class-b2_on1.1053792.1041NoNoYesNo99
652x46 3x43 class-b2_on091.2127NoNoNoNo99
662x46 3x42 class-b2_on090.8306NoNoYesYes99
672x42 3x42 class-b2_on065.0064NoNoYesYes89
681x57 2x43 class-b2_on055.8724NoNoNoYes89
691x57 2x40 class-b2_on6.2164350.8985NoNoYesYes89
701x60 8x53 class-b2_on6.2164316.2799YesYesNoNo78
713x42 3x45 class-b2_on3.288457.535YesYesNoNo98
723x45 4x46 class-b2_on052.1721NoNoNoNo87
734x42 4x46 class-b2_on051.2735NoYesNoNo57
742x38 4x42 class-b2_on020.5604YesNoNoYes75
752x39 3x49 class-b2_on012.2471NoNoYesNo98
762x38 3x49 class-b2_on6.8817411.7023YesNoYesNo78
772x38 4x43 class-b2_on4.9031510.3085YesNoNoNo76
783x38 4x53 class-b2_on021.1688NoNoNoYes89
793x38 4x50 class-b2_on1.6459321.2113NoNoNoYes89
803x42 4x50 class-b2_on9.7889746.5261YesYesNoYes99
812x57 NT class-b2_on023.6663YesNoYesYes75
822x57 E1 class-b2_on017.9638YesNoYesYes73
833x40 6x48 class-b2_on8.3336256.6436NoNoYesYes88
843x40 5x47 class-b2_on1.1088411.5325NoNoNoNo87
853x40 5x50 class-b2_on045.8964NoNoNoNo87
864x42 I2 class-b2_on6.8574836.1893NoYesYesYes57
873x56 I2 class-b2_on1.2335826.4044NoNoYesYes57
883x51 3x56 class-b2_on025.0177NoNoNoNo85
893x51 5x57 class-b2_on6.2857319.3222NoNoNoNo88
903x50 5x57 class-b2_on017.8152NoNoNoNo98
913x50 5x61 class-b2_on1.2682415.6644NoNoNoNo99
924x64 E2 class-b2_on015.5936YesNoYesYes85
935x50 5x54 class-b2_on039.4722NoNoNoNo79
945x58 5x62 class-b2_on2.5330122.223YesYesNoNo97
957x47 7x51 class-b2_on7.3148817.4544NoNoNoNo76
967x51 7x52 class-b2_on015.6502NoNoNoYes68
977x42 NT class-b2_on015.1054NoNoYesYes95
981x42 7x42 class-b2_on013.5135NoNoNoNo89
996x48 7x41 class-b2_on1.1088414.6314YesYesNoNo86
1006x47 7x41 class-b2_on018.0275YesNoNoNo86
1016x47 7x40 class-b2_on3.4166115.3743YesNoNoNo86
1026x50 7x40 class-b2_on010.0255NoNoNoNo66
1035x62 6x33 class-b2_on019.117NoNoNoYes79
1043x54 5x61 class-b2_on6.0639714.1432NoNoNoNo89
1053x54 5x64 class-b2_on4.8199911.957NoNoNoNo89
1068x53 8x56 class-b2_on3.7492612.6574NoNoNoNo87
1078x52 8x56 class-b2_on1.2543710.4641NoNoNoNo47
1083x21 E1 class-b2_on0.82816511.7164NoNoYesYes03
1093x21 3x24 class-b2_on010.4146NoNoNoYes03
1104x63 4x64 class-b2_on012.5018NoNoYesNo48

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x33Ligclass-b1_on5.7730501110
3x36Ligclass-b1_on8.7345701110
5x41Ligclass-b1_on5.984501010
7x34Ligclass-b1_on7.0440300110
7x37Ligclass-b1_on7.7352401110
2x57Ligclass-b1_on4.3563101110
3x32Ligclass-b1_on7.9032901010
7x38Ligclass-b1_on9.5599101110
E2LigShared16.73581.8471110
E3Ligclass-b1_on4.307801110
7x30Ligclass-b1_on4.2687900010
1x32Ligclass-b1_on14.981300010
1x36Ligclass-b1_on5.6438501110
1x39Ligclass-b1_on4.5801010
2x60Ligclass-b1_on6.0790601110
E2x52Ligclass-b1_on10.49601110
1x29Ligclass-b1_on7.6466901010
LigNTclass-b1_on77.528401101
E1Ligclass-b1_on19.761401110
NTNTShared427.27820.44931111
E1NTclass-b1_on8.2762501111
1x357x38class-b1_on5.1188300121
1x361x39class-b1_on3.9580401111
1x362x61class-b1_on4.659401112
1x391x43class-b1_on4.2714101012
1x392x61class-b1_on4.1533201012
1x397x38class-b1_on4.5409501011
1x397x42class-b1_on5.4874701012
1x432x53class-b1_on4.5552401122
1x432x57class-b1_on11.003701121
1x437x42class-b1_on7.0144101122
2x533x36Shared7.21095.959330021
2x572x61class-b1_on4.7526301112
2x603x32class-b1_on8.7233201111
E1E1Shared19.27018.242671111
3x26E2Shared6.46672.8821021
3x26E2x51class-b1_on23.758501022
3x334x60class-b1_on6.5285801112
3x335x43Shared7.533174.601671112
3x363x40class-b1_on4.3211301112
3x406x48Shared10.653514.09770022
4x604x64class-b1_on9.3942701022
4x605x421class-b1_on4.0434601022
4x605x43class-b1_on9.9449101022
4x644x68class-b1_on4.9151600122
4x64E2x51class-b1_on17.806700122
4x68E2class-b1_on11.062101021
E2E2x51class-b1_on4.9627701112
E2E2Shared12.387239.6491111
5x41E2class-b1_on7.8419101011
5x415x43class-b1_on4.1046901012
5x415x44Shared7.664046.142331011
5x425x44class-b1_on6.756600021
6x487x41Shared5.1047320.18933122
6x517x33class-b1_on6.2662501022
6x517x37Shared4.500754.970331021
E3E3Shared5.550995.903671111
7x337x37class-b1_on7.9859601121
2x573x32Shared4.98983.670331111
E1E2class-b1_on6.5231901111
4x645x40class-b1_on4.3197300122
1x291x33class-b1_on4.0838901012
5x44Ligclass-b1_on9.5236301110
1x25Ligclass-b1_on4.4058700010
2x563x32Shared3.596674.028670021
1x361x40Shared3.563086.014331112
3x293x33class-b1_on3.3160900021
5x516x48class-b1_on3.2136200022
2x64E2x52class-b1_on3.1939500021
E2x50E2x52class-b1_on3.1749700121
2x603x28Shared3.136873.860331112
7x29E3class-b1_on3.1209300021
1x28Ligclass-b1_on2.9127300010
2x65Ligclass-b1_on2.7629900010
4x65E2x51class-b1_on2.716300022
5x375x40class-b1_on2.660400012
3x304x61class-b1_on2.4537500022
6x54E3class-b1_on2.4399100021
4x61E2x51class-b1_on2.3834400022
1x24NTclass-b1_on2.346501021
6x53Ligclass-b1_on2.339500010
5x395x42class-b1_on2.3326800122
5x486x52Shared2.116583.3210021
2x68Ligclass-b1_on2.116500010
1x21Ligclass-b1_on2.105800010
6x52Ligclass-b1_on2.06801010
3x24E1class-b1_on2.0269801021
4x685x38class-b1_on1.99801022
1x26Ligclass-b1_on1.7078300010
2x633x28class-b1_on1.6669100022
2x67E1class-b1_on1.5344200021
1x362x62class-b1_on1.32801112
1x22Ligclass-b1_on1.0940300010
2x593x28class-b1_on0.99222900022
7x27E3class-b1_on0.76832500021
1x23Ligclass-b1_on0.606400010
6x55E3class-b1_on0.55985400121
6x56Ligclass-b1_on0.48183300010
7x28E3class-b1_on0.43800021
1x19NTclass-b1_on0.43500021
2x66E1Shared0.1688331.046670021
3x21E1Shared0.1643331.757330121
2x69E1class-b1_on0.074812500021
1x402x61class-b2_on03.8510022
3x29E2class-b2_on05.683670021
3x30E2class-b2_on05.922330021
3x32E2x51class-b2_on05.300671012
3x333x37class-b2_on05.699671112
3x334x57class-b2_on04.349671112
3x33E2class-b2_on06.8241111
3x33E2x52class-b2_on04.3441111
4x60E2class-b2_on04.148671021
4x61E2class-b2_on03.828670021
4x64E2class-b2_on09.8680121
5x39E2class-b2_on010.83870121
E2E2x52class-b2_on04.562331111
5x40E2x51class-b2_on04.3260122
5x43E2x51class-b2_on05.1891022
5x39E2x52class-b2_on04.9150121
5x40E2x52class-b2_on04.175330121
5x405x44class-b2_on03.4640121
6x487x37class-b2_on05.9143121
6x537x33class-b2_on06.443670012
7x377x41class-b2_on014.33771112
1x32NTclass-b2_on07.855670011
1x36NTclass-b2_on04.643671111
1x39NTclass-b2_on06.962331011
2x57NTclass-b2_on08.841331111
E2NTclass-b2_on014.64471111
1x35NTclass-b2_on05.045670121
1x43NTclass-b2_on03.801331121
6x48NTclass-b2_on07.883333121
7x37NTclass-b2_on08.494331111
7x42NTclass-b2_on04.538331121
7x34NTclass-b2_on08.286330111
E2x51NTclass-b2_on09.0361121
3x36NTclass-b2_on08.1171111
5x44NTclass-b2_on05.3281111
5x40NTclass-b2_on03.342330121
E3NTclass-b2_on08.605671111
1x30NTclass-b2_on03.330670021
E2x51E2x52class-b2_on010.4841121
2x57E1class-b2_on03.852671111
1x29E2class-b2_on04.2481011
7x307x33class-b2_on03.212670012
3x335x42class-b2_on02.626671112
7x38NTclass-b2_on02.5791111
E1E2x50class-b2_on02.499331112
7x33E3class-b2_on02.469671121
5x38E2class-b2_on02.2820021
2x60E2class-b2_on02.159671111
6x547x34class-b2_on02.0740021
3x213x24class-b2_on02.0410122
1x387x38class-b2_on01.933330021
6x55NTclass-b2_on01.8520121
2x592x60class-b2_on01.709330021
6x577x30class-b2_on01.705330021
1x28NTclass-b2_on01.5720011
5x516x52class-b2_on01.3930021
2x633x24class-b2_on01.2980022
3x335x421class-b2_on01.242671112
4x65E2class-b2_on00.9286670021
5x37Ligclass-b2_on00.7230010
6x556x56class-b2_on00.70121
2x612x62class-b2_on00.4941022
6x58NTclass-b2_on00.4606670021
2x632x65class-b2_on00.4283330021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
class-b1_on glucagon_on
vip-pacap_on
pth_on
crf_on
calcitonin_on
class-b2_on adgrg_on
adgrf_on
adgrl_on
adgre_on
adgrd_on
Network Difference
Value class-b1_on class-b2_on
Imin 3.73973 3.28
Number of Linked Nodes 276 262
Number of Specific Nodes 26 (9.42%) 12  (4.58%)
Number of Shared Nodes 250 (90.58%) 250  (95.42%)
Number of Links 304 284
Number of Specific Links 181 (59.54%) 161  (56.69%)
Number of Shared Links 123 (40.46%) 123  (43.31%)
Number of Hubs 36 30
Number of Specific Hubs 21 (58.33%) 15  (50.00%)
Number of Shared Hubs 15 (41.67%) 15  (50.00%)
Average % Shared Neighbours (Jaccard) 29.03
Average % Shared Neighbours (Otsuka) 37.31
Average % Shared Neighbours (Overlap Coefficient) 46.06
Average % Shared Cliques (k3-6) 75.00
Graphlets Similarity 0.610364
Paths Difference
Value class-b1_on class-b2_on
Number Of Nodes in MetaPath 51 69
Specific Nodes in MetaPath 24 (47.06%) 42  (60.87%)
Shared Nodes in MetaPath 250 (90.58%) 250  (90.58%)
Number Of Links MetaPath 51 71
Specific Links in MetaPath 39 (76.47%) 59  (83.10%)
Shared Links in MetaPath 123 (40.46%) 123  (40.46%)
Number of Shortest Paths 52776 37477
Length Of Smallest Path 3 3
Average Path Length 13.3667 12.3315
Length of Longest Path 30 33
Minimum Path Strength 0.671667 0.7815
Average Path Strength 6.51131 5.38159
Maximum Path Strength 35.1088 17.1435
Minimum Path Correlation 0.701133 0.700333
Average Path Correlation 0.940253 0.905687
Maximum Path Correlation 0.991 0.989
Minimum % Of Corr. Nodes 4.54545 3.22581
Average % Of Corr. Nodes 51.2194 45.8791
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 38.81 38.5354
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download class-b1_class-b2_diff_on.zip<



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