Orange: nodes, hubs and links specific of cxcr_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cxcr_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner cxcr_off Avg Int. Strength cxcr_on Avg Int. Strength cxcr_off Num Of Links cxcr_on Num Of Links ConSurf
11x35 cxcr_off00435
21x50 cxcr_off00439
32x53 cxcr_off5025436
42x60 cxcr_off10037.5735
53x36 cxcr_off5025627
63x50 cxcr_off00439
73x52 cxcr_off500515
84x50 cxcr_off00439
95x40 cxcr_off5025433
105x50 cxcr_off00439
115x61 cxcr_off00438
126x44 cxcr_off10025539
136x62 cxcr_off00532
147x28 cxcr_off00423
157x38 cxcr_off500435
161x39 Shared83.333350648
171x60 Shared500445
182x40 Shared500458
192x42 Shared10075557
20E1x50 Shared10075859
213x32 Shared10037.5745
223x37 Shared5050456
233x49 Shared16.666750448
243x51 Shared83.333387.5648
25I2x57 Shared5025546
26E2 Shared10010014143
27E2x52 Shared10025543
285x58 Shared0100478
296x48 Shared10075659
306x51 Shared10075456
31E3 Shared5050762
327x42 Shared10075756
338x50 Shared5075468
34Lig Shared10010023160
35NT cxcr_on16.666787.5360
361x32 cxcr_on00350
371x47 cxcr_on00246
381x53 cxcr_on00149
391x59 cxcr_on00255
402x38 cxcr_on00346
412x46 cxcr_on037.5249
422x57 cxcr_on00348
43E1x52 cxcr_on5050367
443x35 cxcr_on66.666725348
453x56 cxcr_on025266
46I2x52 cxcr_on00154
474x42 cxcr_on500358
484x56 cxcr_on00355
494x61 cxcr_on037.5244
504x65 cxcr_on025245
516x30 cxcr_on00240
526x58 cxcr_on00345
537x53 cxcr_on50100349
   
Orange: nodes, hubs and links specific of cxcr_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cxcr_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner cxcr_off Recurrence cxcr_on Recurrence cxcr_off Hub1? cxcr_on Hub1? cxcr_off Hub2? cxcr_on Hub2? ConSurf1 ConSurf2
17x32 7x33 cxcr_off11.41580NoNoNoNo25
27x33 7x37 cxcr_off12.94681.15389NoNoNoNo57
36x51 7x37 cxcr_off19.03755.59599YesYesNoNo67
46x51 7x38 cxcr_off15.15292.73389YesYesYesNo65
53x32 6x48 cxcr_off18.09270YesYesYesYes59
62x50 3x35 cxcr_off50.42210NoNoNoYes98
72x53 7x42 cxcr_off45.6382.53026YesNoYesYes66
82x53 7x46 cxcr_off50.63150YesNoNoNo68
92x50 7x46 cxcr_off50.34671.3726NoNoNoNo98
107x49 7x50 cxcr_off90.49210NoNoNoNo99
112x43 7x49 cxcr_off79.64590NoNoNoNo89
122x43 7x53 cxcr_off79.06130NoNoNoYes89
137x53 8x50 cxcr_off74.12480NoYesYesYes98
148x50 8x53 cxcr_off71.91530YesYesNoNo85
151x60 2x40 cxcr_off64.07920YesYesYesYes58
162x37 2x40 cxcr_off52.8411.3726NoNoYesYes78
172x37 2x39 cxcr_off49.22950NoNoNoNo78
182x39 3x46 cxcr_off21.94380NoNoNoNo89
192x39 3x50 cxcr_off26.53360NoNoYesNo89
203x50 3x53 cxcr_off21.86340YesNoNoNo98
213x53 I2x57 cxcr_off20.83821.19914NoNoYesYes86
222x42 4x45 cxcr_off13.16791.22177YesYesNoNo75
232x45 4x45 cxcr_off12.40580NoNoNoNo95
242x45 4x50 cxcr_off10.14272.30401NoNoYesNo99
252x46 3x42 cxcr_off12.56494.11403NoYesNoNo98
263x42 4x49 cxcr_off11.43922.74897NoNoNoNo87
273x41 4x49 cxcr_off10.31021.37637NoNoNoNo67
283x52 I2x57 cxcr_off18.90010YesNoYesYes56
293x51 3x52 cxcr_off11.45770YesYesYesNo85
307x42 Lig cxcr_off26.16840YesYesYesYes60
312x53 3x32 Shared55.784115.0798YesNoYesYes65
322x53 3x35 Shared50.706916.5693YesNoNoYes68
331x50 2x50 Shared10054.8022YesNoNoNo99
341x50 7x50 Shared94.512451.6686YesNoNoNo99
351x60 8x53 Shared70.648913.0246YesYesNoNo55
362x42 3x46 Shared20.657326.4527YesYesNoNo79
372x46 7x49 Shared13.687219.5784NoYesNoNo99
38E2 Lig Shared15.901790.7199YesYesYesYes30
393x32 Lig Shared28.821738.2669YesYesYesYes50
401x35 1x39 cxcr_on3.4892313.281YesNoYesYes58
411x39 7x42 cxcr_on4.762316.5994YesYesYesYes86
423x32 7x42 cxcr_on1.0234822.8063YesYesYesYes56
43Lig NT cxcr_on4.3401818.6432YesYesNoYes00
447x38 7x42 cxcr_on6.9030825.3403YesNoYesYes56
457x38 Lig cxcr_on2.6969123.3154YesNoYesYes50
461x32 NT cxcr_on014.5594NoYesNoYes00
472x57 7x42 cxcr_on8.4910730.3443NoYesYesYes86
481x42 2x57 cxcr_on017.61NoNoNoYes78
491x43 2x57 cxcr_on2.6717811.8066NoNoNoYes78
502x50 7x49 cxcr_on056.8536NoNoNoNo99
517x45 7x49 cxcr_on049.5381NoNoNoNo99
526x48 7x45 cxcr_on2.5578751.3028YesYesNoNo99
533x36 6x48 cxcr_on0.88277798.141YesNoYesYes79
543x36 3x37 cxcr_on5.0738798.3106YesNoYesYes76
553x33 3x37 cxcr_on099.6795NoNoYesYes46
563x33 4x61 cxcr_on0.482428100NoNoNoYes44
574x61 E2x52 cxcr_on1.1407493.4085NoYesYesYes43
58E2 E2x52 cxcr_on0.15745992.6694YesYesYesYes33
591x53 7x50 cxcr_on048.4671NoYesNoNo99
601x56 8x50 cxcr_on017.0444NoNoYesYes78
611x53 8x50 cxcr_on045.0545NoYesYesYes98
621x57 8x50 cxcr_on024.4617NoNoYesYes78
632x40 8x53 cxcr_on014.3218YesYesNoNo85
641x57 2x40 cxcr_on5.7723919.4615NoNoYesYes78
652x42 3x49 cxcr_on3.921412.2214YesYesYesYes78
663x46 3x50 cxcr_on021.7995NoNoYesNo99
673x50 5x58 cxcr_on027.9422YesNoYesYes98
685x54 5x58 cxcr_on042.0566NoNoYesYes88
695x54 6x44 cxcr_on060.4359NoNoYesNo89
706x44 6x48 cxcr_on9.3403562.4948YesNoYesYes99
712x42 4x42 cxcr_on011.0713YesYesNoYes78
722x46 3x43 cxcr_on016.9765NoYesNoNo98
73E1x50 E1x52 cxcr_on2.7253812.4251YesYesNoYes97
74E1x50 E2 cxcr_on1.318310.2304YesYesYesYes93
753x43 7x53 cxcr_on016.4373NoNoNoYes89
763x47 5x54 cxcr_on0.66668917.8174NoNoNoNo98
773x47 5x57 cxcr_on021.2376NoNoNoNo97
783x51 5x57 cxcr_on1.1993718.9826YesYesNoNo87
793x51 3x56 cxcr_on1.1558210.7847YesYesNoYes86
805x58 5x61 cxcr_on014.318YesYesYesNo88
816x51 Lig cxcr_on013.8127YesYesYesYes60
825x58 6x37 cxcr_on011.1882YesYesNoNo87
835x61 5x65 cxcr_on0.80069711.1882YesNoNoNo80
848x52 8x55 cxcr_on010.5396NoNoNoNo52
858x54 8x55 cxcr_on0.78729613.1641NoNoNoNo62
861x56 8x54 cxcr_on3.9364815.7585NoNoNoNo76
872x38 4x41 cxcr_on010.9846NoYesNoNo64

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x351x39Shared8.011675.9951011
1x35Ligcxcr_off2.9401010
1x392x60cxcr_off4.3416701111
1x39Ligcxcr_off7.8901110
2x533x32Shared3.196.1651121
2x537x42Shared103.86751121
2x562x60cxcr_off3.0333300021
2x577x42Shared3.361673.868750121
2x60E1x50cxcr_off4.21501112
2x603x28Shared3.171672.811112
2x607x42cxcr_off5.2501111
2x60LigShared17.113313.1651110
2x63E1x50Shared7.816676.74751112
E1x49E2Shared12.28333.91751121
E1x50E2Shared5.036674.15251121
3x22E2Shared7.1956.676251021
3x294x65Shared4.513338.151112
3x29Ligcxcr_off4.3033301110
3x326x48cxcr_off3.1466701112
3x327x38cxcr_off3.7516701111
3x327x42Shared7.048333.741111
3x32LigShared5.503337.578751110
3x366x48Shared6.277.051251022
3x366x52cxcr_off4.7201022
4x61E2x52Shared8.2359.720121
4x64E2Shared20.56338.246251121
4x65E2x52Shared8.318.303750121
E2E2Shared44.340.9751111
E2E2x51Shared12.2758.39251111
E2E2x52Shared11.56.386251111
5x36E2x52cxcr_off3.601111
5x35E2Shared14.001711.82371121
5x36E2cxcr_off6.9133301111
5x406x58Shared4.823336.5151011
5x406x59Shared4.6255.276251012
5x406x62cxcr_off4.76501011
6x486x51cxcr_off6.2716701021
6x516x55Shared7.788337.5350112
6x517x37Shared6.451674.9950112
6x517x38Shared7.523336.246250111
6x547x34Shared3.7453.061250021
6x586x62Shared3.551674.106251111
6x62E3cxcr_off3.57501112
7x27E3Shared3.493.343751112
7x277x31cxcr_off4.4816701111
7x34LigShared3.651674.278751110
7x35LigShared9.528333.5450010
7x38LigShared8.943339.27751110
7x42Ligcxcr_off14.11501110
LigNTShared13.921741.12751101
1x247x28cxcr_off3.2133301012
1x24Ligcxcr_off2.9533301010
1x397x42Shared2.923335.91751111
2x603x32Shared4.341679.213751111
2x63Ligcxcr_off6.2283301110
3x323x36cxcr_off4.6901112
4x645x35cxcr_off3.5083301122
E2LigShared15.858331.74251110
E2x51LigShared4.4616711.5451110
5x34E2cxcr_off2.97500021
6x58LigShared4.874.453751110
6x62LigShared3.4355.573751110
6x64E3cxcr_off3.37500012
7x27LigShared4.5633313.37621110
7x31Ligcxcr_off2.9733301010
7x387x42Shared3.303337.738751111
E2x52Ligcxcr_off5.58501110
5x40Ligcxcr_off3.7501010
5x39E2Shared2.751673.703751121
1x392x61Shared2.668333.66751112
7x24NTShared2.426677.05250021
1x311x35Shared2.288334.006250021
1x397x39cxcr_off2.2233301112
1x277x28cxcr_off2.0433300022
1x352x64Shared1.841673.081012
1x25NTcxcr_off1.55500021
5x32E2Shared1.4453.823750021
5x33Ligcxcr_off1.30500010
5x376x62Shared1.221675.460021
NTNTcxcr_on024.84621111
1x277x31cxcr_on04.4750021
1x392x57cxcr_on04.688751112
2x63E2cxcr_on04.44751111
3x294x61cxcr_on03.866251112
4x614x65cxcr_on04.46250122
5x39E2x52cxcr_on03.881251121
5x36Ligcxcr_on06.058751110
5x376x59cxcr_on04.03750022
5x406x55cxcr_on07.71012
6x516x52cxcr_on05.631250112
6x51Ligcxcr_on04.4850110
E3E3cxcr_on03.833750122
7x28NTcxcr_on06.12250121
5x36E2x51cxcr_on06.9451111
5x315x34cxcr_on04.12250122
1x247x31cxcr_on03.951011
6x64Ligcxcr_on02.91250010
6x587x30cxcr_on02.67751112
1x32NTcxcr_on02.36250121
5x335x36cxcr_on02.336250011
5x31E2cxcr_on01.36250121

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
cxcr_off cxcr3_off
cxcr4_off
cxcr_on cxcr3_on
cxcr4_on
cxcr1_on
cxcr2_on
Network Difference
Value cxcr_off cxcr_on
Imin 2.90833 3.56125
Number of Linked Nodes 263 280
Number of Specific Nodes 1 (0.38%) 18  (6.43%)
Number of Shared Nodes 262 (99.62%) 262  (93.57%)
Number of Links 302 309
Number of Specific Links 132 (43.71%) 139  (44.98%)
Number of Shared Links 170 (56.29%) 170  (55.02%)
Number of Hubs 34 38
Number of Specific Hubs 15 (44.12%) 19  (50.00%)
Number of Shared Hubs 19 (55.88%) 19  (50.00%)
Average % Shared Neighbours (Jaccard) 41.55
Average % Shared Neighbours (Otsuka) 51.02
Average % Shared Neighbours (Overlap Coefficient) 60.99
Average % Shared Cliques (k3-6) 54.17
Graphlets Similarity 0.611443
Paths Difference
Value cxcr_off cxcr_on
Number Of Nodes in MetaPath 39 58
Specific Nodes in MetaPath 16 (41.03%) 35  (60.34%)
Shared Nodes in MetaPath 262 (99.62%) 262  (99.62%)
Number Of Links MetaPath 39 57
Specific Links in MetaPath 30 (76.92%) 48  (84.21%)
Shared Links in MetaPath 170 (56.29%) 170  (56.29%)
Number of Shortest Paths 80138 51343
Length Of Smallest Path 3 3
Average Path Length 16.7218 14.2587
Length of Longest Path 34 33
Minimum Path Strength 0.728889 0.69375
Average Path Strength 5.57351 6.70294
Maximum Path Strength 18.2108 28.2312
Minimum Path Correlation 0.7 0.70875
Average Path Correlation 0.90409 0.939893
Maximum Path Correlation 0.986667 0.98875
Minimum % Of Corr. Nodes 3.57143 3.22581
Average % Of Corr. Nodes 32.1806 51.1666
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 41.023 44.9839
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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