Orange: nodes, hubs and links specific of dop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of dop_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner dop_off Avg Int. Strength dop_on Avg Int. Strength dop_off Num Of Links dop_on Num Of Links ConSurf
11x39 dop_off3.639.555428
22x45 dop_off9.616.14333439
32x50 dop_off6.9551.95419
42x57 dop_off3.4627.69333537
53x37 dop_off5.064.5436
63x43 dop_off4.493.835428
73x49 dop_off9.542510.555428
85x61 dop_off4.6654.74667438
96x30 dop_off2.626.32427
106x34 dop_off6.67253.93333437
116x44 dop_off10.8858.02429
127x27 dop_off3.794.99667433
137x42 dop_off8.222511.9033437
147x45 dop_off5.6559.42439
157x53 dop_off6.91256.9439
168x47 dop_off7.54255.41428
17Lig Shared9.2312.878311180
182x42 Shared7.9066.23547
19E1x50 Shared5.3526.65833568
20E1x52 Shared8.1558.266456
213x34 Shared5.436.875544
223x51 Shared6.767.7575548
234x50 Shared8.798.4125449
24E2 Shared12.74410.37210154
255x44 Shared5.82255.7375445
265x47 Shared6.1385.194557
275x58 Shared7.36.05833469
286x48 Shared9.246675.82833668
291x36 dop_on6.186674.805346
301x53 dop_on5.053.2425148
312x41 dop_on2.463332.95345
322x43 dop_on9.672.5575148
332x44 dop_on4.3856.5925245
342x64 dop_on7.786.4925245
35E2x50 dop_on6.096675.6425349
365x40 dop_on6.666678.505345
37I3 dop_on05.13571074
386x52 dop_on8.126674.1375347
39E3 dop_on11.833311.242351
407x49 dop_on7.4355.7249
418x50 dop_on7.216676.0825348
   
Orange: nodes, hubs and links specific of dop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of dop_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner dop_off Recurrence dop_on Recurrence dop_off Hub1? dop_on Hub1? dop_off Hub2? dop_on Hub2? ConSurf1 ConSurf2
15x40 Lig dop_off39.98345.14248NoYesYesYes50
25x43 Lig dop_off39.74391.35079NoNoYesYes50
36x48 Lig dop_off80.14180YesYesYesYes80
41x39 2x57 dop_off22.28060YesNoYesNo87
51x36 2x61 dop_off11.36591.54038NoYesNoNo67
61x39 2x61 dop_off13.58570YesNoNoNo87
72x54 2x57 dop_off13.58570NoNoYesNo67
81x50 2x50 dop_off10.67510NoNoYesNo99
92x50 7x49 dop_off20.8990YesNoNoYes99
107x49 7x53 dop_off22.88857.84999NoYesYesNo99
116x36 7x53 dop_off28.7280NoNoYesNo89
126x36 8x47 dop_off38.11370NoNoYesNo88
136x32 8x47 dop_off58.61660NoNoYesNo78
146x32 6x33 dop_off63.21270NoNoNoNo77
153x50 6x33 dop_off64.75080NoNoNoNo97
163x50 6x34 dop_off67.69830NoNoYesNo97
175x61 6x34 dop_off83.66030YesNoYesNo87
183x47 5x58 dop_off75.88651.53445NoNoYesYes99
193x47 5x54 dop_off76.28260NoNoNoNo98
205x54 6x41 dop_off77.44310NoNoNoNo87
213x43 6x41 dop_off78.93520YesNoNoNo87
223x43 6x44 dop_off87.57480YesNoYesNo89
236x44 6x48 dop_off82.41692.86154YesNoYesYes98
242x45 4x50 dop_off32.41236.65324YesNoYesYes99
252x45 4x49 dop_off36.19780YesNoNoNo97
263x41 4x49 dop_off37.71760NoNoNoNo47
273x37 3x41 dop_off37.8651.50483YesNoNoNo64
283x37 5x43 dop_off38.33470YesNoNoNo65
291x60 I1x50 dop_off10.67510NoNoNoNo56
308x50 I1x50 dop_off12.75670NoYesNoNo86
318x47 8x50 dop_off20.8990YesNoNoYes88
322x45 4x46 dop_off44.90197.41158YesNoNoNo97
332x42 3x46 dop_off30.42280YesYesNoNo78
342x42 3x49 dop_off16.30285.88897YesYesYesNo78
352x46 3x43 dop_off15.98050NoNoYesNo98
362x46 3x42 dop_off16.43185.72901NoNoNoNo97
373x28 E1x50 dop_off11.18170NoNoYesYes58
382x63 E1x50 dop_off38.50050.0651697NoNoYesYes58
392x60 2x63 dop_off44.2480NoNoNoNo65
405x36 E2 dop_off27.92671.95509NoNoYesYes54
415x36 5x40 dop_off29.99911.46928NoNoNoYes55
42E1x50 E2x50 dop_off11.20940.11849YesYesNoYes89
433x34 4x50 dop_off18.80814.49079YesYesYesYes49
443x36 6x52 dop_off13.92650NoNoNoYes67
455x58 6x37 dop_off31.08591.54038YesYesNoNo97
463x51 5x61 dop_off22.88850YesYesYesNo88
474x41 I2x56 dop_off12.32380NoNoNoNo54
485x35 E2 dop_off11.36591.57NoNoYesYes34
495x47 6x52 dop_off45.38099.36074YesYesNoYes77
505x44 5x47 dop_off17.39890.112566YesYesYesYes57
515x44 5x48 dop_off11.78044.24196YesYesNoNo54
526x30 6x34 dop_off20.70554.55596YesNoYesNo77
535x65 6x30 dop_off12.45280NoNoYesNo87
545x65 5x66 dop_off10.67510NoNoNoNo85
556x58 Lig dop_off15.38186.51697NoNoYesYes40
566x58 E3 dop_off13.38315.2906NoNoNoYes41
577x42 Lig dop_off84.81160YesNoYesYes70
582x45 3x42 dop_off14.80158.47207YesNoNoNo97
593x46 6x37 dop_off29.84250NoNoNoNo87
603x36 Lig Shared14.948931.5185NoNoYesYes60
612x57 7x42 Shared46.596799.0817YesNoYesNo77
625x58 5x61 Shared10024.0536YesYesYesNo98
632x41 4x46 Shared10.675137.9229NoYesNoNo57
642x42 4x46 Shared41.641333.1122YesYesNoNo77
652x42 4x45 Shared12.213324.1839YesYesNoNo75
662x60 7x42 Shared46.007299.3009NoNoYesNo67
67E1x50 E1x52 Shared13.548913.0754YesYesYesYes86
686x48 6x52 Shared34.125524.6875YesYesNoYes87
692x64 7x35 dop_on2.1276613.3776NoYesNoNo54
701x39 7x35 dop_on016.245YesNoNoNo84
711x39 7x38 dop_on017.661YesNoNoNo85
727x38 Lig dop_on6.8435118.4727NoNoYesYes50
732x60 Lig dop_on0100NoNoYesYes60
741x42 2x57 dop_on6.8711412.0327NoNoYesNo77
751x43 2x57 dop_on4.5961196.8956NoNoYesNo67
761x43 1x47 dop_on096.2794NoNoNoNo66
771x47 2x54 dop_on6.8711495.9536NoNoNoNo66
782x54 7x47 dop_on095.6159NoNoNoNo67
791x50 7x47 dop_on094.9049NoNoNoNo97
801x50 7x51 dop_on094.1466NoNoNoNo96
811x53 7x51 dop_on092.9202NoYesNoNo86
821x53 1x57 dop_on087.6829NoYesNoNo87
831x53 7x54 dop_on013.1821NoYesNoNo86
841x57 2x44 dop_on062.4978NoNoNoYes75
851x54 2x44 dop_on4.3013716.7309NoNoNoYes75
861x54 2x48 dop_on6.4290315.4985NoNoNoNo76
877x54 8x50 dop_on011.7187NoNoNoYes68
881x57 2x43 dop_on044.0666NoNoNoYes78
892x44 I1x50 dop_on044.3273NoYesNoNo56
902x41 I1x50 dop_on043.2549NoYesNoNo56
912x43 3x46 dop_on034.5103NoYesNoNo88
922x48 4x50 dop_on8.5382714.4321NoNoYesYes69
932x56 2x60 dop_on010.4331NoNoNoNo56
94E1x50 Lig dop_on015.8896YesYesYesYes80
95E2 Lig dop_on031.0149YesYesYesYes40
963x36 6x48 dop_on1.1789624.1424NoNoYesYes68
976x52 Lig dop_on041.0392NoYesYesYes70
983x40 6x48 dop_on018.1587NoNoYesYes78
993x40 5x50 dop_on6.484313.028NoNoNoNo79
1006x48 7x45 dop_on5.885623.2419YesYesYesNo89
1017x45 7x49 dop_on018.1587YesNoNoYes99
1023x46 3x50 dop_on033.2484NoNoNoNo89
1033x50 5x58 dop_on031.9746NoNoYesYes99
1044x45 I2x56 dop_on020.1374NoNoNoNo54
1053x52 I2x56 dop_on8.3540618.9407NoNoNoNo54
1063x48 3x52 dop_on017.5544NoNoNoNo65
1073x48 5x57 dop_on2.164516.1562NoNoNoNo66
1083x51 5x57 dop_on4.3197914.7461YesYesNoNo86
1095x61 5x65 dop_on018.5319YesNoNoNo88
1105x65 I3 dop_on017.0922NoNoNoYes84

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x32Ligdop_off16.8101010
3x33LigShared12.113.680110
3x36LigShared13.628.381110
5x40LigShared5.8212.160110
5x43LigShared4.15.050010
6x48Ligdop_off7.0601010
6x51Ligdop_off4.9101010
6x55LigShared17.434.040110
7x38LigShared6.8810.251110
7x42Ligdop_off8.8801010
2x563x28dop_off9.5200022
2x577x42Shared4.6915.240021
2x602x63dop_off8.1400111
2x607x42Shared11.2711.270111
2x63E1x50Shared4.644.640111
E1x49E2Shared6.534.852021
E1x50E1x52Shared9.0217.040112
E1x50E2x50Shared7.846.530111
3x22E2Shared16.998.490121
3x25E2x50Shared7.287.280121
3x327x42Shared8.059.21011
3x334x60Shared9.6712.090112
3x366x48Shared8.145.821111
3x366x52dop_off6.5701111
3x375x43dop_off5.2400021
3x406x44dop_off8.7900022
E2E2Shared36.4533.942111
E2E2x51Shared5.925.242112
5x35E2Shared4.019.772021
5x36E2Shared9.5514.332121
5x39E2Shared6.499.080021
5x365x40Shared9.688.32121
5x406x59Shared4.59.010112
5x445x47Shared4.299.651122
5x476x52Shared13.583.391121
6x446x48Shared25.0511.021021
6x447x45dop_off4.8301022
6x486x52Shared4.234.231011
6x487x41dop_off4.2201012
6x487x45Shared6.787.911012
6x517x38dop_off4.4201011
6x547x34Shared8.539.740021
6x58E3Shared20.0450112
6x58LigShared3.926.130110
4x63E2Shared3.733.730121
2x632x64dop_off3.5800112
1x392x57dop_off3.5200022
3x33E2x52dop_off3.5200111
3x29E2x50Shared3.173.170111
3x294x64dop_off3.1500112
7x347x38Shared2.854.280111
3x21E1x50Shared2.812.810021
3x28E1x50dop_off2.4500021
5x32E2Shared1.322.640021
1x397x38dop_on06.040021
2x562x60dop_on05.670021
2x60Ligdop_on010.540110
2x63Ligdop_on015.20110
3x25E1x50dop_on03.920121
E1x50Ligdop_on05.010110
3x25E2dop_on03.380121
3x29Ligdop_on04.870110
3x363x37dop_on03.731112
3x406x48dop_on03.520021
4x60E2x52dop_on04.280021
E2E3dop_on011.732112
E2Ligdop_on03.682110
E2x50Ligdop_on05.590110
E2E2x52dop_on03.652111
E2x52Ligdop_on05.30110
5x31E2dop_on07.130121
5x366x59dop_on02.892122
5x406x55dop_on04.550111
5x446x52dop_on05.661121
6x516x55dop_on03.071011
6x517x37dop_on03.271012
6x52Ligdop_on03.271110
E3E3dop_on016.670122
7x34Ligdop_on05.960110
6x487x46dop_on02.471012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
dop_off 4EJ4-δ-Naltrindole
dop_on 8F7S-δ-Deltorphin-Gi1/β1/γ2
Network Difference
Value dop_off dop_on
Imin 4 2.83
Number of Linked Nodes 241 239
Number of Specific Nodes 18 (7.47%) 16  (6.69%)
Number of Shared Nodes 223 (92.53%) 223  (93.31%)
Number of Links 250 259
Number of Specific Links 124 (49.60%) 133  (51.35%)
Number of Shared Links 126 (50.40%) 126  (48.65%)
Number of Hubs 28 25
Number of Specific Hubs 16 (57.14%) 13  (52.00%)
Number of Shared Hubs 12 (42.86%) 12  (48.00%)
Average % Shared Neighbours (Jaccard) 34.93
Average % Shared Neighbours (Otsuka) 43.26
Average % Shared Neighbours (Overlap Coefficient) 52.03
Average % Shared Cliques (k3-6) 75.00
Graphlets Similarity 0.446741
Paths Difference
Value dop_off dop_on
Number Of Nodes in MetaPath 67 51
Specific Nodes in MetaPath 39 (58.21%) 23  (45.10%)
Shared Nodes in MetaPath 223 (92.53%) 223  (92.53%)
Number Of Links MetaPath 68 51
Specific Links in MetaPath 59 (86.76%) 42  (82.35%)
Shared Links in MetaPath 126 (50.40%) 126  (50.40%)
Number of Shortest Paths 28708 32407
Length Of Smallest Path 3 3
Average Path Length 12.4765 14.5835
Length of Longest Path 30 33
Minimum Path Strength 1.295 1.435
Average Path Strength 7.21262 6.02211
Maximum Path Strength 17.12 14.44
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.922362 0.917827
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.7619 3.7037
Average % Of Corr. Nodes 51.5426 48.4744
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 43.3544 29.4231
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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