Orange: nodes, hubs and links specific of dopamine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of dopamine_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner dopamine_off Avg Int. Strength dopamine_on Avg Int. Strength dopamine_off Num Of Links dopamine_on Num Of Links ConSurf
11x35 dopamine_off500635
21x39 dopamine_off500437
32x57 dopamine_off031.1111539
43x24 dopamine_off33.333320436
53x44 dopamine_off00427
63x49 dopamine_off10020538
73x50 dopamine_off1000839
84x50 dopamine_off026.6667439
95x65 dopamine_off00428
105x67 dopamine_off00416
117x30 dopamine_off00436
127x34 dopamine_off66.666713.3333425
138x49 dopamine_off00427
141x46 Shared00448
151x50 Shared83.333353.3333449
162x64 Shared00447
17E1x50 Shared10095.5556569
18E2 Shared1001008105
195x39 Shared077.7778458
205x58 Shared5095.5556459
216x44 Shared10088.8889549
226x48 Shared100100669
236x49 Shared00447
246x51 Shared10083.3333658
256x52 Shared33.333390558
266x55 Shared5040448
27E3 Shared83.333340644
287x39 Shared33.333355.5556448
297x42 Shared100100478
307x53 Shared10093.3333569
318x50 Shared10077.7778669
328x54 Shared00449
33Lig Shared10010011110
34I2x53 Shared5093.3333460
351x60 dopamine_on00358
362x38 dopamine_on00347
372x42 dopamine_on060248
382x46 dopamine_on068.8889249
392x50 dopamine_on075.5556259
402x60 dopamine_on040248
41E1x52 dopamine_on16.666720347
423x51 dopamine_on033.3333348
43I2x52 dopamine_on00140
445x47 dopamine_on097.7778359
456x30 dopamine_on00349
467x49 dopamine_on048.8889249
   
Orange: nodes, hubs and links specific of dopamine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of dopamine_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner dopamine_off Recurrence dopamine_on Recurrence dopamine_off Hub1? dopamine_on Hub1? dopamine_off Hub2? dopamine_on Hub2? ConSurf1 ConSurf2
11x39 2x64 dopamine_off10.35520YesNoYesYes77
21x39 2x60 dopamine_off27.8270YesNoNoYes78
31x42 2x57 dopamine_off83.20970NoNoYesNo79
41x42 1x46 dopamine_off82.17844.01943NoNoYesYes78
51x46 7x46 dopamine_off77.93260YesYesNoNo89
61x50 7x50 dopamine_off70.0384.62368YesYesNoNo99
71x53 7x50 dopamine_off66.47370NoNoNoNo99
81x53 7x53 dopamine_off65.21920NoNoYesYes99
97x53 8x50 dopamine_off51.40820YesYesYesYes99
108x50 8x54 dopamine_off18.20160.443629YesYesYesYes99
111x57 8x50 dopamine_off11.58566.88007NoNoYesYes89
126x48 Lig dopamine_off82.75130YesYesYesYes90
133x40 6x44 dopamine_off88.9030NoNoYesYes99
143x40 5x50 dopamine_off88.14910NoNoNoNo99
153x41 5x50 dopamine_off86.60516.97185NoNoNoNo89
163x41 4x52 dopamine_off17.59241.75157NoNoNoNo87
174x52 4x55 dopamine_off16.12690NoNoNoNo75
184x51 4x55 dopamine_off14.7943.95059NoNoNoNo55
194x47 4x51 dopamine_off13.55171.97721NoNoNoNo55
204x43 4x47 dopamine_off12.4540NoNoNoNo55
214x39 4x43 dopamine_off11.48910NoNoNoNo65
223x41 3x44 dopamine_off70.48430NoNoYesNo87
233x44 5x54 dopamine_off67.66180YesNoNoNo79
243x50 6x37 dopamine_off34.59380YesNoNoNo98
253x49 3x50 dopamine_off14.7880YesNoYesNo89
263x39 6x44 dopamine_off16.27770NoNoYesYes99
272x46 3x39 dopamine_off14.70360NoYesNoNo99
282x53 2x57 dopamine_off10.55420NoNoYesNo89
294x60 5x39 dopamine_off49.90059.82484NoNoYesYes88
304x60 E2 dopamine_off48.85110NoNoYesYes85
313x22 E2 dopamine_off34.2321.54123NoNoYesYes35
323x22 3x25 dopamine_off33.12830NoNoNoNo39
333x25 E1x50 dopamine_off29.98611.98103NoNoYesYes99
34E1x50 E1x52 dopamine_off17.42969.80572YesYesNoYes97
352x62 E1x52 dopamine_off16.18123.95824NoNoNoYes67
362x62 2x66 dopamine_off11.59161.98103NoNoNoNo65
373x33 Lig dopamine_off16.06667.54933NoNoYesYes80
383x50 6x30 dopamine_off12.53840YesNoNoYes99
395x58 5x61 dopamine_off27.99590YesYesNoNo99
405x61 5x65 dopamine_off11.34430NoNoYesNo98
415x36 E2 dopamine_off11.58560.0879608NoNoYesYes75
426x55 Lig dopamine_off10.53625.86661YesYesYesYes80
433x51 5x60 dopamine_off13.07525.70981NoYesNoNo87
445x60 5x63 dopamine_off11.51920NoNoNoNo75
457x49 7x53 dopamine_off13.63610NoYesYesYes99
466x40 7x49 dopamine_off12.02580NoNoNoYes99
476x40 7x52 dopamine_off10.33710NoNoNoNo98
487x30 E3 dopamine_off13.93760YesNoYesYes64
492x38 4x38 dopamine_off12.52645.76717NoYesNoNo76
502x60 7x42 Shared29.045340.0145NoYesYesYes88
512x57 7x42 Shared88.028519.3667YesNoYesYes98
521x39 7x39 Shared12.731419.0952YesNoYesYes78
532x50 7x46 Shared76.84120.579NoYesNoNo99
541x50 2x50 Shared75.737377.83YesYesNoYes99
558x50 I1x50 Shared13.081231.7194YesYesNoNo99
567x42 Lig Shared10088.2744YesYesYesYes80
576x44 6x48 Shared98.763655.4727YesYesYesYes99
583x47 5x54 Shared64.78573.9521NoNoNoNo99
593x47 5x58 Shared62.84369.8983NoNoYesYes99
605x58 6x37 Shared39.430758.8229YesYesNoNo98
612x46 3x42 Shared13.117455.4689NoYesNoNo98
625x43 Lig Shared55.931536.412NoNoYesYes90
635x39 5x43 Shared55.117334.8134YesYesNoNo89
643x51 5x61 Shared16.15113.6263NoYesNoNo89
656x52 Lig Shared15.553981.6047YesYesYesYes80
665x47 6x52 Shared23.894837.8308NoYesYesYes98
675x47 6x49 Shared19.46220.514NoYesYesYes97
686x51 7x34 Shared13.678312.8805YesYesYesNo85
696x58 7x34 Shared27.127411.7562NoNoYesNo55
706x58 E3 Shared24.250610.6241NoNoYesYes54
717x39 7x42 dopamine_on031.4326YesYesYesYes88
721x46 2x57 dopamine_on013.9437YesYesYesNo89
733x36 Lig dopamine_on1.0433655.618NoNoYesYes80
743x36 6x48 dopamine_on0.72975156.0119NoNoYesYes89
756x48 7x45 dopamine_on0100YesYesNoNo99
767x45 7x49 dopamine_on098.497NoNoNoYes99
772x50 7x49 dopamine_on070.7626NoYesNoYes99
786x48 6x52 dopamine_on9.8365674.3919YesYesYesYes98
791x50 2x47 dopamine_on1.7489967.5807YesYesNoNo99
801x53 2x47 dopamine_on063.4274NoNoNoNo99
811x53 7x54 dopamine_on061.3393NoNoNoNo98
827x54 8x50 dopamine_on047.6098NoNoYesYes89
831x60 I1x50 dopamine_on4.7705215.5079NoYesNoNo89
842x46 7x49 dopamine_on033.3639NoYesNoYes99
852x45 3x42 dopamine_on9.9089343.3532NoNoNoNo98
862x45 4x46 dopamine_on1.6766237.1118NoNoNoNo99
872x42 4x46 dopamine_on035.5324NoYesNoNo89
882x42 3x49 dopamine_on029.3636NoYesYesNo88
893x49 I2x53 dopamine_on0.19299226.3844YesNoYesYes80
902x38 I2x53 dopamine_on017.661NoYesYesYes70
913x43 7x49 dopamine_on038.6454NoNoNoYes89
922x53 7x46 dopamine_on018.3226NoNoNoNo89
932x53 3x35 dopamine_on8.9741316.0586NoNoNoNo87
942x52 3x35 dopamine_on8.2504113.7869NoNoNoNo77
952x60 3x28 dopamine_on027.8109NoYesNoNo87
963x28 E1x50 dopamine_on022.5027NoNoYesYes79
975x39 E2 dopamine_on012.9379YesYesYesYes85
983x42 4x49 dopamine_on1.6766212.1233NoNoNoNo89
993x41 4x49 dopamine_on010.4138NoNoNoNo89
1003x43 7x53 dopamine_on076.7554NoNoYesYes89
1015x54 6x44 dopamine_on075.2677NoNoYesYes99
1023x50 5x58 dopamine_on032.5417YesNoYesYes99
1035x47 6x44 dopamine_on035.1002NoYesYesYes99
1043x47 5x57 dopamine_on1.6464655.4574NoNoNoNo97
1053x51 5x57 dopamine_on052.7497NoYesNoNo87
1063x51 3x55 dopamine_on1.6464631.3791NoYesNoNo88
1073x55 3x56 dopamine_on028.6026NoNoNoNo86
1083x56 I2x52 dopamine_on1.3087320.2272NoNoNoYes60
1095x58 6x40 dopamine_on032.274YesYesNoNo99
1106x40 7x53 dopamine_on032.1401NoNoYesYes99
1115x58 6x41 dopamine_on016.0356YesYesNoNo98
1125x62 6x37 dopamine_on053.7517NoNoNoNo78
1135x62 5x66 dopamine_on1.6464648.6576NoNoNoNo76
1145x66 6x30 dopamine_on043.5559NoNoNoYes69
1155x69 6x30 dopamine_on018.3379NoNoNoYes69
1167x52 7x53 dopamine_on022.1661NoNoYesYes89
1176x39 7x52 dopamine_on6.9416816.0662NoNoNoNo88
1186x39 7x56 dopamine_on5.2228511.9856NoNoNoNo88
1196x49 6x50 dopamine_on6.6763215.8215YesYesNoNo79
1206x50 7x37 dopamine_on3.3592711.0601NoNoNoNo95
1217x54 8x54 dopamine_on8.6484511.6185NoNoYesYes89
1223x54 5x61 dopamine_on010.7886NoNoNoNo89
1235x55 6x41 dopamine_on010.7197NoNoNoNo68
1248x49 I1x50 dopamine_on6.8451814.372YesNoNoNo79
1255x68 6x30 dopamine_on014.2191NoNoNoYes89
1268x49 8x52 dopamine_on012.1004YesNoNoNo76
1271x35 2x64 dopamine_on7.3819417.4545YesNoYesYes57
1282x64 7x39 dopamine_on0.02412411.6414YesYesYesYes78
129I2 I2x52 dopamine_on010.1729NoNoNoYes00
1305x69 5x73 dopamine_on013.0526NoNoNoNo60
1313x50 7x53 dopamine_on031.8151YesNoYesYes99
1325x73 5x77 dopamine_on010.3832NoNoNoNo00
1332x60 2x64 dopamine_on012.1807NoYesYesYes87
1342x46 2x50 dopamine_on028.9391NoYesNoYes99
1352x46 3x43 dopamine_on039.1464NoYesNoNo98
1366x51 6x52 dopamine_on1.3087312.8155YesYesYesYes88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared7.056676.683780121
2x577x42Shared6.186677.756440021
2x607x42Shared4.838336.945110121
3x327x42Shared8.241678.8071111
3x32LigShared19.315.0081110
3x334x57Shared4.308334.676110012
3x334x61dopamine_off3.4766700012
3x33LigShared5.9816711.14410010
3x366x48Shared5.8754.267561011
3x36LigShared7.408336.004221010
3x374x56dopamine_off4.1883300022
3x375x461Shared7.9958.845110021
3x406x44dopamine_off5.7200022
4x615x39Shared9.943334.440422
E2x52LigShared10.42834.598440010
5x395x43Shared5.0633311.37430421
5x406x55Shared7.148337.287560021
5x43LigShared4.553336.768220010
5x476x52Shared23.422.38540121
6x446x48Shared12.86335.835440121
6x447x45dopamine_off8.6600122
6x486x51dopamine_off5.3433301011
6x486x52Shared4.1756.202891011
6x487x41Shared11.266.253671012
6x48Ligdopamine_off10.1501010
6x516x52Shared5.541679.157891111
6x516x55Shared11.319.140671111
6x517x34Shared3.783333.187891112
6x517x38Shared4.1054.698891111
6x51LigShared11.561714.28821110
6x52LigShared8.623337.936221110
6x557x34dopamine_off10.706701112
7x347x38dopamine_off3.9533301021
7x38LigShared4.743335.9791110
7x42LigShared6.748.903331110
6x55LigShared6.3556.978221110
5x446x52Shared2.865.663780021
2x567x42dopamine_on03.806330121
2x607x39dopamine_on06.068110122
3x406x48dopamine_on012.73690021
5x461Ligdopamine_on04.269890010
5x476x44dopamine_on05.169110122
6x487x45dopamine_on011.26231012
7x387x42dopamine_on04.634111111
7x397x42dopamine_on05.307443121
5x446x55dopamine_on03.824220021
3x29E2x52dopamine_on03.547780021
4x565x461dopamine_on03.517675021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
dopamine_off d2_off
d3_off
dopamine_on d2_on
d1_on
d3_on
d4_on
d5_on
Network Difference
Value dopamine_off dopamine_on
Imin 3.45 3.64822
Number of Linked Nodes 263 283
Number of Specific Nodes 2 (0.76%) 22  (7.77%)
Number of Shared Nodes 261 (99.24%) 261  (92.23%)
Number of Links 286 306
Number of Specific Links 114 (39.86%) 134  (43.79%)
Number of Shared Links 172 (60.14%) 172  (56.21%)
Number of Hubs 34 33
Number of Specific Hubs 13 (38.24%) 12  (36.36%)
Number of Shared Hubs 21 (61.76%) 21  (63.64%)
Average % Shared Neighbours (Jaccard) 44.40
Average % Shared Neighbours (Otsuka) 53.68
Average % Shared Neighbours (Overlap Coefficient) 63.02
Average % Shared Cliques (k3-6) 54.84
Graphlets Similarity 0.651375
Paths Difference
Value dopamine_off dopamine_on
Number Of Nodes in MetaPath 73 81
Specific Nodes in MetaPath 27 (36.99%) 35  (43.21%)
Shared Nodes in MetaPath 261 (99.24%) 261  (99.24%)
Number Of Links MetaPath 70 87
Specific Links in MetaPath 49 (70.00%) 66  (75.86%)
Shared Links in MetaPath 172 (60.14%) 172  (60.14%)
Number of Shortest Paths 38076 76247
Length Of Smallest Path 3 3
Average Path Length 15.4625 13.8288
Length of Longest Path 36 27
Minimum Path Strength 0.5275 0.329528
Average Path Strength 5.89999 6.06825
Maximum Path Strength 15.7392 16.5385
Minimum Path Correlation 0.701667 0.702222
Average Path Correlation 0.915263 0.90575
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.125 4
Average % Of Corr. Nodes 39.6467 38.535
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 41.1041 43.3564
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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