Orange: nodes, hubs and links specific of ep4_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ep4_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ep4_off Avg Int. Strength ep4_on Avg Int. Strength ep4_off Num Of Links ep4_on Num Of Links ConSurf
11x39 ep4_off1000417
21x54 ep4_off00438
3I1.E51 ep4_off1000427
42x39 ep4_off1000438
5E1x51 ep4_off00424
63x34 ep4_off1000437
73x37 ep4_off500438
83x39 ep4_off1000419
93x50 ep4_off10025539
104x38 ep4_off1000538
114x59 ep4_off00438
12E2.S161 ep4_off10025435
13E2.R162 ep4_off1000434
14E2.Q164 ep4_off10025437
15E2x50 ep4_off1000429
16E2x52 ep4_off500437
175x51 ep4_off00427
186x38 ep4_off00427
19E1x50 Shared100100566
203x33 Shared10050447
213x35 Shared10050457
223x51 Shared050448
23I2x53 Shared10050548
24E2.Y165 Shared075443
25E2.W169 Shared10075665
26E2x51 Shared10075746
27E2.W174 Shared100100655
285x36 Shared10050445
295x39 Shared10075458
306x54 Shared10050456
316x58 Shared100100446
327x34 Shared10075456
337x35 Shared10050446
34Lig Shared10010012160
352x50 ep4_on025249
362x51 ep4_on00248
373x31 ep4_on050345
384x50 ep4_on050248
39E2.P166 ep4_on025246
40E2.T168 ep4_on0100256
41E2.D173 ep4_on050345
42E2.T175 ep4_on025254
435x50 ep4_on500358
445x58 ep4_on050249
455x65 ep4_on00149
465x72 ep4_on00040
476x30 ep4_on00148
486x37 ep4_on075348
497x39 ep4_on075247
507x53 ep4_on075349
517x54 ep4_on00348
   
Orange: nodes, hubs and links specific of ep4_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ep4_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ep4_off Recurrence ep4_on Recurrence ep4_off Hub1? ep4_on Hub1? ep4_off Hub2? ep4_on Hub2? ConSurf1 ConSurf2
12x64 Lig ep4_off14.22335.00468NoNoYesYes60
21x42 Lig ep4_off14.22330NoNoYesYes80
31x42 7x47 ep4_off12.12380NoNoNoNo88
43x32 Lig ep4_off21.74281.87091NoNoYesYes80
53x32 E2x51 ep4_off23.78970NoNoYesYes86
63x40 5x51 ep4_off99.21070NoNoYesNo87
75x51 6x49 ep4_off23.43195.51918YesNoNoNo77
86x49 6x50 ep4_off22.13743.6892NoNoNoNo79
96x50 7x40 ep4_off20.83251.84752NoNoNoNo98
106x47 7x40 ep4_off19.51690NoNoNoNo98
113x39 7x45 ep4_off12.68680YesNoNoNo99
125x51 6x45 ep4_off93.42240YesNoNoNo76
135x54 6x45 ep4_off93.02250NoNoNoNo86
145x54 6x41 ep4_off87.92890NoNoNoNo88
153x43 6x41 ep4_off36.57650NoNoNoNo88
163x43 3x46 ep4_off35.2610NoNoNoNo89
172x43 3x46 ep4_off43.11720NoNoNoNo89
182x43 2x47 ep4_off24.71580NoNoNoNo88
191x50 2x47 ep4_off16.77020NoNoNoNo98
202x43 7x53 ep4_off20.23260NoNoNoYes89
216x36 7x53 ep4_off12.35530NoNoNoYes89
226x37 6x41 ep4_off51.05240NoYesNoNo88
232x39 6x37 ep4_off44.22230YesNoNoYes88
242x39 6x33 ep4_off10.81880YesNoNoNo89
256x33 I1.E51 ep4_off10.97660NoNoYesNo97
262x39 3x50 ep4_off38.29190YesNoYesNo89
273x50 I2x53 ep4_off13.02880YesNoYesYes98
283x50 4x38 ep4_off12.88150YesNoYesNo98
293x49 3x50 ep4_off13.03940NoNoYesNo99
302x42 4x46 ep4_off11.03450NoNoNoNo88
313x37 4x53 ep4_off20.80613.6892YesNoNoNo88
323x38 4x53 ep4_off18.14350NoNoNoNo88
333x34 3x38 ep4_off16.79650YesNoNoNo78
343x29 E2x52 ep4_off26.31020NoNoYesNo77
353x29 E2.S161 ep4_off25.21.95276NoNoYesNo75
36E2.S161 E2x50 ep4_off18.44350YesNoYesNo59
375x58 6x37 ep4_off14.08127.84612NoYesNoYes98
385x58 6x38 ep4_off12.76570NoYesYesNo97
394x41 I2x57 ep4_off16.25450NoNoNoNo57
404x41 I2x56 ep4_off13.57080NoNoNoNo55
414x56 5x42 ep4_off12.25533.04022NoNoNoNo75
425x39 5x42 ep4_off10.94510YesYesNoNo85
43E2.P166 E2.T168 ep4_off12.87625.44902NoYesNoYes66
446x55 E2.W174 ep4_off12.87620NoNoYesYes75
455x44 6x55 ep4_off11.30291.84752NoNoNoNo77
463x33 E2x52 ep4_off21.37440.508653YesYesYesNo77
473x33 E2x51 Shared72.174392.7385YesYesYesYes76
483x33 5x43 Shared94.364387.4474YesYesNoNo77
493x37 5x43 Shared94.753785.6759YesNoNoNo87
503x37 5x46 Shared91.433483.6003YesNoNoNo86
515x46 5x50 Shared10082.9397NoNoNoYes68
523x40 5x50 Shared99.55834.8398NoNoNoYes88
536x47 7x45 Shared16.854367.9373NoNoNoNo99
54E2.W169 Lig Shared25.352683.2086YesYesYesYes50
55E2.W169 E2x51 Shared37.081789.9965YesYesYesYes56
561x50 7x50 Shared14.149781.4079NoNoNoNo99
572x42 3x49 Shared12.344816.0138NoNoNoNo89
58E2x51 E2x52 Shared13.591911.7458YesYesYesNo67
59E1x50 E2x50 Shared14.354911.5704YesYesYesNo69
603x47 5x54 Shared14.149789.3768NoNoNoNo98
613x47 5x57 Shared12.781538.2717NoNoNoNo97
623x51 5x57 Shared10.013734.4013YesYesNoNo87
63E2.W174 E2x51 Shared27.473247.4567YesYesYesYes56
64E2.T168 E2.W169 Shared14.254923.0355NoYesYesYes65
65E2.P166 E2.Y165 Shared11.487110.0678NoYesYesYes63
667x39 Lig ep4_on2.3889710.3075NoYesYesYes70
677x46 Lig ep4_on086.7926NoNoYesYes90
687x45 7x46 ep4_on043.3934NoNoNoNo99
696x47 7x43 ep4_on064.938NoNoNoNo95
702x50 7x46 ep4_on087.7222NoYesNoNo99
711x50 2x50 ep4_on0100NoNoNoYes99
721x50 2x51 ep4_on1.4891620.884NoNoNoYes98
731x53 7x50 ep4_on7.2037579.4843NoNoNoNo99
741x53 7x54 ep4_on5.7829977.5491NoNoNoYes98
751x57 7x54 ep4_on020.311NoNoNoYes88
761x57 2x40 ep4_on2.9099115.7098NoNoNoNo88
772x40 I1.K50 ep4_on013.7161NoNoNoNo87
787x43 7x48 ep4_on059.7638NoNoNoNo57
796x43 7x48 ep4_on1.4575958.729NoNoNoNo67
806x43 7x52 ep4_on2.9099157.6883NoNoNoNo68
817x52 7x53 ep4_on055.905NoNoNoYes89
823x46 7x53 ep4_on019.8667NoNoNoYes99
832x42 3x46 ep4_on018.0075NoNoNoNo89
842x43 7x54 ep4_on041.3704NoNoNoYes88
852x39 2x43 ep4_on039.2131YesNoNoNo88
862x46 2x50 ep4_on012.6228NoNoNoYes99
872x46 3x42 ep4_on1.4365415.055NoNoNoNo98
882x50 7x49 ep4_on1.4102323.6319NoYesNoNo99
897x45 7x49 ep4_on2.815228.0168NoNoNoNo99
903x42 4x50 ep4_on013.2133NoNoNoYes88
913x35 Lig ep4_on019.9719YesYesYesYes70
92E2.T168 Lig ep4_on019.6913NoYesYesYes60
932x63 E2.T168 ep4_on038.6693NoNoNoYes76
942x63 E1x50 ep4_on036.9446NoNoYesYes76
95E2.Q164 E2.W169 ep4_on5.0094723.439YesNoYesYes75
96E2.Q164 E2.W174 ep4_on2.7467917.0019YesNoYesYes75
97E2.T175 E2.W174 ep4_on042.8321NoYesYesYes45
983x33 5x39 ep4_on016.0723YesYesYesYes78
995x39 E2x52 ep4_on010.5823YesYesYesNo87
1003x43 7x53 ep4_on049.3803NoNoNoYes89
1013x44 5x50 ep4_on2.9099162.5702NoNoNoYes78
1023x44 5x54 ep4_on060.8396NoNoNoNo78
1033x47 5x58 ep4_on055.905NoNoNoYes99
1043x50 5x58 ep4_on038.833YesNoNoYes99
1053x51 3x55 ep4_on4.3517212.2778YesYesNoNo87
1063x51 3x56 ep4_on016.7855YesYesNoNo87
1073x52 3x56 ep4_on014.7275NoNoNoNo67
1083x55 5x64 ep4_on010.1906NoNoNoNo77
1093x52 I2x52 ep4_on012.6579NoNoNoNo65
110I2x52 I2x56 ep4_on010.5765NoNoNoNo55
1112x37 2x39 ep4_on016.3237NoNoYesNo78
1122x37 I1.E51 ep4_on014.026NoNoYesNo77
1134x39 I1.E51 ep4_on011.7166NoNoYesNo57
114E2.D173 E2.T175 ep4_on0.068406628.2916NoYesNoYes54
115E2.D173 E2.S160 ep4_on012.9794NoYesNoNo53
1165x36 E2.S160 ep4_on1.552310.4069YesYesNoNo53
117E2.D173 E2.T176 ep4_on5.8829712.9794NoYesNoNo54
1185x36 E2.T176 ep4_on4.367510.4069YesYesNoNo54
1197x32 7x35 ep4_on2.0995619.8784NoNoYesYes26
1206x54 7x33 ep4_on0.58408813.6109YesYesNoNo64
1216x58 E2.W174 ep4_on8.471913.0203YesYesYesYes65
1225x33 5x36 ep4_on1.6259710.4245NoNoYesYes35
1233x40 5x47 ep4_on024.8772NoNoNoNo87
1245x47 6x52 ep4_on1.6417623.1759NoNoNoNo77
1256x52 6x56 ep4_on3.2782618.0016NoNoNoNo76
1265x41 6x56 ep4_on010.939NoNoNoNo56
1273x50 6x33 ep4_on1.3418237.3363YesNoNoNo99
1285x65 6x33 ep4_on035.5999NoYesNoNo99
1295x65 6x30 ep4_on021.9305NoYesNoYes98
1305x65 6x34 ep4_on010.5589NoYesNoNo97
1317x32 E3.E303 ep4_on013.7102NoNoNoNo23
132E3.E303 E3.E305 ep4_on019.0248NoNoNoNo31
133E3.E305 E3.K308 ep4_on015.242NoNoNoNo14
1347x54 7x55 ep4_on018.3641NoYesNoNo86
1357x51 7x55 ep4_on013.7804NoNoNoNo76
1362x39 8x47 ep4_on021.492YesNoNoNo89
1378x47 8x50 ep4_on1.4575919.2236NoNoNoNo97
1381x56 8x50 ep4_on017.2182NoNoNoNo77
1391x56 8x49 ep4_on014.9146NoNoNoNo77
1408x49 8x53 ep4_on010.29NoNoNoNo77
1415x39 E2.L158 ep4_on1.5417815.1368YesYesNoNo85
1425x69 6x30 ep4_on015.9846NoNoNoYes58
1436x54 7x34 ep4_on3.5834612.4708YesYesYesYes66
1447x35 Lig ep4_on0.70511517.8613YesYesYesYes60
145E2.P166 E2.W169 ep4_on010.7051NoYesYesYes65
1463x43 5x54 ep4_on048.8891NoNoNoNo88
1477x34 E2.W174 ep4_on6.1092411.3482YesYesYesYes65

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x362x64Shared3.7910.09250021
1x381x39ep4_off3.3901011
1x38Ligep4_off3.9101010
1x392x60ep4_off3.501011
1x392x61ep4_off4.23501012
1x39LigShared3.3755.4851010
1x427x47ep4_off4.3700012
1x432x57Shared15.8513.21250021
2x503x39ep4_off20.2504222
2x523x35Shared6.72.74250021
2x533x35Shared9.038.280021
2x542x57ep4_off3.200011
2x547x46ep4_off5.2500011
2x572x58Shared5.343.1150012
2x60LigShared10.619.41751010
2x64LigShared12.8554.53750110
3x313x35Shared5.023.76756021
3x32E2x51ep4_off6.0900112
3x32LigShared4.744.40250110
3x343x35Shared12.866.9650021
3x397x45ep4_off11.4504022
3x397x46ep4_off10.0904021
E2.Q164E2.W169Shared22.4520.80751121
E2.Q164E2x51ep4_off4.09501122
E2.P166E2.T168Shared8.746.99250121
E2.T168E2.W169Shared4.853.63750111
E2.W169E2x51Shared5.015.01251112
7x35E2.W169ep4_off5.6901111
7x38E2.W169Shared13.50510.56751111
E2.W169LigShared7.8057.44251110
6x477x45Shared7.0855.9050022
7x327x35Shared13.0453.7750121
7x357x39Shared4.259.111111
7x35LigShared4.746.41251110
7x38LigShared10.7453.53751110
7x39LigShared38.6857.04251110
7x42LigShared12.85150010
7x43Ligep4_off3.0600010
2x563x32Shared2.983.35250111
1x352x64ep4_off2.7800021
3x365x43ep4_off2.5400012
1x42Ligep4_off1.9400010
1x387x39ep4_on06.5751011
1x427x39ep4_on04.030011
2x507x46ep4_on06.84254221
2x54Ligep4_on04.8950010
2x563x31ep4_on05.3750112
2x56Ligep4_on06.630110
2x57Ligep4_on05.27750010
2x63E2.T168ep4_on03.53250021
2x64E2.T168ep4_on010.9250111
3x36Ligep4_on07.2450010
E2.P166E2.W169ep4_on04.72750121
E2.T168Ligep4_on05.04750110
7x457x46ep4_on03.66754021
7x46Ligep4_on04.88250010
7x35E2.P166ep4_on03.2851112
6x477x43ep4_on03.41750021
7x437x47ep4_on03.07250012
3x35Ligep4_on06.720010
1x432x61ep4_on02.51250022
1x351x37ep4_on02.1850022
7x437x48ep4_on01.86250012
1x371x38ep4_on01.520021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ep4_off 5YWY-EP4-ONO-AE3-208
5YHL-EP4-PubChem 135121352
ep4_on 7D7M-EP4-Dinoprostone-Gs/&β;1/&γ;1
8GCP-EP4-PGE2-Gi1/&β;1/&γ;2
8GD9-EP4-Rivenprost-Gs/&β;1/&γ;2
8GDA-EP4-L902688-Gs/&β;1/&γ;2
Network Difference
Value ep4_off ep4_on
Imin 3.06 3.01
Number of Linked Nodes 252 280
Number of Specific Nodes 2 (0.79%) 30  (10.71%)
Number of Shared Nodes 250 (99.21%) 250  (89.29%)
Number of Links 279 305
Number of Specific Links 131 (46.95%) 157  (51.48%)
Number of Shared Links 148 (53.05%) 148  (48.52%)
Number of Hubs 34 33
Number of Specific Hubs 18 (52.94%) 17  (51.52%)
Number of Shared Hubs 16 (47.06%) 16  (48.48%)
Average % Shared Neighbours (Jaccard) 37.30
Average % Shared Neighbours (Otsuka) 45.75
Average % Shared Neighbours (Overlap Coefficient) 53.40
Average % Shared Cliques (k3-6) 78.95
Graphlets Similarity 0.580809
Paths Difference
Value ep4_off ep4_on
Number Of Nodes in MetaPath 66 96
Specific Nodes in MetaPath 29 (43.94%) 59  (61.46%)
Shared Nodes in MetaPath 250 (99.21%) 250  (99.21%)
Number Of Links MetaPath 65 101
Specific Links in MetaPath 46 (70.77%) 82  (81.19%)
Shared Links in MetaPath 148 (53.05%) 148  (53.05%)
Number of Shortest Paths 36868 53745
Length Of Smallest Path 3 3
Average Path Length 14.6569 14.1809
Length of Longest Path 30 35
Minimum Path Strength 1.395 0.525
Average Path Strength 6.66117 4.64625
Maximum Path Strength 25.77 15.6875
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.920838 0.920763
Maximum Path Correlation 0.99 0.9925
Minimum % Of Corr. Nodes 4 3.0303
Average % Of Corr. Nodes 43.9585 47.3206
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 33.8732 35.453
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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