Orange: nodes, hubs and links specific of ffa3_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ffa3_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ffa3_on_allo Avg Int. Strength ffa3_on Avg Int. Strength ffa3_on_allo Num Of Links ffa3_on Num Of Links ConSurf
11x39 ffa3_on_allo5.3783.87667537
21x57 ffa3_on_allo5.2425.8527
32x47 ffa3_on_allo3.75253.00667438
42x60 ffa3_on_allo6.1625.91333536
53x51 ffa3_on_allo5.53257.63333438
64x46 ffa3_on_allo2.73753.72667437
7E2x50 ffa3_on_allo7.56.25429
85x461 ffa3_on_allo4.74756.24333436
95x47 ffa3_on_allo11.18513.5733438
105x50 ffa3_on_allo2.79252.47667439
115x51 ffa3_on_allo3.8056.255426
125x65 ffa3_on_allo4.18253.2438
137x33 ffa3_on_allo3.7354.75667434
147x36 ffa3_on_allo5.845.05415
157x53 ffa3_on_allo6.02411.72519
16Allo2 ffa3_on_allo10.240801200
171x56 Shared4.7955.6025447
182x42 Shared3.6664.9325547
192x43 Shared5.0656.2475448
202x45 Shared5.93756.3025449
212x53 Shared6.32255.06446
223x30 Shared6.92255.578455
233x31 Shared5.4255.1625445
243x32 Shared7.3255.8446
253x37 Shared8.2166.075547
263x42 Shared9.37.228457
274x50 Shared7.786.93449
28E2.Q177 Shared6.6987.335544
295x40 Shared11.28758.67333465
305x58 Shared7.906676.412658
316x45 Shared6.7457.4375449
326x48 Shared4.9483.54548
33Lig Shared12.325612.3643970
341x32 ffa3_on4.583336.99346
352x39 ffa3_on3.8953.0625247
362x54 ffa3_on3.5753.758255
372x57 ffa3_on3.713333.94348
382x59 ffa3_on4.4656.675246
39E1x50 ffa3_on9.503335.294359
403x33 ffa3_on14.97511.165245
413x38 ffa3_on9.383337.45346
423x49 ffa3_on7.6556.2225248
433x54 ffa3_on4.473.45248
44I2x52 ffa3_on9.1366711.6345
45I2x56 ffa3_on5.106677.76344
465x36 ffa3_on3.644.685144
475x43 ffa3_on7.463334.795346
486x51 ffa3_on11.845.54714376
496x55 ffa3_on10.64679.66345
50E3.P255 ffa3_on2.823334.9725343
517x42 ffa3_on4.0653.4825246
   
Orange: nodes, hubs and links specific of ffa3_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ffa3_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ffa3_on_allo Recurrence ffa3_on Recurrence ffa3_on_allo Hub1? ffa3_on Hub1? ffa3_on_allo Hub2? ffa3_on Hub2? ConSurf1 ConSurf2
11x33 1x36 ffa3_on_allo10.38763.27777NoNoNoNo25
21x36 1x40 ffa3_on_allo14.43913.27777NoNoNoNo55
31x40 2x61 ffa3_on_allo18.42970NoNoNoNo57
41x39 2x61 ffa3_on_allo20.40210YesNoNoNo77
51x42 7x42 ffa3_on_allo10.34195.50686NoNoNoYes76
62x57 2x58 ffa3_on_allo10.22015.84629NoYesNoNo89
72x53 3x32 ffa3_on_allo84.4490YesYesYesYes66
82x50 7x49 ffa3_on_allo70.07841.14494NoNoNoNo99
97x49 Allo2 ffa3_on_allo72.69060NoNoYesNo90
107x53 Allo2 ffa3_on_allo88.78230YesNoYesNo90
112x47 7x53 ffa3_on_allo20.79810YesNoYesNo89
121x54 2x47 ffa3_on_allo13.06072.81676NoNoYesNo78
131x54 2x51 ffa3_on_allo10.92072.81676NoNoNoNo77
141x57 7x53 ffa3_on_allo37.3620YesNoYesNo79
151x52 1x56 ffa3_on_allo11.78130NoNoYesYes67
161x52 8x54 ffa3_on_allo10.05252.78636NoNoNoNo66
172x43 7x53 ffa3_on_allo25.56551.23613YesYesYesNo89
181x57 2x44 ffa3_on_allo10.69230YesNoNoNo76
192x39 2x43 ffa3_on_allo14.88847.20401NoYesYesYes78
202x44 I1.L43 ffa3_on_allo16.00792.38107NoNoNoNo65
21I1.L43 I1.P47 ffa3_on_allo12.84754.5899NoNoNoNo56
222x53 3x35 ffa3_on_allo17.63775.77537YesYesNoNo68
232x49 3x35 ffa3_on_allo16.91420NoNoNoNo88
242x49 4x50 ffa3_on_allo14.41630NoNoYesYes89
252x45 4x50 ffa3_on_allo10.90552.08217YesYesYesYes99
262x46 3x42 ffa3_on_allo13.68522.90288NoNoYesYes97
273x32 3x33 ffa3_on_allo27.09620YesYesNoYes65
283x33 Lig ffa3_on_allo26.76114.35179NoYesYesYes50
294x57 Lig ffa3_on_allo27.9110NoNoYesYes60
303x30 4x57 ffa3_on_allo22.09280YesYesNoNo56
313x30 3x31 ffa3_on_allo10.50197.70049YesYesYesYes55
322x60 3x28 ffa3_on_allo19.60250YesNoNoNo65
332x59 3x28 ffa3_on_allo15.39871.64142NoYesNoNo65
342x59 3x24 ffa3_on_allo13.24353.25244NoYesNoNo66
35E1x50 E2x50 ffa3_on_allo39.81421.63635NoYesYesNo99
363x37 Lig ffa3_on_allo36.57760YesYesYesYes70
373x36 3x37 ffa3_on_allo56.75120NoNoYesYes77
383x36 6x48 ffa3_on_allo57.46717.12802NoNoYesYes78
395x54 Allo2 ffa3_on_allo38.23010NoNoYesNo80
403x47 5x54 ffa3_on_allo37.0041.41851NoNoNoNo98
413x48 5x57 ffa3_on_allo24.40792.83196NoNoNoNo66
423x48 5x53 ffa3_on_allo20.96571.41851NoNoNoNo66
435x49 5x53 ffa3_on_allo17.50820NoNoNoNo56
445x49 5x50 ffa3_on_allo14.03551.61609NoNoYesNo59
455x58 Allo2 ffa3_on_allo61.89170YesYesYesNo80
463x51 5x57 ffa3_on_allo48.38179.7472YesNoNoNo86
473x51 3x55 ffa3_on_allo13.74614.23527YesNoNoNo87
483x51 5x60 ffa3_on_allo10.4794.23527YesNoNoNo84
493x51 3x52 ffa3_on_allo22.22980YesNoNoNo85
503x52 I2x52 ffa3_on_allo18.90951.41851NoNoNoYes55
515x61 5x65 ffa3_on_allo18.10980NoNoYesNo88
52I2x52 I2x56 ffa3_on_allo10.89034.09849NoYesNoYes54
53E2.E154 E2x50 ffa3_on_allo37.73510NoNoYesNo49
54E2.E154 E2.F173 ffa3_on_allo34.19391.88459NoNoNoNo45
55E2.Q177 E2.R174 ffa3_on_allo10.30390YesYesNoNo46
565x33 E2.F173 ffa3_on_allo12.19250NoNoNoNo15
575x33 5x37 ffa3_on_allo10.5780.0151983NoNoNoNo12
586x45 Allo2 ffa3_on_allo55.76120YesYesYesNo90
596x45 6x48 ffa3_on_allo53.5450YesYesYesYes98
605x65 6x30 ffa3_on_allo14.90375.75004YesNoNoNo86
617x52 Allo2 ffa3_on_allo10.13630NoNoYesNo80
627x36 7x37 ffa3_on_allo20.70671.71235YesNoNoNo56
637x33 7x36 ffa3_on_allo12.60380YesNoYesNo45
642x57 2x60 ffa3_on_allo11.41570NoYesYesNo86
652x46 7x53 ffa3_on_allo13.70040NoNoYesNo99
661x39 2x60 Shared39.418236.3392YesNoYesNo76
671x39 7x42 Shared12.306811.3684YesNoNoYes76
682x60 3x32 Shared10051.6085YesNoYesYes66
692x53 7x46 Shared68.40312.417YesYesNoNo68
702x50 7x46 Shared69.65222.0173NoNoNoNo98
711x57 8x50 Shared31.338128.2233YesNoNoNo78
721x56 8x50 Shared24.28623.5017YesYesNoNo78
732x37 2x39 Shared12.938822.5797NoNoNoYes77
742x45 4x46 Shared13.662395.9978YesYesYesNo97
752x42 4x46 Shared10.57894.6299YesYesYesNo77
762x42 3x46 Shared12.877935.9947YesYesNoNo78
772x43 3x46 Shared13.966924.2819YesYesNoNo88
782x60 E1x50 Shared45.099417.549YesNoNoYes69
793x37 5x461 Shared16.053674.9734YesYesYesNo76
806x51 7x37 Shared16.167818.2076NoYesNoNo66
813x47 5x57 Shared74.030913.7748NoNoNoNo96
823x47 5x58 Shared40.19516.4091NoNoYesYes98
835x58 5x61 Shared21.597723.679YesYesNoNo88
84E2.F173 E2.Q177 Shared20.089918.7446NoNoYesYes54
853x37 6x51 Shared14.225972.4454YesYesNoYes76
861x32 2x65 ffa3_on2.101914.4486NoYesNoNo63
871x35 2x65 ffa3_on023.4358NoNoNoNo53
881x35 1x39 ffa3_on8.0648926.2121NoNoYesNo57
892x57 3x32 ffa3_on046.7754NoYesYesYes86
902x54 2x57 ffa3_on023.6486NoYesNoYes58
912x53 2x57 ffa3_on016.9968YesYesNoYes68
921x50 2x50 ffa3_on019.4995NoNoNoNo99
932x54 7x46 ffa3_on1.1042612.2448NoYesNoNo58
943x32 7x38 ffa3_on9.8621684.7763YesYesNoNo66
956x51 7x38 ffa3_on085.592NoYesNoNo66
963x41 5x461 ffa3_on4.33326100NoNoYesNo66
973x41 4x49 ffa3_on2.1704499.7062NoNoNoNo66
983x42 4x49 ffa3_on098.7639YesYesNoNo76
992x45 3x42 ffa3_on6.5874794.7363YesYesYesYes97
1001x57 2x43 ffa3_on3.3051629.2619YesNoYesYes78
1011x56 8x54 ffa3_on018.618YesYesNoNo76
1022x39 3x46 ffa3_on010.882NoYesNoNo78
1032x42 3x49 ffa3_on4.3865758.088YesYesNoYes78
1042x39 3x49 ffa3_on018.6585NoYesNoYes78
1052x37 2x40 ffa3_on7.5470313.3036NoNoNoNo77
1063x49 I2x53 ffa3_on053.792NoYesNoNo85
107I2x52 I2x53 ffa3_on011.9814NoYesNoNo55
1083x34 4x57 ffa3_on4.2418716.9056NoNoNoNo56
1093x30 3x34 ffa3_on015.5023YesYesNoNo55
1103x37 4x57 ffa3_on014.0787YesYesNoNo76
1116x51 Lig ffa3_on3.2670820.0567NoYesYesYes60
1125x43 Lig ffa3_on1.8048926.2273NoYesYesYes60
1133x53 I2x53 ffa3_on2.0790544.5615NoNoNoNo85
1143x53 3x54 ffa3_on043.5078NoNoNoYes88
1153x54 5x61 ffa3_on1.713528.8262NoYesNoNo88
1166x51 6x55 ffa3_on019.1651NoYesNoYes65
1175x40 6x55 ffa3_on0.083771215.7911YesYesNoYes55
1185x36 5x40 ffa3_on2.1247433.0564NoYesYesYes45
1195x36 E2.F173 ffa3_on022.2605NoYesNoNo45
1205x40 Lig ffa3_on4.1504835.6401YesYesYesYes50
121E2.D176 E2.Q177 ffa3_on2.101911.3177NoNoYesYes44
1226x51 6x52 ffa3_on014.864NoYesNoNo68
1235x47 6x52 ffa3_on3.32813.3897YesNoNoNo88
1243x54 5x65 ffa3_on0.060924511.3785NoYesYesNo88
1257x54 8x54 ffa3_on6.0924514.7475NoNoNoNo66
1267x54 8x51 ffa3_on4.0743313.4455NoNoNoNo68
1278x48 8x51 ffa3_on2.0409712.1232NoNoNoNo58
1286x33 8x48 ffa3_on010.7807NoNoNoNo75
1296x50 7x40 ffa3_on0.0076155712.8375NoNoNoNo98
1306x50 7x37 ffa3_on015.3909NoNoNoNo96
1315x43 5x461 ffa3_on025.3052NoYesYesNo66

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x303x34ffa3_on6.4900022
3x323x36ffa3_on6.2800022
3x327x38Shared3.657.310022
3x334x57ffa3_on2.7901011
3x33E2x51ffa3_on11.3501012
3x336x51ffa3_on3.0901011
3x33LigShared27.4324.591010
3x344x57Shared6.765.070021
3x374x57ffa3_on4.0301311
3x375x43Shared3.598.381311
3x375x461Shared11.728.211312
3x376x51Shared4.9613.91311
4x565x43Shared6.573.940021
4x60LigShared11.7410.610010
5x365x40Shared12.153.641021
5x406x55Shared14.6712.411311
5x40E3.P255ffa3_on2.8801312
5x407x34Shared8.537.461311
5x40LigShared12.3121.641310
5x435x461ffa3_on4.2401312
5x43LigShared4.7810.071310
5x446x55Shared4.397.320021
6x516x52ffa3_on3.4901312
6x516x55ffa3_on10.8901311
6x517x37Shared3.796.311312
6x517x38ffa3_on4.6901312
6x51LigShared7.9215.311310
6x55LigShared8.6912.211310
7x34LigShared13.685.771310
5x406x58ffa3_on1.501312
3x304x57ffa3_on_allo09.780021
3x323x33ffa3_on_allo05.360021
3x363x37ffa3_on_allo03.630021
3x37Ligffa3_on_allo06.961310
4x565x461ffa3_on_allo05.140022
4x57Ligffa3_on_allo03.770010
7x377x38ffa3_on_allo02.980022
7x34E3.P255ffa3_on_allo02.881312
6x58E3.P255ffa3_on_allo02.030022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ffa3_on_allo 8J20-FFA3-Valeric acid-AR420626-Gi1/&β;1/&γ;2
ffa3_on 8J21-FFA3-Butyric acid-Gi1/&β;1/&γ;2
Network Difference
Value ffa3_on_allo ffa3_on
Imin 2.95 2.77
Number of Linked Nodes 250 257
Number of Specific Nodes 7 (2.80%) 14  (5.45%)
Number of Shared Nodes 243 (97.20%) 243  (94.55%)
Number of Links 280 285
Number of Specific Links 98 (35.00%) 103  (36.14%)
Number of Shared Links 182 (65.00%) 182  (63.86%)
Number of Hubs 33 35
Number of Specific Hubs 16 (48.48%) 18  (51.43%)
Number of Shared Hubs 17 (51.52%) 17  (48.57%)
Average % Shared Neighbours (Jaccard) 50.17
Average % Shared Neighbours (Otsuka) 60.37
Average % Shared Neighbours (Overlap Coefficient) 70.22
Average % Shared Cliques (k3-6) 78.66
Graphlets Similarity 0.598997
Paths Difference
Value ffa3_on_allo ffa3_on
Number Of Nodes in MetaPath 83 63
Specific Nodes in MetaPath 47 (56.63%) 27  (42.86%)
Shared Nodes in MetaPath 243 (97.20%) 243  (97.20%)
Number Of Links MetaPath 85 66
Specific Links in MetaPath 65 (76.47%) 46  (69.70%)
Shared Links in MetaPath 182 (65.00%) 182  (65.00%)
Number of Shortest Paths 36265 42254
Length Of Smallest Path 3 3
Average Path Length 11.7774 14.3576
Length of Longest Path 25 34
Minimum Path Strength 1.345 1.37
Average Path Strength 6.24705 5.74064
Maximum Path Strength 23.17 20.845
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.923973 0.930241
Maximum Path Correlation 0.99 1
Minimum % Of Corr. Nodes 4.54545 3.44828
Average % Of Corr. Nodes 50.7827 48.5682
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 42.6741 41.5795
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download ffa3_on_ortoallo.zip<



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