Orange: nodes, hubs and links specific of ffa4_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ffa4_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ffa4_on_allo Avg Int. Strength ffa4_on Avg Int. Strength ffa4_on_allo Num Of Links ffa4_on Num Of Links ConSurf
1NT.F27 ffa4_on_allo7.6855.15429435
2NT.F28 ffa4_on_allo8.465.57857438
31x60 ffa4_on_allo2.69750.942857436
42x46 ffa4_on_allo5.6664.78952539
52x50 ffa4_on_allo9.2857.50476439
62x53 ffa4_on_allo6.546.43667437
72x61 ffa4_on_allo4.05253.14286436
8E1x52 ffa4_on_allo5.41254.74929426
93x32 ffa4_on_allo6.054.82071427
103x33 ffa4_on_allo6.0954.56809435
113x50 ffa4_on_allo5.3355.09762439
124x61 ffa4_on_allo5.64754.96476435
134x64 ffa4_on_allo8.39756.91286435
144x65 ffa4_on_allo9.3649.83952535
15E2.V179 ffa4_on_allo3.48751.77524435
16E2x50 ffa4_on_allo7.4359.57571429
17E2x52 ffa4_on_allo6.8511.0793525
18E2.I201 ffa4_on_allo4.5850.484286414
195x43 ffa4_on_allo6.9859.46857635
205x461 ffa4_on_allo6.5987.65191536
216x48 ffa4_on_allo9.2433311.6848639
22E3.I298 ffa4_on_allo3.873.44071420
237x42 ffa4_on_allo4.7927.09191537
247x53 ffa4_on_allo5.7155.70476439
25Alloh124 ffa4_on_allo4.283330600
26NT.F25 Shared6.4564.24286575
27NT.D30 Shared5.79753.45393446
281x50 Shared8.637.09607449
292x47 Shared5.726674.56029659
302x57 Shared6.8656.18429447
31E1x50 Shared8.303337.71743659
323x29 Shared10.3256.11214645
333x51 Shared4.3444.45714548
344x50 Shared7.0426.975549
35E2.W198 Shared10.737.926557
365x36 Shared6.517.69543555
375x39 Shared11.49756.54143466
385x40 Shared9.30757.15571445
395x58 Shared7.9185.84405569
40I3.Y247 Shared2.9753.77786444
416x45 Shared6.5045.07229559
426x47 Shared6.34255.51536448
437x34 Shared6.0054.17714464
447x35 Shared13.0910.0971444
457x52 Shared3.20252.4325448
46Lig Shared8.431335.8558215130
471x27 ffa4_on12.13.49679240
481x35 ffa4_on9.916677.62857345
491x39 ffa4_on5.806673.94143346
502x45 ffa4_on8.876675.36771359
513x49 ffa4_on3.492.47952168
523x56 ffa4_on7.333331.23452365
534x42 ffa4_on2.693331.84214346
545x34 ffa4_on3.556671.90929343
555x47 ffa4_on11.2455.50143248
565x60 ffa4_on5.762.89643145
575x69 ffa4_on2.14.535344
585x72 ffa4_on1.861.89893245
596x26 ffa4_on01.97179044
607x54 ffa4_on7.061.98107247
61NT.R24 ffa4_on6.3653.77771255
62NT.K32 ffa4_on1.742.82929143
636x64 ffa4_on02.24429050
   
Orange: nodes, hubs and links specific of ffa4_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ffa4_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ffa4_on_allo Recurrence ffa4_on Recurrence ffa4_on_allo Hub1? ffa4_on Hub1? ffa4_on_allo Hub2? ffa4_on Hub2? ConSurf1 ConSurf2
1E2.I197 E2.R178 ffa4_on_allo14.22582.7773NoNoNoNo44
24x64 E2.R178 ffa4_on_allo19.84110YesNoNoNo54
34x64 E2.W198 ffa4_on_allo28.18145.9742YesNoYesYes57
4E2.W198 E2x52 ffa4_on_allo19.79151.99235YesYesYesNo75
56x58 Lig ffa4_on_allo24.12167.91802NoNoYesYes50
6E2x52 Lig ffa4_on_allo31.19310YesNoYesYes50
75x36 E2.W198 ffa4_on_allo15.09180.27402YesYesYesYes57
87x31 NT.F25 ffa4_on_allo20.56370NoNoYesYes45
93x29 4x65 ffa4_on_allo20.33211.54136YesYesYesNo55
104x65 E2x52 ffa4_on_allo19.68670.205515YesNoYesNo55
113x32 7x42 ffa4_on_allo22.25160YesNoYesNo77
123x32 Lig ffa4_on_allo22.42823.04847YesNoYesYes70
13NT.P26 NT.S29 ffa4_on_allo10.03361.39008NoNoNoNo59
147x31 NT.D30 ffa4_on_allo19.51579.64492NoNoYesYes46
151x39 2x61 ffa4_on_allo15.18568.04932NoYesYesNo66
161x46 2x54 ffa4_on_allo19.6261.49569NoNoNoNo86
171x46 7x46 ffa4_on_allo16.16191.94953NoNoNoNo89
182x46 2x50 ffa4_on_allo34.15520YesNoYesNo99
193x43 6x45 ffa4_on_allo53.55510NoNoYesYes89
206x48 Lig ffa4_on_allo1000YesNoYesYes90
211x50 2x51 ffa4_on_allo10.91621.16458YesYesNoNo97
222x42 4x46 ffa4_on_allo10.41980NoNoNoNo77
232x45 4x46 ffa4_on_allo12.11871.22452NoYesNoNo97
242x53 7x41 ffa4_on_allo10.59630YesNoNoNo78
256x48 7x41 ffa4_on_allo12.10770YesNoNoNo98
26E1x50 E1x52 ffa4_on_allo13.89496.174YesYesYesNo96
273x25 E1x50 ffa4_on_allo13.68537.68967NoNoYesYes99
283x25 4x65 ffa4_on_allo15.89170NoNoYesNo95
29E1x50 E2x50 ffa4_on_allo13.66321.53565YesYesYesNo99
304x65 E2x50 ffa4_on_allo24.98210YesNoYesNo59
315x461 Lig ffa4_on_allo14.93740YesNoYesYes60
323x40 5x50 ffa4_on_allo11.24724.74967NoNoNoNo89
333x51 5x61 ffa4_on_allo18.04295.01513YesYesNoNo88
343x51 3x56 ffa4_on_allo12.71440YesYesNoYes85
355x36 E2.I201 ffa4_on_allo12.35040YesYesYesNo54
366x52 Lig ffa4_on_allo13.85070NoNoYesYes70
376x34 6x38 ffa4_on_allo12.81373.45664NoNoNoNo88
385x65 6x34 ffa4_on_allo14.50161.48427NoNoNoNo88
395x61 5x65 ffa4_on_allo16.27780NoNoNoNo88
407x30 7x32 ffa4_on_allo11.15891.18171NoNoNoNo42
417x32 NT.D30 ffa4_on_allo12.50480NoNoYesYes26
426x58 NT.F25 ffa4_on_allo21.23676.86191NoNoYesYes55
432x46 7x53 ffa4_on_allo11.24170YesNoYesNo99
44NT.F25 NT.P26 Shared11.423720.7284YesYesNoNo55
455x36 Lig Shared28.716418.5334YesYesYesYes50
463x29 Lig Shared22.301321.4363YesYesYesYes50
472x53 7x42 Shared26.736253.2254YesNoYesNo77
482x53 Lig Shared24.138151.5299YesNoYesYes70
491x39 7x35 Shared19.350232.5569NoYesYesYes64
501x39 2x57 Shared34.568941.1943NoYesYesYes67
512x57 7x42 Shared44.602679.9652YesYesYesNo77
521x43 2x57 Shared24.027892.7271NoNoYesYes67
531x43 2x54 Shared19.581993.7546NoNoNoNo66
542x50 7x46 Shared15.84294.511YesNoNoNo99
552x46 3x43 Shared48.3479100YesNoNoNo98
563x40 6x45 Shared89.580222.7579NoNoYesYes89
573x40 6x48 Shared95.796825.4638NoNoYesNo89
581x50 2x50 Shared35.451525.0813YesYesYesNo99
591x50 2x47 Shared21.203618.8132YesYesYesYes99
602x47 7x54 Shared11.605712.3394YesYesNoYes97
612x45 3x42 Shared29.687242.1505NoYesNoNo98
622x46 3x42 Shared31.115942.3674YesNoNoNo98
632x45 4x50 Shared18.699340.6719NoYesYesYes99
643x50 7x53 Shared12.808255.0437YesNoYesNo99
653x47 5x54 Shared33.509812.4336NoNoNoNo88
665x54 6x45 Shared35.021217.3574NoNoYesYes89
673x47 5x57 Shared27.861445.7812NoNoNoNo85
683x51 5x57 Shared34.988143.3779YesYesNoNo85
696x47 7x45 Shared15.643412.9046YesYesNoNo89
706x48 7x45 Shared17.336926.3373YesNoNoNo99
715x62 6x38 Shared11.015544.2941NoNoNoNo68
723x50 5x58 Shared10.579744.962YesNoYesYes99
732x64 7x35 ffa4_on5.852523.5143NoNoYesYes44
742x54 7x46 ffa4_on092.4159NoNoNoNo69
752x50 7x49 ffa4_on0.3750997.0257YesNoNoNo99
762x46 7x49 ffa4_on1.2852370.1661YesNoNoNo99
773x43 7x53 ffa4_on4.3080199.5347NoNoYesNo89
783x46 3x50 ffa4_on0.20409316.1072NoNoYesNo89
792x42 3x46 ffa4_on015.0425NoNoNoNo78
802x42 3x49 ffa4_on012.8789NoNoNoYes78
815x43 Lig ffa4_on6.8398733.6587YesNoYesYes50
825x43 5x461 ffa4_on0.87704840.7119YesNoYesNo56
833x37 5x461 ffa4_on1.5665540.3009NoNoYesNo66
843x37 4x53 ffa4_on040.2609NoNoNoNo68
853x38 4x53 ffa4_on1.8423540.2381NoNoNoNo78
863x38 4x50 ffa4_on5.438840.2152NoNoYesYes79
873x28 3x29 ffa4_on021.0424NoNoYesYes65
883x28 E1x50 ffa4_on018.0796NoNoYesYes69
892x64 NT.D30 ffa4_on8.9359623.2431NoNoYesYes46
90NT.D30 NT.K32 ffa4_on010.5126YesYesNoYes63
917x45 7x49 ffa4_on033.8728NoNoNoNo99
923x47 5x58 ffa4_on4.5065935.7424NoNoYesYes89
936x41 7x53 ffa4_on044.3369NoNoYesNo89
945x58 6x41 ffa4_on3.4309742.2675YesYesNoNo98
953x51 5x60 ffa4_on1.858914.9826YesYesNoYes85
965x40 Lig ffa4_on5.300919.2242YesYesYesYes50
975x39 5x43 ffa4_on3.44212.2909YesYesYesNo65
985x36 6x59 ffa4_on1.825815.4821YesYesNoNo54
995x37 6x59 ffa4_on031.9233NoNoNoNo44
1005x33 5x37 ffa4_on025.0271NoNoNoNo04
1015x33 5x34 ffa4_on019.0301NoNoNoYes03
1025x32 5x34 ffa4_on010.4698NoNoNoYes03
1035x40 6x59 ffa4_on1.6327419.895YesYesNoNo54
1045x58 6x38 ffa4_on049.3007YesYesNoNo98
1055x62 6x35 ffa4_on5.543636.8756NoNoNoNo67
1066x31 6x35 ffa4_on034.9946NoNoNoNo77
1075x69 6x31 ffa4_on033.5959NoYesNoNo47
1087x38 7x42 ffa4_on5.9021526.4286NoNoYesNo57
1097x34 7x38 ffa4_on2.752524.5019YesYesNoNo45
1107x34 NT.F25 ffa4_on2.4711828.5837YesYesYesYes45
111E2.I193 NT.P26 ffa4_on018.1195NoNoNoNo45
112E2.I193 NT.R24 ffa4_on011.3404NoNoNoYes45
113E3.I298 NT.F25 ffa4_on012.0255YesNoYesYes05
1145x69 I3.Y247 ffa4_on024.559NoYesYesYes44
1156x23 I3.Y247 ffa4_on0.27580114.6372NoNoYesYes24
1166x57 E3.I298 ffa4_on2.8297210.9779NoNoYesNo50
1173x51 3x55 ffa4_on021.4906YesYesNoNo86
1183x55 3x56 ffa4_on5.4553519.0301NoNoNoYes65

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x533x35Shared6.982869.250012
2x537x42Shared8.881437.50012
2x53LigShared3.445714.220010
3x283x29ffa4_on3.6528600021
3x294x65Shared13.164318.220112
3x29LigShared3.9585711.810110
3x32LigShared6.881439.790110
3x334x61Shared5.894285.90111
3x33LigShared4.6911.230110
3x36Ligffa4_on3.4400010
3x375x461Shared6.172868.940121
3x406x48Shared12.078616.440021
4x525x461Shared7.805712.330021
4x605x39Shared9.8428612.160122
4x614x65ffa4_on3.3057100112
4x615x39ffa4_on5.6942900112
4x65E2x52Shared13.04868.530121
E2E2ffa4_on4.1185701022
5x36E2ffa4_on4.6728601112
5x366x59Shared3.977145.31112
5x36LigShared5.185714.591110
5x395x40Shared4.788577.820121
5x395x43Shared13.172911.020121
5x406x55Shared3.45.61111
5x406x59Shared9.3071416.291112
5x40LigShared11.12717.521110
5x435x461Shared8.977149.670111
5x43LigShared6.255719.280110
5x446x52Shared4.168574.610021
5x476x52Shared12.022918.840021
6x487x45Shared19.855719.210012
6x517x41Shared4.9942912.160012
6x51LigShared8.0471418.790010
6x55LigShared8.315.821110
6x58LigShared6.789.890110
7x347x38Shared5.054295.241112
7x34Ligffa4_on3.7901110
7x387x42Shared4.678573.931122
NT.F25NT.F27Shared6.737147.51122
6x58NT.F25Shared4.125715.020112
7x34NT.F25Shared3.827149.651112
3x29NT.F27Shared3.672869.650112
7x34NT.F27ffa4_on5.0528601112
7x34NT.F28Shared4.747145.361112
7x38NT.F28Shared4.682867.871122
E2.W198E2x52Shared9.1110.251111
5x36E2.W198Shared18.0711.991111
5x39E2.W198Shared5.2214.990121
E2.W198Ligffa4_on4.2242901110
5x366x62ffa4_on6.5714301112
3x334x57Shared3.123.360112
3x396x48Shared3.124.850021
4x64E2.W198Shared3.0057111.020021
4x524x56ffa4_on2.8585700022
2x563x32Shared2.763.220021
6x547x34ffa4_on2.5914300021
4x65NT.F27ffa4_on_allo07.50122
E2x52NT.F27ffa4_on_allo06.090112
3x29NT.F28ffa4_on_allo07.50112
2x537x41ffa4_on_allo05.190012
3x293x32ffa4_on_allo07.460111
3x294x61ffa4_on_allo07.310111
3x327x42ffa4_on_allo03.730112
3x335x43ffa4_on_allo03.890111
3x366x48ffa4_on_allo04.220011
3x375x43ffa4_on_allo05.280121
3x415x461ffa4_on_allo08.240021
4x60E2.W198ffa4_on_allo05.40121
4x61E2x52ffa4_on_allo05.540111
4x61Ligffa4_on_allo03.840110
E2x52Ligffa4_on_allo03.840110
5x36E2.I201ffa4_on_allo04.11112
E2.I201E3.N291ffa4_on_allo07.080122
5x36E3.N291ffa4_on_allo06.571112
5x461Ligffa4_on_allo03.810110
6x487x41ffa4_on_allo03.640012
6x48Ligffa4_on_allo07.10010
6x52Ligffa4_on_allo04.940010
6x587x34ffa4_on_allo03.770111
6x516x54ffa4_on_allo03.040012
4x565x43ffa4_on_allo02.770021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ffa4_on_allo 8T3O-FFA4-TUG-891-2Y5-chim(NtGi2L-Gs-CtGq)/&β;1/&γ;2
ffa4_on 8H4K-FFA4-GW9508-chim(NtGi1-Gs-CtGq)/&β;1/&γ;2
8ID9-FFA4 (GPR120)-Eicosapentaenoic acid-Gi1/&β;1/&γ;2
8ID4-FFA4 (GPR120)-Linoleic acid-Gi1/&β;1/&γ;2
8ID6-FFA4 (GPR120)-Oleic acid-Gi1/&β;1/&γ;2
8G59-FFA4 (GPR120)-TUG-891-Gi1/&β;1/&γ;2
8ID3-FFA4 (GPR120)-9-Hydroxystearic acid-Gi1/&β;1/&γ;2
8H4I-FFA4-Doconexent-chim(NtGi1-Gs)/&β;1/&γ;2
Network Difference
Value ffa4_on_allo ffa4_on
Imin 3.62 3.26571
Number of Linked Nodes 274 313
Number of Specific Nodes 5 (1.82%) 44  (14.06%)
Number of Shared Nodes 269 (98.18%) 269  (85.94%)
Number of Links 313 335
Number of Specific Links 124 (39.62%) 146  (43.58%)
Number of Shared Links 189 (60.38%) 189  (56.42%)
Number of Hubs 46 38
Number of Specific Hubs 25 (54.35%) 17  (44.74%)
Number of Shared Hubs 21 (45.65%) 21  (55.26%)
Average % Shared Neighbours (Jaccard) 41.60
Average % Shared Neighbours (Otsuka) 50.18
Average % Shared Neighbours (Overlap Coefficient) 58.87
Average % Shared Cliques (k3-6) 77.94
Graphlets Similarity 0.529297
Paths Difference
Value ffa4_on_allo ffa4_on
Number Of Nodes in MetaPath 67 72
Specific Nodes in MetaPath 26 (38.81%) 31  (43.06%)
Shared Nodes in MetaPath 269 (98.18%) 269  (98.18%)
Number Of Links MetaPath 72 75
Specific Links in MetaPath 43 (59.72%) 46  (61.33%)
Shared Links in MetaPath 189 (60.38%) 189  (60.38%)
Number of Shortest Paths 44760 77118
Length Of Smallest Path 3 3
Average Path Length 10.8419 16.2496
Length of Longest Path 26 32
Minimum Path Strength 1.285 0.415714
Average Path Strength 6.88928 5.36614
Maximum Path Strength 19.44 15.9671
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.939216 0.90479
Maximum Path Correlation 1 0.99
Minimum % Of Corr. Nodes 5.26316 3.44828
Average % Of Corr. Nodes 68.0485 40.8105
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 50.9118 29.2595
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download ffa4_on_ortoallo.zip<



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