Orange: nodes, hubs and links specific of ghrelin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ghrelin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ghrelin_off Avg Int. Strength ghrelin_on Avg Int. Strength ghrelin_off Num Of Links ghrelin_on Num Of Links ConSurf
12x63 ghrelin_off5033.3333435
22x65 ghrelin_off00434
32x66 ghrelin_off00524
4E1x49 ghrelin_off00514
5E1x50 ghrelin_off5066.6667437
63x39 ghrelin_off5033.3333439
73x50 ghrelin_off500429
83x52 ghrelin_off00435
9E2x52 ghrelin_off500524
105x54 ghrelin_off5033.3333438
115x66 ghrelin_off00414
126x44 ghrelin_off100100439
136x58 ghrelin_off033.3333424
141x60 Shared5066.6667555
152x42 Shared100100758
162x54 Shared100100656
172x57 Shared066.6667547
182x60 Shared10066.6667446
193x28 Shared10066.6667444
203x29 Shared5066.6667444
213x30 Shared00446
223x51 Shared100100568
235x47 Shared10033.3333548
245x58 Shared50100469
256x48 Shared100100768
266x51 Shared10066.6667446
276x55 Shared066.6667546
287x38 Shared10033.3333555
297x41 Shared50100547
307x42 Shared100100557
317x53 Shared10066.6667559
328x50 Shared1000468
33Lig Shared10010010200
341x31 ghrelin_on00243
351x43 ghrelin_on00347
361x47 ghrelin_on00346
372x50 ghrelin_on066.6667349
382x52 ghrelin_on00347
39E1x52 ghrelin_on00346
403x43 ghrelin_on033.3333248
413x46 ghrelin_on00348
423x56 ghrelin_on00246
434x50 ghrelin_on5066.6667359
444x61 ghrelin_on066.6667144
45E2.T195 ghrelin_on00343
46E2x51 ghrelin_on00343
475x39 ghrelin_on033.3333245
485x61 ghrelin_on500348
496x31 ghrelin_on00245
507x34 ghrelin_on033.3333144
   
Orange: nodes, hubs and links specific of ghrelin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ghrelin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ghrelin_off Recurrence ghrelin_on Recurrence ghrelin_off Hub1? ghrelin_on Hub1? ghrelin_off Hub2? ghrelin_on Hub2? ConSurf1 ConSurf2
1NT.F38 NT.Q36 ghrelin_off13.83210NoNoNoNo00
22x66 NT.Q36 ghrelin_off14.77450YesNoNoNo40
32x65 2x66 ghrelin_off18.74782.5648YesNoYesNo44
41x36 2x65 ghrelin_off21.64171.38699NoNoYesNo64
51x36 2x61 ghrelin_off22.47470NoNoNoNo67
62x61 7x38 ghrelin_off23.12390NoNoYesYes75
72x54 7x46 ghrelin_off12.51426.84402YesYesNoNo69
82x50 7x46 ghrelin_off12.06846.33015NoYesNoNo99
96x48 Lig ghrelin_off86.32830YesYesYesYes80
103x39 6x44 ghrelin_off58.51160YesNoYesNo99
113x39 7x49 ghrelin_off30.26483.00136YesNoNoNo99
127x49 7x53 ghrelin_off28.00440NoNoYesYes99
137x53 8x50 ghrelin_off13.78120YesYesYesYes98
147x54 8x51 ghrelin_off10.95770NoNoNoNo78
152x46 3x42 ghrelin_off81.63152.31924NoNoNoNo98
162x42 3x42 ghrelin_off80.93540YesYesNoNo88
172x39 3x46 ghrelin_off58.10881.60528NoNoNoYes88
182x37 2x39 ghrelin_off16.77290NoNoNoNo78
192x37 2x40 ghrelin_off15.52931.86448NoNoNoNo78
202x40 I1x50 ghrelin_off14.27799.24966NoNoNoNo88
211x60 I1x50 ghrelin_off10.47670YesYesNoNo58
222x39 3x50 ghrelin_off44.32760NoNoYesNo89
232x49 3x39 ghrelin_off26.44010NoNoYesNo89
24E1x49 E1x50 ghrelin_off49.69690YesNoYesNo47
252x59 E1x50 ghrelin_off59.97030NoNoYesNo57
262x59 3x28 ghrelin_off61.56194.1246NoNoYesYes54
272x63 3x28 ghrelin_off34.17540YesNoYesYes54
283x28 3x29 ghrelin_off31.80164.15189YesYesYesYes44
292x49 4x50 ghrelin_off25.25912.09186NoNoNoYes89
306x55 Lig ghrelin_off31.8761.24602YesYesYesYes60
313x33 6x55 ghrelin_off16.69862.70123NoNoYesYes46
323x33 3x37 ghrelin_off13.93386.27558NoNoNoNo46
333x37 5x46 ghrelin_off12.41646.84402NoNoNoNo66
343x46 6x37 ghrelin_off11.75160NoYesNoNo88
355x58 6x37 ghrelin_off10.47671.70077YesYesNoNo98
363x50 6x30 ghrelin_off38.19170YesNoNoNo96
373x54 6x30 ghrelin_off37.46430NoNoNoNo96
383x54 5x61 ghrelin_off29.81891.90086NoNoNoYes98
393x51 3x52 ghrelin_off10.02317.63529YesYesYesNo85
402x67 E1x49 ghrelin_off46.39630NoNoYesNo34
41E2.E197 E2.T195 ghrelin_off14.77850NoNoNoYes43
425x40 6x55 ghrelin_off17.56290NoNoYesYes56
435x47 6x48 ghrelin_off13.71870YesYesYesYes88
446x36 7x53 ghrelin_off11.75160NoNoYesYes89
456x36 7x56 ghrelin_off10.47671.25512NoNoNoNo87
466x59 6x60 ghrelin_off13.27680NoNoNoNo44
472x63 Lig ghrelin_off30.69499.36335YesNoYesYes50
483x29 Lig ghrelin_off38.06265.02501YesYesYesYes40
492x50 3x39 ghrelin_off14.09414.75671NoYesYesNo99
502x54 7x42 Shared19.181918.4038YesYesYesYes67
512x57 7x42 Shared10.63711.5553YesYesYesYes77
527x38 Lig Shared20.980814.2883YesYesYesYes50
536x44 6x48 Shared100100YesNoYesYes98
547x54 8x50 Shared12.287442.0964NoNoYesYes78
557x41 7x42 Shared14.469520.7594YesYesYesYes77
562x53 7x41 Shared11.915816.4075NoNoYesYes77
572x53 3x35 Shared10.453214.3702NoNoNoNo78
583x43 6x44 Shared83.000397.5716NoYesYesNo89
592x46 3x43 Shared82.319811.5416NoNoNoYes98
602x42 3x46 Shared66.98631.096YesYesNoYes88
612x42 4x42 Shared10.187312.5284YesYesNoNo87
624x50 4x54 Shared21.669110.7367NoYesNoNo94
633x30 4x54 Shared17.899213.3561YesYesNoNo64
643x51 5x61 Shared27.511628.3311YesYesNoYes88
652x67 E2.E197 Shared42.696822.0782NoNoNoNo34
66E2.E197 E2x51 Shared26.772520.9459NoNoNoYes43
67E2x51 E2x52 Shared17.034915.8754NoYesYesNo34
685x40 6x59 Shared14.782411.819NoNoNoNo54
696x48 7x41 Shared14.461726.0846YesYesYesYes87
706x51 Lig ghrelin_on1.4039383.8108YesYesYesYes60
716x48 6x51 ghrelin_on092.5284YesYesYesYes86
723x43 7x53 ghrelin_on069.6135NoYesYesYes89
736x40 7x53 ghrelin_on025.9845NoNoYesYes89
746x40 7x52 ghrelin_on018.3993NoNoNoNo88
757x48 7x52 ghrelin_on2.6631715.6708NoNoNoNo78
767x38 7x42 ghrelin_on8.5761214.4156YesYesYesYes57
772x43 7x53 ghrelin_on1.3296343.0196NoNoYesYes89
782x43 7x54 ghrelin_on043.7108NoNoNoNo87
791x56 8x50 ghrelin_on027.9445NoNoYesYes88
801x56 1x60 ghrelin_on026.5075NoNoYesYes85
811x60 I1x49 ghrelin_on1.3335414.6794YesYesNoNo56
82I1x49 I1x50 ghrelin_on012.874NoNoNoNo68
833x46 7x53 ghrelin_on031.9372NoYesYesYes89
842x42 4x45 ghrelin_on1.3335410.764YesYesNoNo86
854x61 Lig ghrelin_on038.1583NoYesYesYes40
863x30 4x61 ghrelin_on037.2397YesYesNoYes64
872x46 7x49 ghrelin_on010.7958NoNoNoNo99
882x52 3x35 ghrelin_on8.9828312.6057NoYesNoNo78
892x60 Lig ghrelin_on3.2067615.7117YesYesYesYes60
902x67 Lig ghrelin_on022.5421NoNoYesYes30
913x30 4x62 ghrelin_on7.9034824.0337YesYesNoNo65
923x26 4x62 ghrelin_on5.2989722.7331NoNoNoNo75
933x22 3x26 ghrelin_on3.9849820.1046NoNoNoNo47
943x22 E2.V184 ghrelin_on1.3335417.4397NoNoNoNo45
953x43 5x54 ghrelin_on052.6648NoYesYesNo88
963x47 5x54 ghrelin_on047.6262NoNoYesNo98
973x47 5x57 ghrelin_on066.1255NoNoNoNo97
983x51 5x57 ghrelin_on5.2989762.9604YesYesNoNo87
993x50 7x53 ghrelin_on010.1592YesNoYesYes99
1003x51 3x56 ghrelin_on016.5211YesYesNoYes86
1013x56 I2x52 ghrelin_on011.055NoYesNoNo65
102E2.N196 E2.V184 ghrelin_on016.0937NoNoNoNo45
103E2.H186 E2.N196 ghrelin_on014.7385NoNoNoNo24
104E2.H186 E2.T195 ghrelin_on9.2917813.3743NoNoNoYes23
1055x36 E2x52 ghrelin_on2.0296414.4566NoNoYesNo34
1065x36 6x59 ghrelin_on013.256NoNoNoNo34
1076x51 6x52 ghrelin_on2.3620523.829YesYesNoNo67
1085x47 6x52 ghrelin_on1.1575620.3683YesYesNoNo87
1095x47 6x49 ghrelin_on8.2319811.8554YesYesNoNo86
1105x61 5x65 ghrelin_on021.1096NoYesNoNo88
1115x65 6x30 ghrelin_on017.799NoNoNoNo86
1125x69 6x30 ghrelin_on015.9527NoNoNoNo36
1135x69 6x31 ghrelin_on014.4293NoNoNoYes35
1147x48 7x51 ghrelin_on010.0136NoNoNoNo76
1157x34 Lig ghrelin_on018.8358NoYesYesYes40
1167x30 7x34 ghrelin_on2.0296413.297NoNoNoYes44
1176x57 7x30 ghrelin_on011.8554NoNoNoNo44
1186x57 7x29 ghrelin_on010.4047NoNoNoNo40
1197x31 Lig ghrelin_on012.7058NoNoYesYes30
1201x28 1x31 ghrelin_on3.5039710.2774NoNoNoYes43
1211x28 7x31 ghrelin_on011.4961NoNoNoNo43
1222x60 7x42 ghrelin_on7.0118515.4252YesYesYesYes67
1235x58 6x40 ghrelin_on011.9827YesYesNoNo98
1243x47 5x58 ghrelin_on2.6631720.0637NoNoYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x537x41Shared6.285.443330021
2x602x63ghrelin_off8.3401111
2x607x38Shared12.547.961111
2x607x42Shared7.4753.451112
2x60LigShared20.9754.686671110
2x617x38ghrelin_off4.2600021
2x633x28ghrelin_off4.27501112
2x633x29ghrelin_off5.25501111
2x63LigShared16.3755.883331110
2x647x38Shared13.3954.870111
3x283x29Shared5.8559.366671021
3x294x65Shared4.39.073331112
3x29LigShared10.8517.33331110
3x32LigShared6.5251.783330010
3x333x37Shared7.8610.10330112
3x334x61ghrelin_off6.83500111
3x336x55Shared5.81510.470111
3x366x48ghrelin_off7.8800021
3x396x44ghrelin_off6.82500222
3x406x44ghrelin_off5.24500022
4x605x39Shared8.3855.033330021
5x395x42Shared4.5652.030112
5x476x48ghrelin_off5.01501021
5x476x52Shared22.0613.95331022
6x446x48Shared7.51515.36670021
6x477x45Shared4.35.740022
6x486x52ghrelin_off11.10501012
6x487x41Shared7.5154.676671011
6x487x45ghrelin_off4.9401012
6x516x52Shared10.185.661112
6x516x55Shared9.08511.761111
6x517x41ghrelin_off6.4301111
6x51LigShared5.054.673331110
6x55LigShared16.6821.23671110
6x586x62Shared4.2857.503336112
7x317x32ghrelin_off7.32500112
7x387x42Shared9.28512.72331112
7x38LigShared4.63510.821110
7x417x42Shared8.7658.943331012
7x41Ligghrelin_off18.1901010
7x31NT.L37ghrelin_off5.32500112
7x31NT.F38ghrelin_off3.51500112
2x67E1x49ghrelin_off13.2100112
E1x49E1x50ghrelin_off12.1600022
5x406x55ghrelin_off5.88500021
6x48Ligghrelin_off9.7301010
6x587x30ghrelin_off3.96506112
5x436x55Shared3.2954.833330021
4x64E2.A204ghrelin_off3.15500112
4x644x65ghrelin_off2.9800112
2x67E2.E197Shared2.8054.490112
6x587x29ghrelin_off2.5106112
7x37Ligghrelin_off2.26500010
7x307x34Shared2.2353.973330021
6x58E2x52ghrelin_off2.16506112
6x62E2x52ghrelin_off2.16506022
E1.R107E1x49ghrelin_off2.1600012
4x645x35Shared2.0752.766670112
2x622x67ghrelin_off1.89500021
6x617x26ghrelin_off0.77500112
1x322x64ghrelin_on03.230021
2x603x28ghrelin_on06.371112
2x632x67ghrelin_on03.773331111
2x63E1x50ghrelin_on071112
2x64Ligghrelin_on08.726670110
2x67Ligghrelin_on05.243330110
E1.R107Ligghrelin_on05.613330010
3x294x61ghrelin_on03.661111
3x304x61ghrelin_on03.354021
3x33Ligghrelin_on014.38670110
3x367x41ghrelin_on06.920021
3x375x43ghrelin_on05.936670022
3x396x48ghrelin_on04.253330221
3x406x48ghrelin_on04.903330021
4x614x65ghrelin_on04.096670112
4x61Ligghrelin_on04.390110
4x645x39ghrelin_on04.710111
4x64Ligghrelin_on05.203330110
5x35E2.A204ghrelin_on03.680022
5x39Ligghrelin_on06.806670110
6x486x51ghrelin_on07.683331011
6x547x34ghrelin_on04.523330021
6x58Ligghrelin_on014.75336110
6x616x62ghrelin_on03.520112
6x61Ligghrelin_on03.896670110
7x31Ligghrelin_on07.386670110
7x34Ligghrelin_on018.90330110
5x436x52ghrelin_on04.183330022
7x347x37ghrelin_on02.980111
1x397x38ghrelin_on02.790021
6x476x48ghrelin_on02.176670021
1x287x31ghrelin_on01.580021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ghrelin_off 6KO5-Ghrelin-PubChem 57400002
7F83-Ghrelin-PF-05190457
ghrelin_on 7NA7-Ghrelin-Ghrelin-27-Gi1/β1/γ2
7F9Z-Ghrelin-GHRP-6-chim(NtGi1-Gs-CtGq)/β1/γ2
7NA8-Ghrelin-PubChem 178024-Gi1/β1/γ2
Network Difference
Value ghrelin_off ghrelin_on
Imin 3.515 3.09
Number of Linked Nodes 295 286
Number of Specific Nodes 16 (5.42%) 7  (2.45%)
Number of Shared Nodes 279 (94.58%) 279  (97.55%)
Number of Links 315 315
Number of Specific Links 143 (45.40%) 143  (45.40%)
Number of Shared Links 172 (54.60%) 172  (54.60%)
Number of Hubs 33 37
Number of Specific Hubs 13 (39.39%) 17  (45.95%)
Number of Shared Hubs 20 (60.61%) 20  (54.05%)
Average % Shared Neighbours (Jaccard) 39.93
Average % Shared Neighbours (Otsuka) 49.43
Average % Shared Neighbours (Overlap Coefficient) 58.68
Average % Shared Cliques (k3-6) 78.57
Graphlets Similarity 0.588066
Paths Difference
Value ghrelin_off ghrelin_on
Number Of Nodes in MetaPath 68 73
Specific Nodes in MetaPath 31 (45.59%) 36  (49.32%)
Shared Nodes in MetaPath 279 (94.58%) 279  (94.58%)
Number Of Links MetaPath 69 75
Specific Links in MetaPath 49 (71.01%) 55  (73.33%)
Shared Links in MetaPath 172 (54.60%) 172  (54.60%)
Number of Shortest Paths 54220 54010
Length Of Smallest Path 3 3
Average Path Length 14.099 12.0615
Length of Longest Path 33 29
Minimum Path Strength 0.7 0.703333
Average Path Strength 6.464 6.08546
Maximum Path Strength 19.5825 16.5217
Minimum Path Correlation 0.7 0.706667
Average Path Correlation 0.92025 0.919249
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.33333 3.84615
Average % Of Corr. Nodes 45.8883 47.3262
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 40.7687 43.6774
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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