Orange: nodes, hubs and links specific of hcar_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of hcar_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner hcar_off Avg Int. Strength hcar_on Avg Int. Strength hcar_off Num Of Links hcar_on Num Of Links ConSurf
11x23 hcar_off00403
21x39 hcar_off1000528
31x50 hcar_off00429
41x57 hcar_off1000637
52x42 hcar_off1000428
62x53 hcar_off1000527
7E1x52 hcar_off1000427
83x29 hcar_off500426
93x36 hcar_off1000437
103x37 hcar_off10015537
113x38 hcar_off500417
123x54 hcar_off00428
13I2x52 hcar_off1000434
14I2x57 hcar_off1000436
154x41 hcar_off00423
16E2x50 hcar_off500429
175x43 hcar_off1000425
185x61 hcar_off00538
196x44 hcar_off1000439
206x48 hcar_off10045638
216x51 hcar_off1000526
226x52 hcar_off1000628
236x55 hcar_off10040726
247x38 hcar_off1000425
257x45 hcar_off1000439
267x52 hcar_off00437
278x50 hcar_off1000628
282x44 Shared10050556
292x64 Shared10095444
30E1x50 Shared10095568
313x42 Shared10050547
323x51 Shared10095468
333x56 Shared00446
34E2 Shared10010016153
355x47 Shared090558
367x34 Shared10050545
377x42 Shared500447
387x53 Shared10095569
39Lig Shared1009511100
40NT hcar_on01000110
411x42 hcar_on00347
42I1 hcar_on085376
432x50 hcar_on050349
443x30 hcar_on00345
453x32 hcar_on00247
463x34 hcar_on030145
473x52 hcar_on015165
483x55 hcar_on030348
494x46 hcar_on00258
505x33 hcar_on050341
515x40 hcar_on050265
525x461 hcar_on010145
535x60 hcar_on00344
54I3 hcar_on025064
556x49 hcar_on00346
56E3 hcar_on025157
577x27 hcar_on085243
587x49 hcar_on5090349
597x54 hcar_on095257
   
Orange: nodes, hubs and links specific of hcar_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of hcar_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner hcar_off Recurrence hcar_on Recurrence hcar_off Hub1? hcar_on Hub1? hcar_off Hub2? hcar_on Hub2? ConSurf1 ConSurf2
11x23 7x28 hcar_off12.86290YesNoNoNo34
21x27 7x28 hcar_off19.19980NoNoNoNo34
31x27 7x31 hcar_off20.85650NoNoNoNo34
46x58 7x31 hcar_off22.76240NoNoNoNo44
56x58 7x34 hcar_off15.60920NoNoYesYes45
67x34 7x38 hcar_off17.51912.29999YesYesYesNo55
77x38 Lig hcar_off18.21473.05916YesNoYesYes50
81x39 Lig hcar_off12.04660YesNoYesYes80
91x39 7x39 hcar_off13.17650YesNoNoNo85
102x53 7x42 hcar_off45.23120YesNoYesYes77
112x53 2x54 hcar_off10.85240YesNoNoNo75
126x55 E2 hcar_off26.87580YesNoYesYes63
136x52 6x55 hcar_off32.74630YesNoYesNo86
146x48 6x52 hcar_off47.61960YesNoYesNo88
156x55 7x34 hcar_off12.79866.86402YesNoYesYes65
162x53 7x46 hcar_off37.20950YesNoNoNo78
172x50 7x46 hcar_off41.99844.05193NoYesNoNo98
181x50 2x47 hcar_off94.08930YesNoNoNo98
192x47 7x53 hcar_off93.12020NoNoYesYes89
201x57 7x53 hcar_off74.20190YesNoYesYes79
217x53 8x50 hcar_off16.26860YesYesYesNo98
221x57 2x40 hcar_off68.74550YesNoNoNo78
232x37 2x40 hcar_off68.81380NoNoNoNo78
242x37 I2x52 hcar_off61.11780NoNoYesNo74
253x43 6x44 hcar_off28.01770NoNoYesNo89
263x43 7x52 hcar_off25.53680NoNoYesNo87
276x36 7x52 hcar_off20.58710NoNoYesNo87
283x46 6x36 hcar_off18.18250NoNoNoNo98
292x42 3x46 hcar_off16.88380YesNoNoNo89
302x53 3x35 hcar_off10.92082.77166YesNoNoNo78
312x49 3x35 hcar_off14.67230NoNoNoNo88
322x49 3x38 hcar_off13.24090NoNoYesNo87
33E1x50 Lig hcar_off17.72820YesYesYesYes80
34E1x50 E1x52 hcar_off10.56296.84605YesYesYesNo87
353x36 3x37 hcar_off15.45640YesNoYesNo77
363x36 6x51 hcar_off23.86410YesNoYesNo76
375x39 5x43 hcar_off12.85890NoNoYesNo65
38I2x52 I2x57 hcar_off57.45480YesNoYesNo46
393x56 I2x57 hcar_off53.67510YesYesYesNo66
403x55 3x56 hcar_off48.89832.22362NoYesYesYes86
413x51 3x55 hcar_off34.51952.32694YesYesNoYes88
423x55 5x64 hcar_off13.30921.95409NoYesNoNo84
434x60 5x39 hcar_off15.86650NoNoNoNo86
446x51 7x37 hcar_off32.8872.72674YesNoNoNo67
456x54 7x37 hcar_off30.24932.25057NoNoNoNo57
466x54 6x57 hcar_off26.26860NoNoNoNo55
476x57 7x30 hcar_off24.26220NoNoNoNo55
486x61 7x30 hcar_off20.61520NoNoNoNo35
496x61 7x27 hcar_off18.58874.97282NoNoNoYes33
506x62 7x27 hcar_off16.55814.95485NoNoNoYes33
515x33 6x62 hcar_off14.51950.116796NoYesNoNo13
525x32 5x33 hcar_off10.41010NoNoNoYes21
535x61 6x34 hcar_off10.46640YesNoNoNo86
544x59 4x60 hcar_off13.21670.0179686NoNoNoNo48
553x36 7x42 hcar_off36.13190YesNoYesYes77
563x36 6x48 hcar_off26.37310YesNoYesNo78
576x51 6x52 hcar_off10.63530YesNoYesNo68
583x37 5x43 hcar_off14.96187.34918YesNoYesNo75
596x44 7x45 hcar_off10.9650YesNoYesNo99
607x42 Lig Shared34.471222.9864YesYesYesYes70
616x48 7x45 Shared53.140397.7494YesNoYesNo89
627x45 7x49 Shared63.112296.8869YesNoNoYes99
632x50 7x49 Shared62.69423.485NoYesNoYes99
641x50 2x50 Shared10017.3981YesNoNoYes99
656x44 6x48 Shared19.412927.784YesNoYesNo98
663x51 5x61 Shared23.872122.4294YesYesYesNo88
671x31 1x35 hcar_on012.1288NoNoNoNo26
681x35 2x64 hcar_on0.76397317.1151NoNoYesYes64
692x64 7x35 hcar_on012.9015YesYesNoNo44
70E2 Lig hcar_on013.8673YesYesYesYes30
71E2 NT hcar_on029.6213YesYesNoYes30
721x42 7x42 hcar_on013.5169NoYesYesYes77
733x40 6x48 hcar_on5.01407100NoNoYesNo88
743x40 5x461 hcar_on099.9865NoNoNoYes85
755x44 5x461 hcar_on053.6948NoNoNoYes55
765x44 E2 hcar_on051.552NoNoYesYes53
771x50 7x50 hcar_on3.0277416.1538YesNoNoNo99
781x52 7x55 hcar_on011.0732NoNoNoNo57
797x50 7x55 hcar_on012.3669NoNoNoNo97
801x57 2x44 hcar_on5.9388828.6196YesNoYesYes76
811x57 7x54 hcar_on085.6386YesNoNoYes77
822x46 7x54 hcar_on087.0356NoNoNoYes97
832x46 7x49 hcar_on1.4877484.6458NoNoNoYes99
842x40 I1 hcar_on0.99718511.9851NoNoNoYes86
851x57 I1 hcar_on1.1017356.6731YesNoNoYes76
862x38 4x42 hcar_on052.994NoNoNoNo67
872x41 4x42 hcar_on6.9119453.9374NoNoNoNo67
882x41 I1 hcar_on055.7971NoNoNoYes66
892x38 I2x57 hcar_on052.0147NoNoYesNo66
903x52 I2x54 hcar_on046.112NoYesNoNo55
91I2x54 I2x57 hcar_on1.3711347.1183NoNoYesNo56
922x44 2x45 hcar_on030.1918YesYesNoNo69
932x45 3x42 hcar_on1.4877422.7977NoNoYesYes97
94E1x50 E2 hcar_on012.1513YesYesYesYes83
955x40 E2 hcar_on011.9896NoYesYesYes53
963x34 4x50 hcar_on015.7899NoYesNoNo59
973x42 4x50 hcar_on0.012062718.2966YesYesNoNo79
983x36 Lig hcar_on037.9992YesNoYesYes70
993x37 5x461 hcar_on2.1994412.3355YesNoNoYes75
1003x51 3x52 hcar_on031.0768YesYesNoYes85
1013x54 5x61 hcar_on0.39002814.1054YesNoYesNo88
1023x54 5x65 hcar_on2.7945312.8386YesNoNoNo88
103E3 NT hcar_on011.4326NoYesNoYes70
1041x26 7x31 hcar_on010.4533NoNoNoNo54
1051x26 NT hcar_on011.3966NoNoNoYes50
1065x38 5x40 hcar_on010.5341NoNoNoYes35
1077x34 E2 hcar_on5.922810.0175YesYesYesYes53
1085x41 6x59 hcar_on010.2107NoNoNoNo45
1095x47 6x44 hcar_on018.2337YesYesYesNo89
1102x60 2x64 hcar_on011.4191NoNoYesYes64
1112x60 Lig hcar_on1.2424612.3714NoNoYesYes60
1127x35 Lig hcar_on012.9779NoNoYesYes40
1133x36 5x461 hcar_on038.417YesNoNoYes75

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x312x64hcar_off11.78501011
1x31Lighcar_off5.201010
1x351x39hcar_off4.6900021
1x352x64Shared10.559.730021
1x392x57Shared7.034.9820012
1x397x39hcar_off11.1300012
1x39Lighcar_off6.67500010
2x532x57hcar_off9.7401022
2x537x42hcar_off1501021
2x563x28hcar_off5.8500022
2x60LigShared10.6255.560010
2x63E1x50Shared4.947.8430021
2x647x38hcar_off5.1401011
2x64Lighcar_off17.43501010
E1x50E1x52Shared12.548.4661112
3x28E1x50Shared4.523.610021
E1x50E2x50Shared9.147.83751111
E1x50Lighcar_off10.16501110
3x22E2Shared6.86.6841121
3x25E2x50Shared7.287.0980121
3x29E2x50hcar_off7.6601111
3x29E2x52Shared5.965.4061111
3x29LigShared27.398.2651110
3x327x42Shared7.315.2381111
3x32LigShared11.99514.69551110
3x334x61hcar_off11.16501022
3x33E2hcar_off8.7101021
3x363x37hcar_off5.8600012
3x366x48hcar_off8.5300012
3x366x51hcar_off4.6900012
3x367x42hcar_off9.13500011
3x376x55hcar_off5.65501022
4x61E2hcar_off7.1801021
4x644x68hcar_off5.1901022
4x64E2hcar_off6.3901021
4x68E2hcar_off5.8201021
4x68E2x51hcar_off4.7601021
E2E2Shared20.30531.32951111
E2E2x51Shared9.73.62251111
E2x50Lighcar_off4.7201110
E2E2x52hcar_off11.5101111
7x34E2x52hcar_off8.0501121
5x39E2hcar_off9.43501021
6x55E2hcar_off11.15501021
6x59E2hcar_off5.6701021
6x58E2hcar_off12.5801021
7x34E2Shared5.279.16451121
5x406x55hcar_off11.8600122
6x516x55hcar_off9.2601022
6x557x34Shared5.1410.3681022
6x587x34hcar_off8.2301022
7x347x38Shared13.893.77751121
7x357x38hcar_off5.63500011
7x38LigShared13.8558.2881010
7x42LigShared4.5355.61551110
3x294x65hcar_off4.38501112
3x375x461Shared4.353.6311022
1x307x35hcar_off4.2800021
6x517x41hcar_off401022
1x362x61hcar_off3.100022
3x26E2hcar_off2.9401021
1x392x61Shared2.424.73550012
3x21E2hcar_off2.1100021
2x67Lighcar_off0.4200010
NTNThcar_on021.4960122
E2NThcar_on016.24951112
1x272x67hcar_on05.11750121
1x27E2hcar_on03.61450121
1x311x35hcar_on04.49451012
1x317x32hcar_on07.92251012
2x577x42hcar_on04.2210021
2x602x64hcar_on05.3530011
2x63E1hcar_on07.03550022
7x35E1hcar_on04.20850012
E1x49E2hcar_on06.43750021
3x25E1x50hcar_on06.78950121
3x223x26hcar_on04.04851122
3x25E2hcar_on07.7690121
3x365x461hcar_on04.41950012
3x367x41hcar_on05.10750012
3x36Lighcar_on010.0010010
4x63E2hcar_on04.18850021
E2x51Lighcar_on04.37351110
5x40E2x52hcar_on04.46350121
E2x52Lighcar_on04.81951110
5x40E2hcar_on06.1670121
5x44E2hcar_on06.1630121
E2Lighcar_on011.2681110
5x445x461hcar_on05.30750122
5x446x51hcar_on04.8850122
1x362x64hcar_on03.4750021
2x647x35hcar_on05.1561011
E1x50E2hcar_on04.60851111
7x35Lighcar_on04.330010
E1NThcar_on03.9550122
1x25E2hcar_on03.19150021
2x533x32hcar_on02.8621021
3x264x64hcar_on02.7871022
1x427x42hcar_on02.74950021
2x563x32hcar_on02.6040021
1x307x32hcar_on02.13150022
1x292x67hcar_on01.8460021
1x322x67hcar_on01.76550021
5x32E2x51hcar_on01.1410021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
hcar_off succinate_off
hcar_on hca_on
Network Difference
Value hcar_off hcar_on
Imin 4.46 3.427
Number of Linked Nodes 265 271
Number of Specific Nodes 12 (4.53%) 18  (6.64%)
Number of Shared Nodes 253 (95.47%) 253  (93.36%)
Number of Links 308 301
Number of Specific Links 201 (65.26%) 194  (64.45%)
Number of Shared Links 107 (34.74%) 107  (35.55%)
Number of Hubs 39 32
Number of Specific Hubs 27 (69.23%) 20  (62.50%)
Number of Shared Hubs 12 (30.77%) 12  (37.50%)
Average % Shared Neighbours (Jaccard) 22.74
Average % Shared Neighbours (Otsuka) 30.63
Average % Shared Neighbours (Overlap Coefficient) 38.63
Average % Shared Cliques (k3-6) 76.83
Graphlets Similarity 0.582669
Paths Difference
Value hcar_off hcar_on
Number Of Nodes in MetaPath 63 54
Specific Nodes in MetaPath 44 (69.84%) 35  (64.81%)
Shared Nodes in MetaPath 253 (95.47%) 253  (95.47%)
Number Of Links MetaPath 66 54
Specific Links in MetaPath 59 (89.39%) 47  (87.04%)
Shared Links in MetaPath 107 (34.74%) 107  (34.74%)
Number of Shortest Paths 52483 42955
Length Of Smallest Path 3 3
Average Path Length 14.1198 13.8796
Length of Longest Path 36 32
Minimum Path Strength 1.27 0.1285
Average Path Strength 8.21559 5.76926
Maximum Path Strength 22.4125 14.071
Minimum Path Correlation 0.7 0.701
Average Path Correlation 0.910277 0.914192
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.84615 3.7037
Average % Of Corr. Nodes 42.3905 41.8539
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 46.9527 35.6947
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download hcar_off_on.zip<



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