Orange: nodes, hubs and links specific of histamine_on network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of histamine_off network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner histamine_on Avg Int. Strength histamine_off Avg Int. Strength histamine_on Num Of Links histamine_off Num Of Links ConSurf
11x46 histamine_on00429
21x60 histamine_on00428
32x38 histamine_on00419
42x40 histamine_on250439
52x60 histamine_on700528
62x61 histamine_on00428
72x65 histamine_on00436
83x28 histamine_on5033.3333439
93x33 histamine_on7033.3333539
103x46 histamine_on00419
11I2x56 histamine_on2533.3333438
124x50 histamine_on550439
135x51 histamine_on00439
145x57 histamine_on700537
155x62 histamine_on00428
166x29 histamine_on250418
176x30 histamine_on00538
186x41 histamine_on033.3333439
19E3 histamine_on450534
207x49 histamine_on00439
217x53 histamine_on5066.6667439
228x50 histamine_on2533.3333439
23I3 histamine_on00600
242x42 Shared5033.3333478
252x50 Shared9033.3333549
262x57 Shared2566.6667559
27E1x50 Shared7566.6667859
283x37 Shared4066.6667449
294x57 Shared6066.6667458
30E2 Shared10010017115
315x47 Shared7533.3333649
325x58 Shared250449
336x44 Shared5066.6667549
346x48 Shared100100669
356x51 Shared95100669
367x38 Shared7533.3333448
377x39 Shared50100479
387x42 Shared75100769
398x54 Shared033.3333459
40Lig Shared1001009110
41NT histamine_off00245
422x56 histamine_off033.3333149
433x51 histamine_off250349
44I2x52 histamine_off033.3333345
45I2x53 histamine_off250249
46I2x57 histamine_off033.3333159
475x39 histamine_off250249
485x54 histamine_off2533.3333349
496x31 histamine_off033.3333247
507x34 histamine_off150347
517x45 histamine_off066.6667359
   
Orange: nodes, hubs and links specific of histamine_on network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of histamine_off network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner histamine_on Recurrence histamine_off Recurrence histamine_on Hub1? histamine_off Hub1? histamine_on Hub2? histamine_off Hub2? ConSurf1 ConSurf2
11x46 2x57 histamine_on17.71237.5708YesNoYesYes99
22x53 7x42 histamine_on26.34140NoNoYesYes99
33x43 7x49 histamine_on53.75990NoNoYesNo99
43x43 7x53 histamine_on52.84350NoNoYesNo99
53x46 7x53 histamine_on42.37370YesNoYesNo99
62x43 3x46 histamine_on32.74790NoNoYesNo99
72x43 8x50 histamine_on28.29870NoNoYesNo99
8I1x48 I1x50 histamine_on12.15390NoNoNoNo89
9I1x48 I1x49 histamine_on10.90790NoNoNoNo87
102x41 4x46 histamine_on12.91750NoNoNoNo89
112x42 3x46 histamine_on10.66281.65238YesYesYesNo89
122x45 4x50 histamine_on12.43126.56274NoNoYesNo99
132x60 3x28 histamine_on21.54250YesNoYesNo89
142x60 7x38 histamine_on12.33870YesNoYesYes88
157x42 Lig histamine_on46.82290YesYesYesYes90
163x33 4x57 histamine_on16.3940.649519YesNoYesYes98
173x36 Lig histamine_on34.35550.763835NoNoYesYes90
183x36 6x48 histamine_on34.50830.789816NoNoYesYes99
197x41 Lig histamine_on34.19070NoNoYesYes90
206x48 7x41 histamine_on44.22651.57963YesYesNoNo99
215x47 6x44 histamine_on26.83570YesYesYesYes99
225x54 6x44 histamine_on1000NoYesYesYes99
233x47 5x54 histamine_on42.67512.20837NoNoNoYes89
243x47 5x57 histamine_on44.42350NoNoYesNo87
255x54 5x58 histamine_on55.6730NoYesYesYes99
263x48 3x52 histamine_on23.12210NoNoNoNo68
273x33 E2 histamine_on51.75030YesNoYesYes95
285x36 E2 histamine_on10.99231.76669NoNoYesYes85
295x62 6x37 histamine_on45.08660YesNoNoNo89
305x62 5x66 histamine_on37.8122.20837YesNoNoNo87
315x66 6x30 histamine_on35.79840NoNoYesNo78
326x29 6x30 histamine_on12.10960YesNoYesNo88
336x40 7x53 histamine_on11.5591.616NoNoYesNo99
345x69 6x30 histamine_on16.65932.19797NoNoYesNo58
355x69 6x26 histamine_on15.11190NoNoNoNo55
365x73 6x26 histamine_on11.46260NoNoNoNo05
371x42 1x46 histamine_on12.98580NoNoYesNo79
381x39 2x61 histamine_on11.11690NoNoYesNo88
391x38 1x42 histamine_on11.37820NoNoNoNo47
402x60 7x42 histamine_on13.88613.31515YesNoYesYes89
411x39 7x39 Shared16.996910.7976NoNoYesYes89
427x39 7x42 Shared19.050731.125YesYesYesYes99
432x57 7x42 Shared23.73729.6337YesYesYesYes99
442x53 7x46 Shared21.550623.6477NoNoNoNo99
452x50 7x46 Shared21.719423.788YesYesNoNo99
461x50 2x50 Shared11.13715.708NoNoYesYes99
472x50 7x49 Shared16.848236.0249YesYesYesNo99
488x50 I1x50 Shared13.134546.9265YesNoNoNo99
492x46 3x42 Shared23.821460.9093NoNoNoNo98
502x45 3x42 Shared25.087459.6882NoNoNoNo98
512x45 4x46 Shared14.002753.4269NoNoNoNo99
523x28 E1x50 Shared14.927119.9013YesNoYesYes99
533x33 Lig Shared59.430922.7851YesNoYesYes90
543x37 4x57 Shared13.090310.1897YesYesYesYes98
553x37 3x41 Shared10.911912.8813YesYesNoNo98
566x44 6x48 Shared75.330628.5061YesYesYesYes99
576x52 Lig Shared31.980228.7088NoNoYesYes90
585x47 6x52 Shared32.281725.6846YesYesNoNo99
593x48 5x57 Shared25.091423.1904NoNoYesNo67
603x52 I2x52 Shared21.168827.8618NoNoNoYes85
61I2x52 I2x56 Shared15.598215.5781NoYesYesNo58
625x58 6x37 Shared49.869423.4191YesYesNoNo99
636x48 7x45 Shared49.636364.7129YesYesNoYes99
647x45 7x49 Shared47.988486.2562NoYesYesNo99
652x46 7x49 Shared16.9768100NoNoYesNo99
667x38 Lig Shared10.268925.4456YesYesYesYes80
672x56 7x42 histamine_off013.6607NoYesYesYes99
682x56 3x28 histamine_off023.8815NoYesYesNo99
69E1x50 E1x52 histamine_off3.593112.9488YesYesNoNo99
702x62 E1x52 histamine_off011.4731NoNoNoNo69
712x62 2x66 histamine_off010.2001NoNoNoNo65
721x50 7x50 histamine_off2.5280310.6365NoNoNoNo99
732x53 2x56 histamine_off025.2065NoNoNoYes99
748x50 8x54 histamine_off7.7127136.1548YesNoYesYes99
752x40 I1x50 histamine_off0.25320549.3115YesNoNoNo99
762x40 2x43 histamine_off051.9096YesNoNoNo99
772x43 7x53 histamine_off053.1826NoNoYesNo99
782x46 7x53 histamine_off055.5001NoNoYesNo99
791x53 8x54 histamine_off011.3588NoNoYesYes99
801x56 8x54 histamine_off1.302211.1042NoNoYesYes99
812x42 4x46 histamine_off049.5453YesYesNoNo89
822x54 2x57 histamine_off1.6197111.3432NoNoYesYes99
832x56 3x32 histamine_off2.0497617.511NoYesNoNo99
84E2 E2x52 histamine_off0.12459320.6807YesYesNoNo59
853x33 E2x52 histamine_off1.2941621.9174YesNoNoNo99
863x32 Lig histamine_off2.8093739.5999NoNoYesYes90
876x48 Lig histamine_off069.9402YesYesYesYes90
884x57 Lig histamine_off017.4331YesYesYesYes80
895x461 Lig histamine_off010.6261NoNoYesYes90
903x40 Lig histamine_off025.4819NoNoYesYes90
913x40 6x44 histamine_off0.30143525.352NoNoYesYes99
923x43 6x44 histamine_off069.4414NoNoYesYes99
933x44 5x54 histamine_off029.3011NoNoNoYes89
943x43 5x54 histamine_off067.5812NoNoNoYes99
953x44 3x48 histamine_off025.2169NoNoNoNo86
963x51 5x57 histamine_off6.3421916.9966NoYesYesNo97
973x51 5x61 histamine_off010.9119NoYesNoNo99
983x52 I2x53 histamine_off015.4222NoNoNoYes89
993x49 I2x53 histamine_off4.5978918.119NoNoNoYes99
1002x42 3x49 histamine_off7.1620938.701YesYesNoNo89
1013x52 I2x57 histamine_off015.4586NoNoNoYes89
1023x49 I2x57 histamine_off019.4024NoNoNoYes99
1035x47 5x48 histamine_off2.4958811.5614YesYesNoNo98
1045x54 6x41 histamine_off035.6664NoYesYesNo99
1055x58 6x41 histamine_off8.4843931.6082YesYesYesNo99
1068x47 8x50 histamine_off011.1354NoNoYesNo99
1076x51 7x38 histamine_off6.0005613.3229YesYesYesYes98
1087x38 7x42 histamine_off2.5923436.3575YesYesYesYes89
1096x54 7x34 histamine_off012.9696NoNoNoYes77
1107x54 8x54 histamine_off012.7046NoNoYesYes99
1115x65 6x31 histamine_off014.2738NoNoNoYes97
1125x65 6x34 histamine_off015.9314NoNoNoNo99
1133x50 6x34 histamine_off017.9683NoNoNoNo99
1143x50 6x37 histamine_off021.3614NoNoNoNo99
1157x54 8x51 histamine_off011.1198NoNoNoNo98
1163x32 7x42 histamine_off1.113321.1691NoNoYesYes99
1176x48 6x51 histamine_off022.7747YesYesYesYes99
1186x44 7x45 histamine_off022.8787YesYesNoYes99
1196x51 7x34 histamine_off6.8887910.5586YesYesNoYes97

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x532x56histamine_off3.7433300022
2x563x32Shared7.38.90051021
2x567x42histamine_off6.7301021
2x577x39histamine_off5.0401122
2x577x42Shared6.783334.3621121
2x607x39Shared8.663334.28351122
2x607x42Shared3.876675.7041121
3x327x42Shared5.366679.41111
3x32LigShared11.57339.58051110
3x334x57Shared8.3611.7191111
3x33E2x52Shared4.576673.21951112
3x33LigShared15.912.0611110
3x366x48Shared4.123.84551011
3x36LigShared9.956.1321010
3x374x57Shared7.283.92751021
3x375x461Shared7.314.67751021
3x405x50histamine_off6.2066700112
3x406x44Shared7.953333.80750112
3x40Lighistamine_off4.5900110
4x575x43Shared7.683333.73951012
4x575x461histamine_off9.0401011
4x57Lighistamine_off4.6566701010
E2E2Shared52.2846.95351122
E2E2x52Shared17.44678.42751122
5x461Lighistamine_off8.9033301010
5x476x52Shared27.86679.8810121
6x446x48Shared6.013333.7581121
6x447x45histamine_off7.2466701122
6x486x51histamine_off7.3966701111
6x487x41Shared11.269.4061111
6x487x45Shared3.766678.1361112
6x48Lighistamine_off12.013301110
6x516x55Shared10.664.4931111
6x517x34Shared4.716673.07751112
6x517x37Shared6.243334.65451112
6x517x38Shared5.244.21951111
6x51LigShared11.2315.68551110
6x52LigShared16.84673.15250010
6x55Lighistamine_off6.3066701010
7x347x38histamine_off4.8601121
7x387x42Shared5.248.20151111
7x38LigShared4.9966710.13051110
7x397x42Shared8.683337.8961121
5x406x55Shared7.033336.5390121
5x465x49histamine_off2.8533300012
5x446x52Shared2.772.98450021
5x495x50Shared2.186673.37650022
5x425x46histamine_off0.48666700021
2x537x42histamine_on03.01650021
2x607x38histamine_on06.5681121
3x33E2histamine_on04.2281112
3x406x48histamine_on07.2780111
5x40E2histamine_on03.51150122
5x476x44histamine_on03.85950122
5x476x48histamine_on04.1110121
7x42Lighistamine_on06.92151110
6x517x41histamine_on04.08151111
7x41Lighistamine_on05.20750110
5x46Lighistamine_on03.2920010
3x334x62histamine_on02.77951112
4x564x57histamine_on02.64450021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
histamine_off h1_off
histamine_on h1_on
h2_on
h3_on
h4_on
Network Difference
Value histamine_on histamine_off
Imin 2.9995 3.66667
Number of Linked Nodes 278 249
Number of Specific Nodes 30 (10.79%) 1  (0.40%)
Number of Shared Nodes 248 (89.21%) 248  (99.60%)
Number of Links 308 271
Number of Specific Links 155 (50.32%) 118  (43.54%)
Number of Shared Links 153 (49.68%) 153  (56.46%)
Number of Hubs 40 28
Number of Specific Hubs 23 (57.50%) 11  (39.29%)
Number of Shared Hubs 17 (42.50%) 17  (60.71%)
Average % Shared Neighbours (Jaccard) 36.83
Average % Shared Neighbours (Otsuka) 46.38
Average % Shared Neighbours (Overlap Coefficient) 56.61
Average % Shared Cliques (k3-6) 77.27
Graphlets Similarity 0.549178
Paths Difference
Value histamine_on histamine_off
Number Of Nodes in MetaPath 63 73
Specific Nodes in MetaPath 22 (34.92%) 32  (43.84%)
Shared Nodes in MetaPath 248 (89.21%) 248  (89.21%)
Number Of Links MetaPath 66 79
Specific Links in MetaPath 40 (60.61%) 53  (67.09%)
Shared Links in MetaPath 153 (49.68%) 153  (49.68%)
Number of Shortest Paths 55512 45209
Length Of Smallest Path 3 3
Average Path Length 12.4988 13.1962
Length of Longest Path 28 28
Minimum Path Strength 0.67825 0.413333
Average Path Strength 4.9642 6.20244
Maximum Path Strength 13.8733 22.3567
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.905698 0.911136
Maximum Path Correlation 0.9885 0.99
Minimum % Of Corr. Nodes 3.84615 4
Average % Of Corr. Nodes 43.8524 46.4475
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 46.831 36.4397
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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