Orange: nodes, hubs and links specific of kop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of kop_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner kop_off Avg Int. Strength kop_on Avg Int. Strength kop_off Num Of Links kop_on Num Of Links ConSurf
11x54 kop_off3.094.56333417
22x41 kop_off3.0342.88556535
32x45 kop_off9.6027.19444539
42x56 kop_off4.2154.71556437
53x38 kop_off7.086.66667437
63x41 kop_off4.2053.55111436
73x50 kop_off6.681677.545629
84x50 kop_off9.7959.41439
94x56 kop_off4.36755.885425
105x35 kop_off8.565.83167427
115x40 kop_off7.385.30333434
125x47 kop_off7.42756.50556438
136x44 kop_off9.3784.92529
147x45 kop_off7.866.77667439
158x48 kop_off5.8655.52667434
161x43 Shared4.21255.00417447
172x42 Shared6.5225.08333567
182x57 Shared7.9026.60667547
19E1x50 Shared9.601679.52333648
20E1x52 Shared11.0625.65611567
213x34 Shared7.24754.55417445
223x51 Shared6.8767.4925547
23E2.F214 Shared6.8284.26417546
245x58 Shared8.78255.98667458
256x48 Shared7.423755.33722868
267x38 Shared6.965.43583445
277x42 Shared10.57257.31456
287x49 Shared6.84255.94533459
297x53 Shared7.17755.27111469
308x50 Shared7.306675.64167648
31Lig Shared9.202317.7152413140
321x39 kop_on5.386674.40583346
331x50 kop_on7.165.4125349
341x60 kop_on4.0753.2125245
352x46 kop_on5.8055.054259
362x50 kop_on6.983336.55867359
372x64 kop_on6.636.3325244
383x37 kop_on7.263335.17133356
393x45 kop_on4.4353.75333246
403x56 kop_on2.953.7125146
41E2.R202 kop_on7.514.48667342
42E2.V207 kop_on4.153332.75353
435x44 kop_on7.736676.63345
446x30 kop_on3.932.83917246
456x32 kop_on10.814.59247
466x49 kop_on4.0053.7075245
476x51 kop_on4.513333.07333346
486x52 kop_on8.445.71667348
497x34 kop_on9.156678.0925344
507x35 kop_on8.693336.24611364
517x47 kop_on4.836672.735347
   
Orange: nodes, hubs and links specific of kop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of kop_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner kop_off Recurrence kop_on Recurrence kop_off Hub1? kop_on Hub1? kop_off Hub2? kop_on Hub2? ConSurf1 ConSurf2
11x38 1x42 kop_off11.82190NoNoNoNo57
21x34 1x38 kop_off10.37310NoNoNoNo55
36x48 Lig kop_off79.69170YesYesYesYes80
41x52 8x54 kop_off14.94690NoNoNoNo66
58x50 8x54 kop_off17.83610YesYesNoNo86
62x43 8x50 kop_off34.71610NoNoYesYes88
72x43 7x53 kop_off35.06990NoNoYesYes89
81x52 8x57 kop_off13.48970NoNoNoNo64
92x48 4x50 kop_off10.96280NoNoYesNo69
102x45 4x49 kop_off97.60780YesNoNoNo97
113x37 4x56 kop_off41.23154.17909NoYesYesNo65
123x33 4x56 kop_off42.77290NoNoYesNo55
133x33 Lig kop_off43.24883.8483NoNoYesYes50
143x40 3x41 kop_off62.83270NoNoYesNo76
153x40 6x44 kop_off66.51790NoNoYesNo79
166x44 6x48 kop_off61.17344.02069YesNoYesYes98
171x57 8x50 kop_off22.65410NoNoYesYes78
183x50 6x37 kop_off22.56150YesNoNoNo98
193x46 6x37 kop_off63.22020NoNoNoNo88
202x41 4x46 kop_off27.27856.88595YesNoNoNo57
212x41 4x42 kop_off10.84060YesNoNoNo57
222x42 4x42 kop_off10.75642.30153YesYesNoNo77
237x34 7x38 kop_off23.23110.0605665NoYesYesYes45
242x66 E1x51 kop_off46.54230NoNoNoNo41
25E1x51 E1x52 kop_off49.04822.25028NoNoYesYes17
26E1x49 E2.V207 kop_off21.026.7322NoNoNoYes43
272x66 E1x49 kop_off44.0280NoNoNoNo44
283x28 E1x50 kop_off32.90090NoNoYesYes68
29E1x50 E2x50 kop_off32.98942.14778YesYesNoNo89
30E2x50 Lig kop_off35.41950NoNoYesYes90
31E2.I208 E2.T199 kop_off15.81450NoNoNoNo44
32E1x49 E2.I208 kop_off21.024.4959NoNoNoNo44
335x58 6x37 kop_off40.6251.70518YesYesNoNo88
343x51 5x61 kop_off24.8610YesYesNoNo78
353x51 5x64 kop_off10.50370YesYesNoNo75
362x41 4x39 kop_off11.89770YesNoNoNo52
375x32 E2.F214 kop_off21.89180NoNoYesYes16
385x32 5x36 kop_off26.04870NoNoNoNo14
39E2.R202 E2.V205 kop_off13.19910NoYesNoNo21
40E2.V205 E2.V207 kop_off15.81450NoNoNoYes13
416x27 6x30 kop_off10.36890NoNoNoYes36
423x50 6x30 kop_off12.29780YesNoNoYes96
438x48 8x49 kop_off10.34790YesNoNoNo46
448x47 8x49 kop_off11.82192.32482NoNoNoNo86
458x47 8x50 kop_off17.62554.64499NoNoYesYes88
461x57 I1x51 kop_off22.17820NoNoNoNo77
47E1x50 E1x52 kop_off58.56220.642937YesYesYesYes87
482x41 I1x51 kop_off21.31910YesNoNoNo57
491x42 2x57 Shared24.48236.68NoNoYesYes77
501x42 7x47 Shared11.821929.7288NoNoNoYes77
512x50 7x49 Shared12.900144.6049NoYesYesYes99
527x45 7x49 Shared40.334497.7637YesNoYesYes99
536x48 7x45 Shared36.0091100YesYesYesNo89
547x42 Lig Shared33.023145.2525YesYesYesYes60
552x57 7x42 Shared33.772748.9051YesYesYesYes76
567x49 7x53 Shared33.814982.4031YesYesYesYes99
572x45 4x50 Shared26.655244.3487YesNoYesNo99
583x41 4x49 Shared10067.3733YesNoNoNo67
593x37 3x41 Shared41.618970.2525NoYesYesNo66
602x42 4x46 Shared67.937267.1543YesYesNoNo77
612x45 4x46 Shared77.952358.9918YesNoNoNo97
622x42 3x46 Shared65.069137.5699YesYesNoNo78
637x38 Lig Shared16.724226.435YesYesYesYes50
643x28 Lig Shared34.01760.3569NoNoYesYes60
653x22 E2.T199 Shared13.199142.0239NoNoNoNo24
663x34 4x50 Shared14.55135.7762YesYesYesNo59
676x48 6x52 Shared16.42151.8776YesYesNoYes88
683x47 5x58 Shared10.503727.227NoNoYesYes98
695x58 5x61 Shared26.878436.9922YesYesNoNo88
705x36 5x40 Shared28.175524.3431NoNoYesNo44
715x40 6x55 Shared38.687727.8327YesNoNoNo45
726x55 Lig Shared28.141821.6316NoNoYesYes50
735x35 E2.F214 Shared13.23712.8354YesNoYesYes76
745x47 6x52 Shared21.828711.2467YesNoNoYes88
756x48 6x51 Shared19.958711.5123YesYesNoYes86
766x51 6x55 Shared13.346511.1349NoYesNoNo65
776x54 7x34 Shared11.674514.7363NoNoNoYes54
781x36 2x64 kop_on010.4454NoNoNoYes54
792x64 7x35 kop_on4.6959230.9215NoYesNoYes44
801x39 7x35 kop_on016.4648NoYesNoYes64
811x39 2x57 kop_on4.4937711.8291NoYesYesYes67
821x39 7x39 kop_on010.1985NoYesNoNo65
831x43 2x57 kop_on6.2289410.4081YesYesYesYes77
847x34 7x35 kop_on9.4044826.1694NoYesNoYes44
857x34 Lig kop_on039.6618NoYesYesYes40
863x36 Lig kop_on7.5977177.828NoNoYesYes70
873x36 6x48 kop_on0.57698846.7667NoNoYesYes78
881x50 2x50 kop_on9.7245653.7831NoYesNoYes99
897x35 7x38 kop_on025.1537NoYesYesYes45
906x52 Lig kop_on054.2443NoYesYesYes80
911x50 2x47 kop_on1.6383145.3783NoYesNoNo98
921x53 2x47 kop_on043.2818NoNoNoNo98
933x36 3x37 kop_on041.3949NoNoNoYes76
943x45 4x49 kop_on066.4974NoYesNoNo67
952x42 3x45 kop_on057.7525YesYesNoYes76
962x44 2x45 kop_on013.6927NoNoYesNo59
975x43 Lig kop_on1.4656340.0298NoNoYesYes50
983x37 5x43 kop_on037.7889NoYesNoNo65
997x47 7x48 kop_on022.6845NoYesNoNo76
1007x48 7x51 kop_on020.9281NoNoNoNo67
1017x51 7x55 kop_on3.0028619.2182NoNoNoNo76
1021x52 7x55 kop_on017.9883NoNoNoNo66
1031x52 1x55 kop_on017.6947NoNoNoNo64
1041x55 1x60 kop_on017.8485NoNoNoYes45
1051x56 1x60 kop_on022.5261NoNoNoYes85
1061x56 8x50 kop_on023.579NoNoYesYes88
1071x53 7x54 kop_on041.2318NoNoNoNo97
1087x54 8x50 kop_on039.2564NoNoYesYes78
1098x50 I1x48 kop_on013.3433YesYesNoNo86
1103x34 3x35 kop_on015.943YesYesNoNo58
1112x59 3x28 kop_on063.539NoNoNoNo56
1122x59 E1x52 kop_on4.9654712.4394NoNoYesYes57
1132x59 E1x50 kop_on049.3245NoNoYesYes58
1143x25 E1x50 kop_on0.12634846.0399NoNoYesYes98
1153x25 E2.T199 kop_on044.0924NoNoNoNo94
1163x22 3x26 kop_on2.653339.946NoNoNoNo26
1173x26 E2.G198 kop_on037.8587NoNoNoNo64
1183x50 7x53 kop_on073.7933YesNoYesYes99
1193x50 5x58 kop_on072.377YesNoYesYes98
1203x47 5x57 kop_on023.0712NoNoNoNo97
1213x51 5x57 kop_on2.1142220.9793YesYesNoNo77
1223x45 3x48 kop_on2.1142220.4715NoYesNoNo66
1233x48 3x52 kop_on018.1793NoNoNoNo65
1243x52 I2x56 kop_on015.8777NoNoNoNo54
1253x54 5x61 kop_on034.9609NoNoNoNo88
1263x54 5x65 kop_on2.1142232.9296NoNoNoNo88
1274x41 I2x56 kop_on013.5669NoNoNoNo54
1284x38 4x41 kop_on011.7359NoNoNoNo75
1295x36 E2.F214 kop_on022.5773NoNoYesYes46
130E2.G198 E2.Q213 kop_on2.653333.6564NoNoNoNo44
131E2.K200 E2.Q213 kop_on029.4167NoNoNoNo24
132E2.E209 E2.K200 kop_on2.653323.4765NoNoNoNo32
1335x34 5x35 kop_on4.4263811.0417NoNoYesNo17
1345x44 6x52 kop_on011.2467NoYesNoYes58
1355x65 I3.L259 kop_on029.2956NoNoNoNo83
1366x30 I3.L259 kop_on014.6524NoYesNoNo63
1375x68 I3.L259 kop_on012.9659NoNoNoNo63
1381x60 8x51 kop_on023.402NoYesNoNo58
1398x48 8x51 kop_on021.4219YesNoNoNo48
1406x32 8x48 kop_on2.9481116.0641NoYesYesNo74
1416x54 6x58 kop_on013.4551NoNoNoNo55
1426x54 7x33 kop_on4.7296224.3897NoNoNoNo54
1431x31 1x33 kop_on011.2747NoNoNoNo45
1441x33 2x64 kop_on014.3915NoNoNoYes54
145E2.E209 E2.V207 kop_on013.2734NoNoNoYes33
1465x68 I3.L258 kop_on010.8274NoNoNoNo65
1477x30 7x33 kop_on020.7603NoNoNoNo34
1483x46 7x53 kop_on038.7766NoNoYesYes89
1496x58 Lig kop_on015.0624NoNoYesYes50
1507x27 7x30 kop_on013.5063NoNoNoNo03
1512x46 2x50 kop_on017.4851NoYesNoYes99
1522x46 7x53 kop_on2.472217.8205NoYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x31kop_off4.5601112
2x567x42Shared4.993.746671111
2x56Ligkop_off5.7401110
2x577x42Shared17.9611.57331021
2x607x38Shared5.494.571111
2x607x42Shared5.6411.27331111
2x60LigShared9.514.54331110
3x25E1x50Shared5.226.093331322
3x28E1x50kop_off7.3600012
E1x50E2x50Shared23.5112.62331321
3x25E2x50Shared7.287.281321
3x28LigShared3.874.680010
3x32LigShared33.4717.14330110
3x334x56kop_off5.0500112
3x33LigShared6.098.370110
3x356x48kop_off4.5200021
3x366x48Shared6.985.043331011
3x366x52kop_off5.2501011
3x36LigShared11.018.093331010
3x374x56Shared9.189.616670022
3x406x44kop_off7.5400022
E2x50Ligkop_off4.1201310
5x32E2x51kop_off3.8200012
5x32E2.F214kop_off12.3800012
5x39E2.F214kop_off6.2200022
5x325x36kop_off12.6400012
5x365x40Shared16.596.450022
5x406x55Shared7.276.783330021
5x406x58kop_off4.0500021
5x43LigShared8.74.283330010
5x476x52Shared15.846.033330121
6x446x48Shared22.056.346671021
6x447x45kop_off7.2501022
6x486x51Shared4.73.916671012
6x486x52Shared4.234.936671011
6x487x41kop_off4.2201012
6x487x45Shared6.789.041012
6x48Ligkop_off5.9101010
6x516x55Shared4.423.926670021
6x517x38kop_off4.4200021
6x547x34Shared7.228.596670021
6x55LigShared10.196.103330010
7x347x35Shared6.954.633330112
7x347x38Shared13.37.653330111
7x38LigShared4.634.683331110
7x42LigShared13.76.506671110
E2.F214E2x52kop_off3.6500022
3x29LigShared2.77.176670110
5x445x47Shared2.147.860122
2x552x56kop_off1.5700021
2x563x28kop_on03.173331111
2x563x32kop_on07.226671111
2x59E1x50kop_on03.006670322
2x593x28kop_on08.30321
3x293x33kop_on03.150111
3x313x35kop_on03.303330022
3x327x42kop_on03.450111
3x33E2x52kop_on03.910112
3x363x37kop_on03.733331012
3x375x43kop_on05.240021
5x36E2.F214kop_on09.153330022
5x32Ligkop_on08.230010
5x446x52kop_on08.673330121
6x546x58kop_on06.220021
6x58Ligkop_on03.490010
7x34Ligkop_on011.48670110
7x357x38kop_on04.836670121
6x52Ligkop_on03.223331110
3x406x48kop_on02.740021
5x395x43kop_on02.026670021
6x517x41kop_on01.176670022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
kop_off 4DJH-κ-JDTic
kop_on 8F7W-κ-Dynorphin-Gi1/β1/γ2
8DZS-κ-GR89,696-chim(NtGi2-Gz)/β1/γ2
8DZP-κ-momSalB-Gi1/β1/γ2
Network Difference
Value kop_off kop_on
Imin 3.77 2.89667
Number of Linked Nodes 267 280
Number of Specific Nodes 12 (4.49%) 25  (8.93%)
Number of Shared Nodes 255 (95.51%) 255  (91.07%)
Number of Links 283 303
Number of Specific Links 147 (51.94%) 167  (55.12%)
Number of Shared Links 136 (48.06%) 136  (44.88%)
Number of Hubs 31 36
Number of Specific Hubs 15 (48.39%) 20  (55.56%)
Number of Shared Hubs 16 (51.61%) 16  (44.44%)
Average % Shared Neighbours (Jaccard) 30.88
Average % Shared Neighbours (Otsuka) 39.19
Average % Shared Neighbours (Overlap Coefficient) 47.37
Average % Shared Cliques (k3-6) 52.68
Graphlets Similarity 0.547695
Paths Difference
Value kop_off kop_on
Number Of Nodes in MetaPath 73 96
Specific Nodes in MetaPath 28 (38.36%) 51  (53.13%)
Shared Nodes in MetaPath 255 (95.51%) 255  (95.51%)
Number Of Links MetaPath 77 104
Specific Links in MetaPath 48 (62.34%) 75  (72.12%)
Shared Links in MetaPath 136 (48.06%) 136  (48.06%)
Number of Shortest Paths 56638 67072
Length Of Smallest Path 3 3
Average Path Length 13.5668 13.9794
Length of Longest Path 28 33
Minimum Path Strength 1.19 0.561111
Average Path Strength 7.49257 5.43735
Maximum Path Strength 23.585 15.8433
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.927016 0.919438
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.16667 3.57143
Average % Of Corr. Nodes 51.1576 42.4198
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 42.6738 40.5104
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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