Orange: nodes, hubs and links specific of leuko_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of leuko_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner leuko_off Avg Int. Strength leuko_on Avg Int. Strength leuko_off Num Of Links leuko_on Num Of Links ConSurf
11x35 leuko_off6.911253.15415
21x39 leuko_off5.0894.52537
31x43 leuko_off4.894174.73416
41x59 leuko_off3.698334.64414
52x37 leuko_off3.928330407
62x39 leuko_off3.962082.735427
72x42 leuko_off3.25.78417
82x44 leuko_off4.5655.645426
92x60 leuko_off5.4530612.86626
103x28 leuko_off3.836675.59415
113x30 leuko_off6.231115.67635
123x32 leuko_off4.051254.36426
133x42 leuko_off5.574173.525427
143x44 leuko_off3.833334.48333437
153x50 leuko_off3.841677.715429
164x50 leuko_off3.823674.1539
17E2x52 leuko_off6.242089.50667434
185x36 leuko_off6.758337.78333434
195x60 leuko_off3.0738.93523
206x31 leuko_off2.8295811.955425
216x33 leuko_off2.907082.59417
226x47 leuko_off3.854583.49667437
236x55 leuko_off7.470286.83333636
247x49 leuko_off5.197086.8429
25I4 leuko_off10.61182.2851125
261x57 Shared4.621674.93447
272x46 Shared4.967924.618459
282x50 Shared5.3516.18559
29E1x50 Shared6.321677.528858
30E1x52 Shared10.98295.485447
313x37 Shared3.731674.628557
32E2 Shared14.986813.865511113
335x50 Shared6.4054.295449
345x51 Shared5.053334.6225546
355x58 Shared4.165.87548
36I3 Shared7.187084.18454
376x48 Shared6.207384.635769
386x51 Shared6.747337.8925546
396x52 Shared7.465834.142458
406x58 Shared6.1252.882453
41E3 Shared4.973896.732654
427x53 Shared5.522085.244459
43Lig Shared6.329526.5918214110
441x50 leuko_on5.706676.865349
452x43 leuko_on3.972222.7075347
462x64 leuko_on6.1754.67343
473x29 leuko_on10.44067.5075346
483x34 leuko_on6.944.645145
495x39 leuko_on4.111676.695245
505x46 leuko_on5.8354.4125245
515x47 leuko_on9.247225.172358
525x64 leuko_on2.385.895145
537x52 leuko_on3.412782.855348
547x55 leuko_on3.08753.7175247
557x58 leuko_on1.203332.6075344
567x62 leuko_on7.595.23256
   
Orange: nodes, hubs and links specific of leuko_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of leuko_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner leuko_off Recurrence leuko_on Recurrence leuko_off Hub1? leuko_on Hub1? leuko_off Hub2? leuko_on Hub2? ConSurf1 ConSurf2
16x58 7x31 leuko_off10.44543.39067YesYesNoNo33
25x36 6x58 leuko_off22.64790YesNoYesYes43
3E1x50 E2 leuko_off22.20860YesYesYesYes83
45x36 Lig leuko_off25.77380YesNoYesYes40
57x35 Lig leuko_off12.32512.16489NoNoYesYes40
61x35 7x35 leuko_off11.31880YesNoNoNo54
76x47 7x43 leuko_off10.43520YesNoNoNo75
87x45 7x49 leuko_off1000NoNoYesNo99
91x57 7x53 leuko_off25.91170YesYesYesYes79
101x57 2x44 leuko_off15.37445.10083YesYesYesNo76
116x40 7x49 leuko_off78.37370NoNoYesNo79
126x36 6x40 leuko_off74.41520NoNoNoNo77
136x36 I4 leuko_off72.60190NoNoYesNo75
142x39 I4 leuko_off61.11450YesNoYesNo75
153x32 Lig leuko_off11.01750YesNoYesYes60
162x53 3x32 leuko_off14.66950NoNoYesNo66
172x53 3x35 leuko_off13.5565.44682NoNoNoNo68
182x49 3x35 leuko_off13.27510NoNoNoNo88
192x49 4x50 leuko_off13.04532.42191NoNoYesNo89
202x45 3x42 leuko_off13.93910NoNoYesNo97
212x60 3x28 leuko_off10.39430YesNoYesNo65
223x33 Lig leuko_off10.51699.95453NoNoYesYes40
233x33 4x61 leuko_off10.48630NoNoNoNo44
243x36 6x48 leuko_off11.59980.652432NoNoYesYes79
253x36 6x51 leuko_off10.53220NoNoYesYes76
263x40 6x48 leuko_off16.12010NoNoYesYes89
273x40 5x50 leuko_off14.70532.45156NoNoYesYes89
282x39 3x50 leuko_off56.39490YesNoYesNo79
295x58 6x38 leuko_off39.07960YesYesNoNo85
305x61 6x38 leuko_off36.730NoNoNoNo85
313x51 3x55 leuko_off17.60650NoNoNoNo87
326x52 6x55 leuko_off10.12870YesYesYesNo86
335x47 5x51 leuko_off14.03110.899565NoYesYesYes86
346x58 6x61 leuko_off13.84210YesYesNoNo32
351x57 8x50 leuko_off10.39940YesYesNoNo70
363x55 3x56 leuko_off16.21210NoNoNoNo77
373x56 I2x52 leuko_off13.39269.95453NoNoNoNo75
383x50 6x33 leuko_off11.76320YesNoYesNo97
39E2 Lig leuko_off28.7210YesYesYesYes30
406x55 Lig leuko_off23.57240YesNoYesYes60
412x60 Lig Shared13.086129.6066YesNoYesYes60
426x48 Lig Shared90.412775.2669YesYesYesYes90
436x48 7x45 Shared93.523351.5915YesYesNoNo99
442x50 7x49 Shared18.306349.9802YesYesYesNo99
452x50 7x46 Shared10.435282.7798YesYesNoNo99
462x46 7x49 Shared44.984248.3887YesYesYesNo99
472x46 7x53 Shared31.039935.5971YesYesYesYes99
482x45 4x46 Shared20.1427.7086NoNoNoNo97
492x41 4x46 Shared10.108326.5322NoNoNoNo67
502x46 3x42 Shared21.095111.1408YesYesYesNo97
513x37 Lig Shared19.746765.3223YesYesYesYes70
523x50 5x58 Shared45.612411.9612YesNoYesYes98
533x51 5x61 Shared27.081420.5121NoNoNoNo88
545x40 6x55 Shared10.61415.1246NoNoYesNo46
555x47 6x52 Shared21.018514.0075NoYesYesYes88
561x38 7x36 leuko_on011.8723NoNoNoNo56
571x45 7x47 leuko_on4.530610.429NoNoNoNo57
581x38 7x39 leuko_on1.5731917.2005NoNoNoNo54
591x39 7x39 leuko_on019.6422YesNoNoNo74
601x39 7x42 leuko_on4.9085731.7517YesNoNoNo76
617x42 Lig leuko_on6.09868100NoNoYesYes60
622x64 Lig leuko_on011.724NoYesYesYes30
631x39 2x61 leuko_on5.521510.8244YesNoNoNo77
641x46 7x47 leuko_on1.5170117.3982NoNoNoNo87
651x46 1x50 leuko_on022.1036NoNoNoYes89
661x50 2x51 leuko_on3.0289110.429NoYesNoNo97
672x53 7x42 leuko_on085.2313NoNoNoNo66
682x53 7x46 leuko_on083.1257NoNoNoNo69
692x50 7x50 leuko_on068.5943YesYesNoNo99
701x53 7x50 leuko_on076.038NoNoNoNo89
711x53 7x55 leuko_on069.1874NoNoNoYes87
721x52 7x55 leuko_on010.9035NoNoNoYes67
737x55 7x62 leuko_on053.4599NoYesNoYes76
741x56 7x62 leuko_on010.3401NoNoNoYes76
751x56 1x60 leuko_on014.3733NoNoNoNo75
761x57 7x62 leuko_on030.7038YesYesNoYes76
771x57 2x40 leuko_on015.8264YesYesNoNo77
781x57 2x43 leuko_on0.12769414.9664YesYesNoYes77
797x61 7x62 leuko_on014.7786NoNoNoYes76
802x43 7x61 leuko_on012.5544NoYesNoNo77
812x39 2x43 leuko_on017.9221YesNoNoYes77
822x39 I2x57 leuko_on6.834213.2859YesNoNoNo77
833x37 4x53 leuko_on044.0589YesYesNoNo78
843x38 4x53 leuko_on1.6651334.0945NoNoNoNo68
853x38 4x50 leuko_on3.3251632.4338NoNoYesNo69
862x45 4x50 leuko_on8.2388429.2112NoNoYesNo99
872x60 3x29 leuko_on0.32689828.2127YesNoNoYes66
883x25 3x29 leuko_on041.469NoNoNoYes96
893x25 E1x50 leuko_on1.6804633.8869NoNoYesYes98
90E1x50 E1x52 leuko_on8.5759524.9605YesYesYesYes87
914x61 Lig leuko_on029.824NoNoYesYes40
923x29 4x61 leuko_on028.5389NoYesNoNo64
935x43 Lig leuko_on054.1222NoNoYesYes50
945x39 5x43 leuko_on047.6473NoYesNoNo55
955x39 E2 leuko_on038.4045NoYesYesYes53
963x29 4x65 leuko_on0.051077712.0206NoYesNoNo65
973x34 4x53 leuko_on012.0008NoYesNoNo58
983x37 3x41 leuko_on016.8051YesYesNoNo75
993x50 7x53 leuko_on013.4243YesNoYesYes99
1003x47 5x58 leuko_on034.0747NoNoYesYes98
1016x40 7x53 leuko_on026.5322NoNoYesYes79
1025x58 6x40 leuko_on030.7335YesYesNoNo87
1036x47 7x45 leuko_on6.6298949.8715YesNoNoNo79
1046x43 6x47 leuko_on047.3408NoNoYesNo67
1056x43 7x52 leuko_on3.0186946.5599NoNoNoYes68
1066x40 7x52 leuko_on6.0016336.4472NoNoNoYes78
1073x47 5x57 leuko_on027.3329NoNoNoNo96
1083x51 5x57 leuko_on023.9324NoNoNoNo86
1092x41 4x39 leuko_on025.8897NoNoNoNo64
1104x38 4x39 leuko_on021.5994NoNoNoNo64
1114x38 4x41 leuko_on1.511919.2369NoNoNoNo63
1124x41 I2x56 leuko_on016.8545NoNoNoNo34
113I2x52 I2x56 leuko_on7.9323712.3962NoNoNoNo54
1145x36 E2 leuko_on4.6072123.8434YesNoYesYes43
1155x36 E3 leuko_on011.981YesNoYesYes44
1165x43 6x55 leuko_on1.379119.1677NoNoYesNo56
1177x38 Lig leuko_on3.6980313.3155NoNoYesYes50
1186x51 7x38 leuko_on2.5692111.3484YesYesNoNo65
1196x51 7x34 leuko_on014.1953YesYesNoNo64
1206x48 6x52 leuko_on024.6738YesYesYesYes98
1216x44 6x48 leuko_on1.511922.6572NoNoYesYes99
1225x47 6x44 leuko_on011.6153NoYesNoNo89
1235x47 6x49 leuko_on3.5039315.3717NoYesNoNo86
1245x61 5x65 leuko_on013.6121NoNoNoNo88
1255x65 I3 leuko_on3.0186910.1127NoNoYesYes84
1266x36 7x52 leuko_on026.3938NoNoNoYes78
1276x36 7x58 leuko_on021.9059NoNoNoYes74
1286x32 7x58 leuko_on010.0633NoNoNoYes74
1292x41 I1x51 leuko_on017.0819NoNoNoNo66
1301x50 2x50 leuko_on8.9743624.486NoYesYesYes99
1312x40 I1x51 leuko_on016.4788NoNoNoNo76

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x352x64Shared11.623.150021
1x392x60leuko_off5.2400021
1x397x42Shared6.1454.870021
2x533x32leuko_off4.3483300021
2x603x28leuko_off3.5416701012
2x603x29Shared4.5256.791011
2x603x32leuko_off3.6201011
2x60LigShared7.89518.931010
2x63E1x50Shared6.543335.010022
E1x49E2Shared6.54.610021
3x25E1x50Shared5.8759.141122
3x28E1x50leuko_off4.8683300022
E1x50E2leuko_off4.8401121
E1x50E2x50Shared6.9666715.671122
3x22E2Shared5.306675.961121
3x25E2x50Shared7.287.281122
3x294x65Shared14.6714.671011
3x29Ligleuko_off12.126701010
3x323x33Shared4.496671.961011
3x32Ligleuko_off3.7401010
3x366x48Shared6.643333.490211
3x366x51leuko_off4.1900212
3x374x56Shared4.6910.550212
3x375x461leuko_off3.62500212
4x64E2Shared11.62518.271121
4x645x35Shared4.0656.531122
4x645x39Shared3.814.361122
4x65E2x52Shared9.3715.851111
4x65Ligleuko_off6.08501110
E2E2Shared51.941735.951111
E2x51E2x52Shared6.54.330121
E2E2x52Shared4.898.341111
E2x52Ligleuko_off4.2083301110
5x35E2Shared8.603335.671121
5x36E2Shared10.906713.381111
5x335x36Shared5.8155.820021
5x336x62Shared7.186671.510022
5x366x58leuko_off4.6501112
5x406x55Shared6.963332.750021
5x436x55Shared3.9752.630011
6x446x48Shared11.15335.010221
6x476x48leuko_off3.5266701021
6x477x45Shared5.801675.281022
6x487x45Shared8.136677.411212
6x48LigShared4.0253.541210
6x516x52Shared7.625.441022
6x516x55Shared13.3615.121021
6x517x38Shared5.3154.841021
6x526x55leuko_off4.7783301021
6x557x34leuko_off6.8333301012
6x587x34Shared9.613.490822
E3E3Shared8.136677.144122
7x35LigShared3.708336.830010
7x38LigShared7.923336.210010
7x42LigShared4.6653.030010
1x351x39leuko_off7.73500022
1x357x35leuko_off4.1533300021
2x60E2x51leuko_off7.8966701012
2x632x64leuko_off4.800021
3x33LigShared11.5652.131010
3x376x52leuko_off3.6283300212
3x37LigShared3.5954.370210
3x406x48leuko_off6.9083300021
6x62E2leuko_off3.7966701021
E2Ligleuko_off4.5033301110
5x36Ligleuko_off5.6616701110
6x55Ligleuko_off8.9116701010
3x375x46Shared3.123.750212
2x563x28leuko_off3.10500022
6x487x41Shared3.058335.191212
3x334x61leuko_off2.73501011
3x304x61leuko_off2.28500621
1x362x64Shared2.1052.850021
2x537x42leuko_on02.620021
2x563x32leuko_on06.760021
2x64Ligleuko_on011.180010
3x253x29leuko_on04.421121
3x294x61leuko_on04.151011
3x36Ligleuko_on05.270210
3x374x53leuko_on02.540212
4x565x46leuko_on02.950222
4x61Ligleuko_on02.780010
4x65E2x51leuko_on04.281112
E2E2x50leuko_on03.421112
E2E2x51leuko_on08.991112
5x39E2leuko_on011.980121
5x36E3leuko_on04.151112
5x395x43leuko_on07.390121
5x406x58leuko_on02.650022
5x43Ligleuko_on08.240010
6x486x52leuko_on03.171212
6x517x34leuko_on06.171022
3x373x41leuko_on01.930212
5x4616x52leuko_on01.590022
1x322x64leuko_on01.50021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
leuko_off blt_off
cyslt_off
leuko_on blt_on
Network Difference
Value leuko_off leuko_on
Imin 3.485 2.54
Number of Linked Nodes 278 235
Number of Specific Nodes 49 (17.63%) 6  (2.55%)
Number of Shared Nodes 229 (82.37%) 229  (97.45%)
Number of Links 312 260
Number of Specific Links 177 (56.73%) 125  (48.08%)
Number of Shared Links 135 (43.27%) 135  (51.92%)
Number of Hubs 43 31
Number of Specific Hubs 25 (58.14%) 13  (41.94%)
Number of Shared Hubs 18 (41.86%) 18  (58.06%)
Average % Shared Neighbours (Jaccard) 29.82
Average % Shared Neighbours (Otsuka) 38.60
Average % Shared Neighbours (Overlap Coefficient) 47.81
Average % Shared Cliques (k3-6) 78.03
Graphlets Similarity 0.516211
Paths Difference
Value leuko_off leuko_on
Number Of Nodes in MetaPath 57 86
Specific Nodes in MetaPath 22 (38.60%) 51  (59.30%)
Shared Nodes in MetaPath 229 (82.37%) 229  (82.37%)
Number Of Links MetaPath 55 91
Specific Links in MetaPath 40 (72.73%) 76  (83.52%)
Shared Links in MetaPath 135 (43.27%) 135  (43.27%)
Number of Shortest Paths 42602 31749
Length Of Smallest Path 3 3
Average Path Length 11.4041 11.4882
Length of Longest Path 28 30
Minimum Path Strength 0.446667 1.38
Average Path Strength 5.18411 4.87364
Maximum Path Strength 15.1089 15.825
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.912325 0.922016
Maximum Path Correlation 0.993333 0.99
Minimum % Of Corr. Nodes 4 4.34783
Average % Of Corr. Nodes 47.5015 53.2743
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 49.1057 36.5553
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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