Orange: nodes, hubs and links specific of leukotriene_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of leukotriene_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner leukotriene_off Avg Int. Strength leukotriene_on Avg Int. Strength leukotriene_off Num Of Links leukotriene_on Num Of Links ConSurf
11x30 leukotriene_off3.0498.16514
21x39 leukotriene_off5.099174.52537
31x43 leukotriene_off4.132714.73415
41x56 leukotriene_off1.453445.28436
52x60 leukotriene_off7.2005212.86426
63x42 leukotriene_off6.031153.525427
73x50 leukotriene_off3.321927.715529
83x51 leukotriene_off4.921044.81428
94x50 leukotriene_off4.0364.1539
105x40 leukotriene_off4.594062.85435
116x31 leukotriene_off3.2984411.955424
126x47 leukotriene_off3.204793.49667437
136x55 leukotriene_off7.736466.83333635
14CT leukotriene_off5.562780900
15I1 leukotriene_off3.55510400
161x50 Shared5.208026.865449
172x50 Shared5.9856.18459
18E1x50 Shared7.397987.528758
19E1x52 Shared10.22065.485447
203x34 Shared4.033964.645445
213x37 Shared4.176254.628557
22E2 Shared11.93813.865512113
235x50 Shared5.430624.295449
245x51 Shared4.926154.6225446
255x58 Shared4.904515.87649
26I3 Shared4.511874.18454
276x48 Shared6.427684.635769
286x52 Shared7.644484.142458
29E3 Shared2.16918.1125642
307x53 Shared3.697255.244559
31Lig Shared5.983756.5918214110
321x57 leukotriene_on4.732644.93346
332x43 leukotriene_on4.751872.7075248
342x46 leukotriene_on5.985424.618259
352x64 leukotriene_on6.997224.67345
363x29 leukotriene_on9.681047.5075245
375x39 leukotriene_on3.981116.695344
385x46 leukotriene_on5.0154.4125244
395x47 leukotriene_on9.108065.172358
405x64 leukotriene_on3.57255.895145
416x51 leukotriene_on9.12437.8925346
426x58 leukotriene_on5.474312.882354
437x52 leukotriene_on3.023752.855347
447x55 leukotriene_on2.660623.7175247
457x58 leukotriene_on0.52752.6075240
467x62 leukotriene_on3.275.23150
   
Orange: nodes, hubs and links specific of leukotriene_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of leukotriene_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner leukotriene_off Recurrence leukotriene_on Recurrence leukotriene_off Hub1? leukotriene_on Hub1? leukotriene_off Hub2? leukotriene_on Hub2? ConSurf1 ConSurf2
11x30 7x35 leukotriene_off23.41680YesNoNoNo43
21x35 7x35 leukotriene_off11.46590NoNoNoNo53
31x35 2x64 leukotriene_off15.85292.18171NoNoNoYes55
41x35 1x39 leukotriene_off10.09060NoNoYesNo57
57x35 Lig leukotriene_off25.90622.17175NoNoYesYes30
61x39 2x57 leukotriene_off38.71540YesNoNoNo77
71x43 2x57 leukotriene_off36.67382.73959YesNoNoNo57
81x43 1x47 leukotriene_off30.93280YesNoNoNo55
91x47 2x55 leukotriene_off27.10550NoNoNoNo55
102x51 2x55 leukotriene_off25.57570NoNoNoNo75
113x40 6x48 leukotriene_off1000NoNoYesYes79
123x40 5x50 leukotriene_off99.79742.46065NoNoYesYes79
133x41 5x50 leukotriene_off62.23357.25244NoNoYesYes69
143x41 4x49 leukotriene_off61.290NoNoNoNo67
153x42 4x49 leukotriene_off59.44568.41801YesNoNoNo77
167x49 7x53 leukotriene_off49.06720NoNoYesYes99
171x56 7x53 leukotriene_off14.87740YesNoYesYes69
182x43 7x53 leukotriene_off27.28150NoYesYesYes89
193x44 5x50 leukotriene_off80.6610.0796971NoNoYesYes79
203x44 5x54 leukotriene_off61.52990NoNoNoNo78
213x47 5x54 leukotriene_off60.43713.54652NoNoNoNo98
223x50 6x37 leukotriene_off27.68120YesNoNoNo97
233x46 6x37 leukotriene_off21.99890NoNoNoNo87
242x42 3x46 leukotriene_off16.46062.61008NoNoNoNo78
252x42 3x49 leukotriene_off13.39550NoNoNoNo78
263x49 I2x57 leukotriene_off11.84434.69217NoNoNoNo87
272x40 I1 leukotriene_off16.1940NoNoYesNo70
284x39 I1 leukotriene_off10.94880NoNoYesNo40
293x42 4x50 leukotriene_off15.34650YesNoYesNo79
302x63 2x64 leukotriene_off10.5650NoNoNoYes55
312x60 E2x51 leukotriene_off31.26330YesNoNoNo63
32E2x50 E2x51 leukotriene_off30.27190NoNoNoNo93
33E2 Lig leukotriene_off22.54260YesYesYesYes30
343x44 5x53 leukotriene_off27.78784.91134NoNoNoNo76
353x48 5x53 leukotriene_off26.35392.46065NoNoNoNo66
363x48 5x57 leukotriene_off20.93820NoNoNoNo66
376x55 Lig leukotriene_off45.57570YesNoYesYes50
385x40 6x56 leukotriene_off10.26120YesNoNoNo55
395x58 6x38 leukotriene_off11.73240YesYesNoNo94
406x55 7x34 leukotriene_off22.89980YesNoNoNo54
416x58 7x34 leukotriene_off13.13437.30225NoYesNoNo44
421x30 7x32 leukotriene_off15.6130YesNoNoNo43
437x28 7x32 leukotriene_off14.17380NoNoNoNo33
443x51 3x55 leukotriene_off10.30380YesNoNoNo87
456x35 6x38 leukotriene_off10.27720NoNoNoNo64
462x39 3x50 leukotriene_off12.06290NoNoYesNo79
471x39 2x60 leukotriene_off23.07570YesNoYesNo76
48E1x50 E2x50 leukotriene_off27.14823.21777YesYesNoNo89
491x39 2x61 Shared10.634310.8687YesNoNoNo77
506x48 Lig Shared99.440375.3138YesYesYesYes90
516x48 7x45 Shared18.518151.6637YesYesNoNo99
526x47 7x45 Shared15.820949.9402YesNoNoNo79
531x50 2x51 Shared24.051210.4702YesYesNoNo97
541x50 2x50 Shared21.364624.5567YesYesYesYes99
552x46 3x42 Shared46.90311.1875NoYesYesNo97
562x46 7x49 Shared45.900948.6651NoYesNoNo99
571x57 2x43 Shared25.67715.0229NoYesNoYes68
581x57 2x40 Shared17.867815.9494NoYesNoNo67
593x47 5x58 Shared59.333734.2399NoNoYesYes99
603x50 5x58 Shared42.48412.0442YesNoYesYes99
61E1x50 E1x52 Shared20.250525.0946YesYesYesYes87
622x60 Lig Shared41.588529.8267YesNoYesYes60
633x38 4x50 Shared10.927532.4965NoNoYesNo79
643x37 Lig Shared17.382765.4413YesYesYesYes70
653x51 5x57 Shared19.45124.0486YesNoNoNo86
665x40 6x55 Shared20.143915.1624YesNoYesNo55
677x42 Lig Shared17.3348100NoNoYesYes60
681x39 7x42 Shared16.689831.8589YesNoNoNo76
692x50 7x49 Shared21.215450.259YesYesNoNo99
701x38 7x36 leukotriene_on011.9247NoNoNoNo55
711x45 7x47 leukotriene_on1.6684410.4702NoNoNoNo67
721x38 7x39 leukotriene_on1.5724917.2544NoNoNoNo54
731x39 7x39 leukotriene_on019.7051YesNoNoNo74
742x64 Lig leukotriene_on011.7653NoYesYesYes50
751x46 7x47 leukotriene_on1.6684417.4836NoNoNoNo87
761x46 1x50 leukotriene_on022.2056NoNoYesYes89
772x53 7x42 leukotriene_on085.266NoNoNoNo66
782x53 7x46 leukotriene_on083.1739NoNoNoNo69
792x50 7x46 leukotriene_on4.7814582.8352YesYesNoNo99
802x50 7x50 leukotriene_on068.7886YesYesNoNo99
811x53 7x50 leukotriene_on076.3001NoNoNoNo89
821x53 7x55 leukotriene_on069.4361NoNoNoYes87
831x52 7x55 leukotriene_on010.9384NoNoNoYes67
847x55 7x62 leukotriene_on053.6661NoYesNoYes70
851x56 7x62 leukotriene_on010.3806YesNoNoYes60
861x56 1x60 leukotriene_on014.4252YesNoNoNo65
871x57 7x62 leukotriene_on030.8528NoYesNoYes60
887x61 7x62 leukotriene_on014.8237NoNoNoYes00
892x43 7x61 leukotriene_on012.5922NoYesNoNo80
902x39 2x43 leukotriene_on017.9817NoNoNoYes78
912x39 I2x57 leukotriene_on013.3293NoNoNoNo77
923x37 4x53 leukotriene_on044.1423YesYesNoNo77
933x38 4x53 leukotriene_on9.3976534.1602NoNoNoNo77
942x45 4x50 leukotriene_on0.10127929.2688NoNoYesNo99
952x45 4x46 leukotriene_on1.5884927.7645NoNoNoNo97
962x46 7x53 leukotriene_on035.8538NoYesYesYes99
972x60 3x29 leukotriene_on028.4021YesNoNoYes65
983x25 3x29 leukotriene_on041.7613NoNoNoYes95
993x25 E1x50 leukotriene_on0.23454234.1502NoNoYesYes98
1004x61 Lig leukotriene_on1.2366730.0458NoNoYesYes40
1013x29 4x61 leukotriene_on028.7308NoYesNoNo54
1025x43 Lig leukotriene_on052.6898NoNoYesYes50
1035x39 5x43 leukotriene_on045.9255NoYesNoNo45
1045x39 E2 leukotriene_on0.25053336.581NoYesYesYes43
1053x29 4x65 leukotriene_on1.2260112.0542NoYesNoNo54
1063x34 4x53 leukotriene_on7.8571412.0442YesYesNoNo57
1073x37 3x41 leukotriene_on016.8659YesYesNoNo76
1083x50 7x53 leukotriene_on013.5087YesNoYesYes99
1096x40 7x53 leukotriene_on026.7185NoNoYesYes79
1105x58 6x40 leukotriene_on030.8428YesYesNoNo97
1116x43 6x47 leukotriene_on047.4098NoNoYesNo67
1126x43 7x52 leukotriene_on046.6328NoNoNoYes67
1136x40 7x52 leukotriene_on1.6204736.571NoNoNoYes77
1143x47 5x57 leukotriene_on027.4656NoNoNoNo96
1153x51 5x61 leukotriene_on3.2356120.6117YesNoNoNo88
1162x41 4x46 leukotriene_on026.589NoNoNoNo77
1172x41 4x39 leukotriene_on025.9813NoNoNoNo74
1184x38 4x39 leukotriene_on021.6776NoNoNoNo54
1194x38 4x41 leukotriene_on1.6204719.3066NoNoNoNo54
1204x41 I2x56 leukotriene_on016.9157NoNoNoNo44
121I2x52 I2x56 leukotriene_on1.1940312.4427NoNoNoNo54
1225x36 E2 leukotriene_on5.0959521.6079NoNoYesYes33
1235x43 6x55 leukotriene_on1.7324119.0875NoNoYesNo55
1247x38 Lig leukotriene_on2.9424313.409NoNoYesYes50
1256x51 7x38 leukotriene_on1.6311311.4365NoYesNoNo65
1266x51 7x34 leukotriene_on014.2658NoYesNoNo64
1276x48 6x52 leukotriene_on024.7759YesYesYesYes98
1286x44 6x48 leukotriene_on1.6684422.7336NoNoYesYes99
1295x47 6x44 leukotriene_on011.6557NoYesNoNo89
1305x47 6x52 leukotriene_on5.1759114.0167NoYesYesYes88
1315x47 6x49 leukotriene_on4.493615.4015NoYesNoNo85
1325x61 5x65 leukotriene_on013.678NoNoNoNo88
1335x65 I3 leukotriene_on010.1614NoNoYesYes84
1346x36 7x52 leukotriene_on026.4893NoNoNoYes77
1356x36 7x58 leukotriene_on021.9865NoNoNoYes70
1366x32 7x58 leukotriene_on010.1016NoNoNoYes70
1372x41 I1x51 leukotriene_on3.0863517.1847NoNoNoNo76
1382x40 I1x51 leukotriene_on016.587NoNoNoNo76

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x352x64Shared11.82793.150021
1x392x60leukotriene_off5.75500021
1x397x42Shared5.7054.870021
2x533x35Shared9.614.850012
2x53Ligleukotriene_off4.300010
2x603x32leukotriene_off4.8862501011
2x60LigShared8.5387518.931010
E1x49E2Shared8.141254.610021
3x22E2Shared6.280425.961121
3x25E2x50Shared7.287.282122
3x294x65Shared11.28514.670012
3x29Ligleukotriene_off8.0770800010
3x32Ligleukotriene_off4.2401010
3x366x48Shared7.094583.490211
3x374x56Shared4.6910.550212
3x375x46Shared4.05753.750212
3x375x461leukotriene_off3.62500212
4x605x39Shared4.347923.050021
4x64E2Shared7.602518.270121
4x65E2x52Shared6.412515.850122
E2E2Shared43.175435.951111
E2E2x52Shared7.996678.341112
5x36E2Shared9.8808313.381121
5x39E2Shared3.8111.981111
5x35E2Shared5.99255.671121
5x406x55Shared8.931252.750021
5x436x55Shared6.39252.630011
6x446x48Shared11.35925.010221
6x487x45Shared7.026677.410212
6x48LigShared5.613.540210
6x516x52Shared8.482925.441022
6x516x55Shared13.532515.121021
6x517x38Shared5.35754.841021
6x557x34leukotriene_off4.6066701012
7x35LigShared4.486676.830010
7x38LigShared7.845426.210010
7x42LigShared5.483.030010
6x526x55leukotriene_off3.8933301021
3x33LigShared9.281672.131010
3x37LigShared4.56254.370210
4x61LigShared3.672.781010
E2Ligleukotriene_off4.832501110
5x39Ligleukotriene_off3.7854201110
6x55Ligleukotriene_off9.062501010
1x351x39leukotriene_off7.017500022
1x357x35leukotriene_off6.552500021
2x60E2x51leukotriene_off9.6220801012
2x632x64leukotriene_off5.6262500021
3x334x61leukotriene_off5.0412501011
3x376x52leukotriene_off3.9462500212
3x406x48leukotriene_off7.2745800021
E2x50E2x51leukotriene_off4.8562502122
6x456x48leukotriene_off4.2429200021
1x322x64Shared3.53751.50021
1x307x35leukotriene_off2.5666700021
6x487x41Shared2.385835.190212
5x29E2leukotriene_off1.7187500021
5x31E2leukotriene_off0.6500021
1x362x64leukotriene_on02.850021
2x537x42leukotriene_on02.620011
2x537x46leukotriene_on06.460012
2x563x32leukotriene_on06.760021
2x603x29leukotriene_on06.791011
2x64Ligleukotriene_on011.180010
3x253x29leukotriene_on04.422121
3x294x61leukotriene_on04.150011
3x36Ligleukotriene_on05.270210
3x374x53leukotriene_on02.540212
4x565x46leukotriene_on02.950222
4x645x35leukotriene_on06.530122
4x645x39leukotriene_on04.360121
4x65E2x51leukotriene_on04.280122
E2E2x50leukotriene_on03.421112
E2E2x51leukotriene_on08.991112
E2x51E2x52leukotriene_on04.330122
5x395x43leukotriene_on07.391111
5x43Ligleukotriene_on08.240010
6x486x52leukotriene_on03.170212
6x517x34leukotriene_on06.171022
3x323x33leukotriene_on01.961011
3x373x41leukotriene_on01.930212
5x4616x52leukotriene_on01.590022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
leukotriene_off blt_off
cyslt_off
leukotriene_on blt_on
Network Difference
Value leukotriene_off leukotriene_on
Imin 3.59625 2.54
Number of Linked Nodes 288 236
Number of Specific Nodes 57 (19.79%) 5  (2.12%)
Number of Shared Nodes 231 (80.21%) 231  (97.88%)
Number of Links 308 260
Number of Specific Links 173 (56.17%) 125  (48.08%)
Number of Shared Links 135 (43.83%) 135  (51.92%)
Number of Hubs 31 31
Number of Specific Hubs 15 (48.39%) 15  (48.39%)
Number of Shared Hubs 16 (51.61%) 16  (51.61%)
Average % Shared Neighbours (Jaccard) 29.99
Average % Shared Neighbours (Otsuka) 38.43
Average % Shared Neighbours (Overlap Coefficient) 46.95
Average % Shared Cliques (k3-6) 77.00
Graphlets Similarity 0.51713
Paths Difference
Value leukotriene_off leukotriene_on
Number Of Nodes in MetaPath 67 85
Specific Nodes in MetaPath 29 (43.28%) 47  (55.29%)
Shared Nodes in MetaPath 231 (80.21%) 231  (80.21%)
Number Of Links MetaPath 69 90
Specific Links in MetaPath 48 (69.57%) 69  (76.67%)
Shared Links in MetaPath 135 (43.83%) 135  (43.83%)
Number of Shortest Paths 44675 31498
Length Of Smallest Path 3 3
Average Path Length 12.7308 11.4841
Length of Longest Path 31 30
Minimum Path Strength 0.6925 1.38
Average Path Strength 5.11069 4.86325
Maximum Path Strength 13.8146 15.825
Minimum Path Correlation 0.700417 0.7
Average Path Correlation 0.910376 0.920745
Maximum Path Correlation 0.987917 0.99
Minimum % Of Corr. Nodes 4 4.34783
Average % Of Corr. Nodes 44.4777 53.4113
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 38.0155 36.4988
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download leukotriene_off_on.zip<



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