Orange: nodes, hubs and links specific of lipid_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lipid_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner lipid_off Avg Int. Strength lipid_on Avg Int. Strength lipid_off Num Of Links lipid_on Num Of Links ConSurf
12x64 lipid_off3010413
23x33 lipid_off2020414
33x37 lipid_off42.540436
43x50 lipid_off600629
53x51 lipid_off205438
66x58 lipid_off3020423
77x45 lipid_off1018.0952439
87x49 lipid_off250539
98x48 lipid_off00424
10E1x50 lipid_off6020530
117x26 lipid_off00410
12Lig Shared10010011120
13NT Shared70501475
141x50 Shared015.5556449
152x40 Shared2023.9683548
162x42 Shared203.33333448
172x50 Shared1060459
183x25 Shared209.52381449
193x49 Shared1020449
20E2 Shared10010024285
215x58 Shared21.666760669
226x48 Shared6568.3333558
23E3 Shared3056.6667661
247x53 Shared1063.8889459
251x36 lipid_on00145
261x56 lipid_on00348
272x41 lipid_on00344
282x46 lipid_on038.3333249
292x51 lipid_on00247
302x57 lipid_on055.5556346
315x51 lipid_on030357
325x60 lipid_on010345
335x64 lipid_on00256
345x67 lipid_on00145
35I3 lipid_on020363
366x31 lipid_on00245
376x59 lipid_on00343
388x47 lipid_on100248
39E1x52 lipid_on1020340
   
Orange: nodes, hubs and links specific of lipid_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lipid_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner lipid_off Recurrence lipid_on Recurrence lipid_off Hub1? lipid_on Hub1? lipid_off Hub2? lipid_on Hub2? ConSurf1 ConSurf2
11x35 1x39 lipid_off23.09550NoNoNoNo56
21x35 2x64 lipid_off26.8610NoNoYesNo53
32x64 Lig lipid_off27.14050.746817YesNoYesYes30
41x39 7x42 lipid_off16.63710NoNoNoNo66
51x49 7x50 lipid_off12.50525.63015NoNoNoNo89
61x50 7x50 lipid_off13.85736.98448YesYesNoNo99
76x48 7x41 lipid_off99.05581.38916YesYesNoNo87
86x51 7x41 lipid_off99.16910NoNoNoNo67
96x51 6x55 lipid_off1001.38916NoNoNoNo66
106x55 Lig lipid_off68.04020NoNoYesYes60
112x39 2x40 lipid_off30.40370NoNoYesYes88
122x39 3x50 lipid_off33.64050NoNoYesNo89
133x49 3x50 lipid_off40.60880YesYesYesNo99
143x46 6x37 lipid_off57.89550NoNoNoNo98
155x58 6x41 lipid_off85.95381.08733YesYesNoNo97
163x43 6x41 lipid_off86.60720NoNoNoNo87
173x43 6x44 lipid_off87.2040NoNoNoNo89
182x38 4x42 lipid_off10.04279.90984NoNoNoNo57
195x40 6x55 lipid_off33.80295.5218NoNoNoNo56
205x40 E2 lipid_off31.9560NoNoYesYes55
216x51 6x52 lipid_off13.85730NoNoNoNo66
225x47 6x52 lipid_off12.50521.38916NoNoNoNo76
237x34 E2 lipid_off17.92121.45494NoNoYesYes45
246x54 7x34 lipid_off17.12818.12212NoNoNoNo44
256x54 7x37 lipid_off11.48546.78714NoNoNoNo44
263x51 5x61 lipid_off11.50430YesNoNoNo89
273x54 5x61 lipid_off10.14474.4809NoNoNoNo99
28E1x50 E1x52 lipid_off12.44850YesNoNoYes00
293x25 E2 lipid_off10.79053.94691YesYesYesYes95
303x25 E1x50 lipid_off13.12084.3919YesYesYesNo90
31Lig NT lipid_off14.75620YesYesYesYes05
32E2 E3 lipid_off15.74955.63402YesYesYesYes51
332x57 7x42 Shared15.719310.9237NoYesNoNo66
341x50 2x50 Shared21.811421.3714YesYesYesYes99
352x50 7x49 Shared28.23212.9977YesYesYesNo99
367x45 7x49 Shared55.346197.4384YesNoYesNo99
376x48 7x45 Shared58.397996.9663YesYesYesNo89
382x42 3x49 Shared54.749417.9081YesYesYesYes89
392x42 3x46 Shared56.977821.0811YesYesNoNo89
405x58 6x37 Shared61.05322.4858YesYesNoNo98
416x44 6x48 Shared87.793212.2548NoNoYesYes98
422x38 3x49 Shared13.407911.9297NoNoYesYes59
432x46 3x42 Shared15.201922.6251NoYesNoNo98
442x46 7x49 Shared16.538984.6612NoYesYesNo99
45E2 Lig Shared36.186145.908YesYesYesYes50
463x47 5x58 Shared33.882278.7757NoNoYesYes99
473x47 5x57 Shared29.032777.5607NoNoNoNo96
483x51 5x57 Shared27.801576.9415YesNoNoNo86
491x60 I1x50 Shared13.113310.1807NoNoNoNo78
502x40 I1x50 Shared22.1411.6511YesYesNoNo88
512x57 2x61 lipid_on012.3283NoYesNoNo66
522x57 Lig lipid_on025.7517NoYesYesYes60
533x36 6x48 lipid_on9.1777893.4837NoNoYesYes68
543x36 Lig lipid_on092.8723NoNoYesYes60
553x43 7x53 lipid_on099.7949NoNoYesYes89
562x46 3x43 lipid_on0100NoYesNoNo98
572x40 8x47 lipid_on014.4759YesYesNoYes88
586x37 8x47 lipid_on021.7854NoNoNoYes88
593x50 5x58 lipid_on090.984YesNoYesYes99
603x50 7x53 lipid_on091.1349YesNoYesYes99
613x46 7x53 lipid_on022.1994NoNoYesYes99
622x45 3x42 lipid_on8.4035212.2548NoNoNoNo98
632x60 3x28 lipid_on010.4632NoNoNoNo45
642x60 Lig lipid_on0.72893516.1669NoNoYesYes40
653x37 4x56 lipid_on3.7013311.0397YesNoNoNo65
663x37 5x43 lipid_on8.3128712.9397YesNoNoNo65
675x43 Lig lipid_on012.959NoNoYesYes50
683x51 3x55 lipid_on9.2759841.5896YesNoNoNo86
693x51 5x60 lipid_on7.0211935.1855YesNoNoYes85
703x55 5x64 lipid_on031.4902NoNoNoYes66
715x60 5x64 lipid_on4.2338630.9097NoYesNoYes56
723x55 3x56 lipid_on7.9087512.8623NoNoNoNo65
736x31 6x32 lipid_on017.4167NoYesNoNo58
746x31 I3 lipid_on025.9297NoYesNoYes53
755x68 I3 lipid_on4.3282834.8412NoNoNoYes73
765x64 5x68 lipid_on036.9771NoYesNoNo67
775x67 6x30 lipid_on014.0696NoYesNoNo57
785x64 5x67 lipid_on018.7943NoYesNoYes65
792x46 2x50 lipid_on015.8225NoYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x60LigShared10.85395.681380010
2x64LigShared4.42055.150231010
3x29LigShared5.567423.162071110
3x32Liglipid_off10.002300010
3x33LigShared5.513177.79370010
E2LigShared9.9149.932331110
6x55Liglipid_off4.5626700010
7x38LigShared10.82585.677120010
NTNTShared26.069818.44441111
E2NTShared29.497218.70261111
2x64NTlipid_off3.734501011
3x25NTlipid_off4.7041701121
7x31NTlipid_off4.08201021
1x397x42lipid_off4.1336700022
2x577x42Shared5.0354.208320012
3x22E2Shared7.041584.647310121
3x25E2Shared12.25726.1031121
3x26E2Shared7.416173.82660121
3x29E2Shared4.2845.277221111
3x335x43lipid_off3.83100011
3x366x48Shared9.141423.999650012
3x375x43Shared4.3083.230330021
4x60E2Shared3.65556.094981121
4x605x39Shared8.614087.127361122
E2E2Shared66.490644.35841111
5x36E2Shared10.49128.670441121
5x39E2Shared7.9647.528391121
6x58E2Shared9.869087.165751121
E2E3Shared3.68053.100671112
7x34E2Shared4.865424.723391111
5x40E2lipid_off3.63901011
5x406x55Shared4.742754.759941011
5x406x59lipid_off6.6792501012
LigNTlipid_off5.3718301101
7x39Liglipid_off4.955500010
1x351x39lipid_off3.772500022
1x432x57Shared4.754672.262970021
6x516x55Shared5.96356.289130021
7x27NTlipid_off5.03900021
1x277x31lipid_off4.1102500022
1x277x35lipid_off3.7948300021
1x352x64lipid_off7.3395800021
1x357x35Shared3.88651.405620021
2x632x64lipid_off3.6742500021
E1x49E2Shared4.691251.1961121
3x363x37lipid_off3.915500012
E2E2x52Shared4.101333.8611112
E2x51Liglipid_off3.6222500110
6x587x31lipid_off4.4631701122
6x587x34lipid_off11.418601121
E3E3Shared5.7635.237431122
6x547x34Shared3.599673.272980021
3x294x65lipid_off3.57501112
1x317x35lipid_off3.567500021
5x376x59Shared3.544753.008430122
1x392x61Shared3.512672.866940022
3x334x61lipid_off3.4842500012
E1x501NTShared3.29652.051220021
5x38E2Shared3.2883.085530021
4x59E2lipid_off3.1100021
3x334x57lipid_off3.08300012
1x387x39Shared2.819675.46250021
1x28NTlipid_off2.56301021
7x28NTlipid_off2.51801021
E1x48NTShared2.44850.81051121
2x532x57lipid_off2.3776700021
7x287x32lipid_off2.12701022
5x35E2Shared1.84251.6351021
4x64E2Shared1.64259.0130021
4x63E2Shared1.00950.7022940121
5x345x35lipid_off1.00200022
5x32E2Shared0.92252.750021
6x64E2lipid_off0.69801021
7x24NTlipid_off0.30601021
5x28NTlipid_off0.28800021
7x32NTlipid_on03.589950121
2x572x61lipid_on03.220210012
2x57Liglipid_on04.121330010
2x603x28lipid_on05.403310012
3x253x29lipid_on04.365071121
3x36Liglipid_on03.968040010
7x31E2lipid_on03.407831021
5x395x43lipid_on02.989391121
5x43Liglipid_on07.043820010
7x34Liglipid_on04.327641110
2x603x32lipid_on03.345660011
3x223x26lipid_on04.122970122
4x65E2lipid_on04.4660121
E2E2x51lipid_on04.249331111
E3NTlipid_on03.510031121
E2x51E2x52lipid_on03.3220112
4x65E2x52lipid_on03.170122
7x35Liglipid_on02.800810010
5x40Liglipid_on02.772331010
2x563x32lipid_on02.708890021
1x397x39lipid_on02.659620021
5x34E2lipid_on02.5150021
5x37E2lipid_on02.476850121
3x264x61lipid_on02.470860122
5x446x55lipid_on02.359570021
4x594x60lipid_on02.299310022
7x28E2lipid_on01.5431021
1x281x31lipid_on01.062171022
4x66E2lipid_on00.1370121

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
lipid_off cannabinoid_off
paf_off
lpl_off
prostanoid_off
leukotriene_off
lipid_on cannabinoid_on
ffa_on
lpl_on
prostanoid_on
leukotriene_on
Network Difference
Value lipid_off lipid_on
Imin 3.61392 2.95627
Number of Linked Nodes 310 313
Number of Specific Nodes 18 (5.81%) 21  (6.71%)
Number of Shared Nodes 292 (94.19%) 292  (93.29%)
Number of Links 324 328
Number of Specific Links 152 (46.91%) 156  (47.56%)
Number of Shared Links 172 (53.09%) 172  (52.44%)
Number of Hubs 24 28
Number of Specific Hubs 11 (45.83%) 15  (53.57%)
Number of Shared Hubs 13 (54.17%) 13  (46.43%)
Average % Shared Neighbours (Jaccard) 37.87
Average % Shared Neighbours (Otsuka) 46.30
Average % Shared Neighbours (Overlap Coefficient) 54.94
Average % Shared Cliques (k3-6) 80.36
Graphlets Similarity 0.443733
Paths Difference
Value lipid_off lipid_on
Number Of Nodes in MetaPath 50 46
Specific Nodes in MetaPath 24 (48.00%) 20  (43.48%)
Shared Nodes in MetaPath 292 (94.19%) 292  (94.19%)
Number Of Links MetaPath 50 47
Specific Links in MetaPath 32 (64.00%) 29  (61.70%)
Shared Links in MetaPath 172 (53.09%) 172  (53.09%)
Number of Shortest Paths 50163 49290
Length Of Smallest Path 3 3
Average Path Length 14.3117 14.4203
Length of Longest Path 34 31
Minimum Path Strength 0.454833 0.369339
Average Path Strength 4.7161 4.17795
Maximum Path Strength 19.9942 13.6865
Minimum Path Correlation 0.702833 0.702127
Average Path Correlation 0.895039 0.898315
Maximum Path Correlation 0.985333 0.988254
Minimum % Of Corr. Nodes 3.125 3.57143
Average % Of Corr. Nodes 37.9424 37.264
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 34.1201 35.8435
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download lipid_off_on.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.