Orange: nodes, hubs and links specific of lpa1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lpa1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner lpa1_off Avg Int. Strength lpa1_on Avg Int. Strength lpa1_off Num Of Links lpa1_on Num Of Links ConSurf
1NT.F32 lpa1_off00532
2NT.K39 lpa1_off33.33330438
3NT.W45 lpa1_off00531
41x36 lpa1_off00414
52x38 lpa1_off33.33330436
62x45 lpa1_off1000439
73x32 lpa1_off00416
83x50 lpa1_off1000539
94x49 lpa1_off00537
10E2.W186 lpa1_off33.33330436
11E2.M198 lpa1_off10050433
126x45 lpa1_off00436
137x42 lpa1_off33.33330527
147x56 lpa1_off33.33330437
15Lig Shared10010014130
16NT.Y34 Shared100100676
171x50 Shared10050449
18I1x50 Shared100100658
192x46 Shared050449
203x25 Shared100100659
213x33 Shared0100445
223x51 Shared33.333350447
23E2.Y202 Shared100100774
245x39 Shared10050547
255x43 Shared100100546
265x47 Shared100100447
275x58 Shared33.33330449
286x44 Shared10050449
296x48 Shared100100568
307x37 Shared10050445
318x54 Shared66.66670446
32NT.N46 lpa1_on00352
331x40 lpa1_on00244
341x60 lpa1_on00346
352x50 lpa1_on0100359
362x52 lpa1_on00347
372x57 lpa1_on0100357
383x28 lpa1_on66.6667100376
393x29 lpa1_on050344
403x34 lpa1_on00246
413x42 lpa1_on050348
423x43 lpa1_on00348
433x49 lpa1_on00348
443x55 lpa1_on050346
45E2.I189 lpa1_on050243
465x62 lpa1_on00146
476x30 lpa1_on00247
486x58 lpa1_on0100344
497x30 lpa1_on00044
507x53 lpa1_on0100269
518x50 lpa1_on00348
   
Orange: nodes, hubs and links specific of lpa1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lpa1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner lpa1_off Recurrence lpa1_on Recurrence lpa1_off Hub1? lpa1_on Hub1? lpa1_off Hub2? lpa1_on Hub2? ConSurf1 ConSurf2
16x48 Lig lpa1_off97.48750YesYesYesYes80
2E1.T109 Lig lpa1_off19.41247.7631NoNoYesYes50
33x26 E2.N187 lpa1_off13.20660NoNoNoNo56
4Lig NT.K39 lpa1_off10.80150.880759YesYesYesNo08
5E1.T109 E1x47 lpa1_off18.48226.9755NoNoNoNo55
6E1x48 NT.W45 lpa1_off17.07484.67197NoNoYesNo41
7E1x47 E1x48 lpa1_off19.4765.82656NoNoNoNo54
82x57 3x32 lpa1_off12.67790NoYesYesNo76
93x32 Lig lpa1_off22.2470YesNoYesYes60
102x46 7x49 lpa1_off87.88660YesYesNoNo99
112x46 3x43 lpa1_off95.08239.10682YesYesNoYes98
123x43 6x44 lpa1_off1000NoYesYesYes89
132x50 7x46 lpa1_off10.49141.17999NoYesNoNo99
141x47 2x54 lpa1_off14.24430NoNoNoNo67
151x46 2x54 lpa1_off16.61761.19693NoNoNoNo87
168x50 8x54 lpa1_off10.49145.72211NoYesYesYes86
172x40 I1x50 lpa1_off21.49567.61631NoNoYesYes98
182x40 6x33 lpa1_off38.6340NoNoNoNo97
192x43 6x33 lpa1_off64.89230NoNoNoNo87
202x43 7x53 lpa1_off65.68341.44535NoNoNoYes89
216x40 7x53 lpa1_off66.35134.14126NoNoNoYes89
226x40 7x49 lpa1_off73.36810NoNoNoNo89
232x38 4x39 lpa1_off24.00410YesNoNoNo63
242x39 3x49 lpa1_off36.24475.82656NoNoNoYes88
252x39 2x40 lpa1_off20.08036.3488NoNoNoNo89
262x39 3x50 lpa1_off19.24940NoNoYesNo89
273x50 6x33 lpa1_off26.7830YesNoNoNo97
285x58 6x41 lpa1_off21.17750YesYesNoNo97
293x43 6x41 lpa1_off27.84450NoYesNoNo87
302x45 3x42 lpa1_off10.78565.01073YesNoNoYes98
313x28 E1x52 lpa1_off16.45074.59011NoYesNoNo66
323x47 5x58 lpa1_off14.6182.08051NoNoYesYes89
333x47 5x57 lpa1_off13.43330NoNoNoNo86
344x39 I2x55 lpa1_off15.38520NoNoNoNo33
355x39 5x43 lpa1_off12.90850YesYesYesYes76
366x55 Lig lpa1_off13.60821.10659NoNoYesYes60
375x51 6x45 lpa1_off13.55256.30646NoNoYesNo56
385x51 6x44 lpa1_off14.73728.90639NoNoYesYes59
396x40 7x52 lpa1_off11.00820NoNoNoNo88
403x29 Lig Shared30.830126.8349NoYesYesYes40
413x25 3x29 Shared20.310915.9101YesYesNoYes94
423x25 E2.L201 Shared16.005432.382YesYesNoNo91
43E2.L201 NT.F33 Shared13.703617.3668NoNoNoNo16
44NT.F32 NT.F33 Shared12.471215.4302YesNoNoNo26
453x26 E2.Y202 Shared17.309410.2473NoNoYesYes54
463x33 Lig Shared11.664124.6725YesYesYesYes50
473x33 E2.Y202 Shared11.417710.3263YesYesYesYes54
481x50 2x50 Shared17.734831.9049YesYesNoYes99
492x50 7x49 Shared29.255835.555NoYesNoNo99
506x44 6x48 Shared99.379852.4757YesYesYesYes98
518x50 I1x50 Shared11.568713.6207NoYesYesYes88
522x38 3x49 Shared30.265615.0463YesNoNoYes68
532x46 3x42 Shared19.237514.6087YesYesNoYes98
543x25 3x28 Shared11.465416.8925YesYesNoYes96
555x43 Lig Shared17.2378100YesYesYesYes60
563x51 5x57 Shared12.240663.6094YesYesNoNo76
57E2.I189 E2.L201 lpa1_on013.7506NoYesNoNo31
583x28 Lig lpa1_on023.4163NoYesYesYes60
59NT.L41 NT.Y34 lpa1_on7.223511.0434NoNoYesYes26
607x34 Lig lpa1_on1.1966329.3953NoNoYesYes40
617x34 E2.M198 lpa1_on0.31406529.9063NoNoYesNo43
626x58 E2.M198 lpa1_on3.9198523.7099NoYesYesNo43
632x57 7x38 lpa1_on011.2494NoYesNoNo76
647x38 Lig lpa1_on1.2761412.2431NoNoYesYes60
652x57 7x39 lpa1_on015.1536NoYesNoNo76
661x42 7x39 lpa1_on011.7406NoNoNoNo76
677x45 7x49 lpa1_on058.3531NoNoNoNo99
686x48 7x45 lpa1_on060.4026YesYesNoNo89
695x43 6x48 lpa1_on099.0233YesYesYesYes68
701x50 2x47 lpa1_on1.2403625.5815YesYesNoNo99
711x57 8x50 lpa1_on020.0542NoNoNoYes78
721x53 1x57 lpa1_on021.8948NoNoNoNo97
731x53 2x47 lpa1_on022.8122NoNoNoNo99
744x42 4x43 lpa1_on021.6943NoNoNoNo71
754x43 4x47 lpa1_on025.7848NoNoNoNo14
764x47 4x48 lpa1_on027.1963NoNoNoNo43
774x48 4x52 lpa1_on1.2681930.0531NoNoNoNo34
784x52 5x46 lpa1_on031.4815NoNoNoNo45
795x46 5x50 lpa1_on032.9212NoNoNoNo57
803x40 5x50 lpa1_on2.9776694.532NoNoNoNo87
813x40 5x47 lpa1_on4.4565546.9089NoNoYesYes87
825x47 6x48 lpa1_on049.5907YesYesYesYes78
833x40 6x44 lpa1_on048.9386NoNoYesYes89
842x38 4x42 lpa1_on017.0562YesNoNoNo67
853x43 7x53 lpa1_on017.714NoYesNoYes89
863x43 7x49 lpa1_on025.096NoYesNoNo89
873x34 4x53 lpa1_on011.9523NoYesNoNo68
883x37 4x53 lpa1_on012.994NoNoNoNo68
893x37 5x43 lpa1_on4.2895813.9425NoNoYesYes66
902x46 2x50 lpa1_on013.1465YesYesNoYes99
912x57 7x42 lpa1_on8.9568315.5742NoYesYesNo77
923x36 6x48 lpa1_on4.5519616.8756NoNoYesYes78
933x44 5x50 lpa1_on069.4586NoNoNoNo77
945x53 5x57 lpa1_on065.0802NoNoNoNo56
953x44 5x53 lpa1_on066.5453NoNoNoNo75
963x51 3x55 lpa1_on2.5244532.5768YesYesNoYes76
973x51 5x61 lpa1_on7.3904727.9754YesYesNoNo79
983x54 3x55 lpa1_on026.6147NoNoNoYes86
993x54 5x61 lpa1_on1.2642126.6006NoNoNoNo89
1006x58 E2.S196 lpa1_on010.9474NoYesNoNo45
1015x62 6x33 lpa1_on041.0682NoYesNoNo67
1025x65 6x33 lpa1_on043.8911NoNoNoNo77
1033x54 5x65 lpa1_on050.0395NoNoNoNo87
1045x62 5x66 lpa1_on028.3226NoYesNoNo60
1055x66 6x30 lpa1_on025.1186NoNoNoYes07
1063x33 5x39 lpa1_on012.6468YesYesYesYes57
1073x29 E2.Y202 lpa1_on9.8592710.5832NoYesYesYes44
108Lig NT.Y34 lpa1_on015.1056YesYesYesYes06
1093x36 7x42 lpa1_on015.8085NoNoYesNo77

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
E1.T109LigShared6.853336.290110
3x29LigShared13.2910.9051110
3x32Liglpa1_off4.8533300010
3x33LigShared6.213336.281110
E2.M198Liglpa1_off7.8833301010
5x43LigShared5.6110.541110
6x48Liglpa1_off6.5866700110
6x51Liglpa1_off6.4833300010
6x55LigShared11.61673.9250110
7x34LigShared12.663314.5351110
7x35LigShared5.096678.530110
7x38LigShared14.026712.7650010
NT.I30NT.Y34Shared8.863332.421021
3x25NT.I30lpa1_off6.2666701122
NT.K39NT.Y34Shared5.978.361111
NT.L41NT.Y34Shared8.986675.8650021
E1x50NT.Y34Shared4.994.370111
3x25NT.Y34lpa1_off9.6501121
E2.P200NT.Y34Shared19.00677.650021
NT.H40NT.K39lpa1_off5.6766700021
7x34NT.K39Shared94.7251111
2x603x28Shared4.866.680021
2x603x32lpa1_off5.7100021
2x63E1x52lpa1_off12.3600022
3x28E1x52Shared4.864.860112
3x253x28Shared9.3333371121
3x253x29Shared10.586715.331121
3x25E2.Y202Shared5.466673.861122
3x29E2.Y202Shared9.026.7651112
3x33E2.Y202Shared6.133336.91112
3x335x43lpa1_off6.701111
3x365x47lpa1_off5.4900022
3x366x48Shared12.916.830021
3x374x56Shared9.036.0250122
3x375x43Shared6.066.060121
5x40E2.S196lpa1_off4.500112
6x54E2.M198Shared7.074.9450021
6x58E2.M198Shared7.393339.010021
7x34E2.M198Shared6.7666711.5051111
5x39E2.Y202Shared4.965.461122
5x395x43lpa1_off9.9666701121
5x406x55Shared4.154.8450111
5x435x47lpa1_off7.9101112
6x446x48Shared16.036716.540121
6x447x45lpa1_off7.6533300122
6x476x48lpa1_off3.9200021
6x477x45Shared5.773339.450022
6x487x41Shared10.373.240112
6x517x37Shared4.523.010012
6x547x37Shared9.748.5250022
LigNT.K39Shared4.5533310.031101
2x573x32lpa1_off3.6300021
2x563x32Shared2.163333.250021
1x35Liglpa1_off1.8233300010
E1.T109E1x47Shared1.823.640112
E1x47E1x50lpa1_off1.8200021
3x303x33Shared1.684.190021
7x357x36lpa1_off1.6533300112
5x446x55lpa1_off1.5800021
LigNT.Y34lpa1_on03.3351101
1x357x35lpa1_on08.350011
2x577x38lpa1_on09.9650021
2x633x28lpa1_on04.820021
7x35E1.T109lpa1_on04.5050111
3x28E1x50lpa1_on04.5250111
E1x50Liglpa1_on06.840110
3x25E2.P200lpa1_on03.3751122
3x28Liglpa1_on06.470110
3x335x39lpa1_on06.91112
4x565x43lpa1_on04.070121
6x58E2.S196lpa1_on05.1550022
5x40Liglpa1_on03.9350110
5x436x48lpa1_on05.1551111
5x476x44lpa1_on07.250122
5x476x48lpa1_on07.910121
6x487x45lpa1_on010.7350112
3x283x29lpa1_on04.6750111
1x357x36lpa1_on00.6550012
NT.N35NT.Y34lpa1_on00.580021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
lpa1_off 4Z36-LPA1-ONO-3080573
4Z35-LPA1-ONO-9910539
4Z34-LPA1-ONO-9780307
lpa1_on 7TD1-LPA1-LPA-Gi1/β1/γ2
7YU3-LPA1-ONO-0740556-Gi1/β1/γ2
Network Difference
Value lpa1_off lpa1_on
Imin 3.80333 3.07
Number of Linked Nodes 277 285
Number of Specific Nodes 13 (4.69%) 21  (7.37%)
Number of Shared Nodes 264 (95.31%) 264  (92.63%)
Number of Links 299 314
Number of Specific Links 143 (47.83%) 158  (50.32%)
Number of Shared Links 156 (52.17%) 156  (49.68%)
Number of Hubs 31 37
Number of Specific Hubs 14 (45.16%) 20  (54.05%)
Number of Shared Hubs 17 (54.84%) 17  (45.95%)
Average % Shared Neighbours (Jaccard) 34.51
Average % Shared Neighbours (Otsuka) 44.39
Average % Shared Neighbours (Overlap Coefficient) 53.56
Average % Shared Cliques (k3-6) 78.33
Graphlets Similarity 0.503514
Paths Difference
Value lpa1_off lpa1_on
Number Of Nodes in MetaPath 57 66
Specific Nodes in MetaPath 28 (49.12%) 37  (56.06%)
Shared Nodes in MetaPath 264 (95.31%) 264  (95.31%)
Number Of Links MetaPath 56 70
Specific Links in MetaPath 39 (69.64%) 53  (75.71%)
Shared Links in MetaPath 156 (52.17%) 156  (52.17%)
Number of Shortest Paths 48586 74984
Length Of Smallest Path 3 3
Average Path Length 13.103 14.5928
Length of Longest Path 28 31
Minimum Path Strength 0.973333 0.68
Average Path Strength 6.76859 6.21542
Maximum Path Strength 16.38 16.5633
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.91403 0.927079
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.34783 3.7037
Average % Of Corr. Nodes 45.729 47.2507
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 35.3261 38.7484
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download lpa1_off_on.zip<



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