Orange: nodes, hubs and links specific of lpl_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lpl_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner lpl_off Avg Int. Strength lpl_on Avg Int. Strength lpl_off Num Of Links lpl_on Num Of Links ConSurf
12x39 lpl_off00418
22x41 lpl_off00434
33x50 lpl_off500539
45x47 lpl_off10050537
55x58 lpl_off027.7778439
66x54 lpl_off00414
7E3 lpl_off5044.4444422
87x37 lpl_off500434
97x56 lpl_off16.66670437
10Lig Shared10010014170
11NT Shared10010018146
12I1x50 Shared10050648
132x42 Shared016.6667458
142x57 Shared5077.7778476
153x25 Shared10047.619449
163x28 Shared5095.2381676
173x29 Shared5045.6349545
183x33 Shared050445
193x49 Shared021.4286459
203x51 Shared025448
214x50 Shared00549
22E2 Shared10010023174
235x39 Shared5050547
246x44 Shared10025449
256x48 Shared10083.3333668
267x45 Shared023.8095449
278x54 Shared00447
281x46 lpl_on00347
291x50 lpl_on7527.7778359
301x59 lpl_on00246
312x40 lpl_on019.8413359
322x50 lpl_on050359
333x37 lpl_on00346
343x44 lpl_on00147
354x41 lpl_on00145
364x42 lpl_on00247
375x62 lpl_on250346
386x28 lpl_on00145
396x52 lpl_on00246
407x53 lpl_on5077.7778269
418x50 lpl_on00248
426x26 lpl_on00344
   
Orange: nodes, hubs and links specific of lpl_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lpl_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner lpl_off Recurrence lpl_on Recurrence lpl_off Hub1? lpl_on Hub1? lpl_off Hub2? lpl_on Hub2? ConSurf1 ConSurf2
11x39 7x42 lpl_off10.49240NoNoNoNo67
22x57 Lig lpl_off21.61240YesYesYesYes60
32x46 7x49 lpl_off52.25480NoNoNoNo99
43x43 6x44 lpl_off1000NoNoYesYes99
56x44 6x48 lpl_off95.32019.37228YesYesYesYes98
66x48 Lig lpl_off88.5450YesYesYesYes80
71x50 2x47 lpl_off27.72285.00348NoYesNoNo99
81x53 8x54 lpl_off16.99640NoNoYesYes97
91x53 2x47 lpl_off18.36840NoNoNoNo99
102x39 2x40 lpl_off20.60730YesNoNoYes89
112x39 3x50 lpl_off47.72390YesNoYesNo89
123x50 6x34 lpl_off69.57560YesNoNoNo98
135x62 6x34 lpl_off79.8662.62128NoYesNoNo68
145x58 5x62 lpl_off81.22740YesNoNoYes96
155x58 6x41 lpl_off83.63110YesNoNoNo97
163x43 6x41 lpl_off85.54560NoNoNoNo97
172x40 6x33 lpl_off18.59180NoYesNoNo98
183x50 6x33 lpl_off19.68730YesNoNoNo98
192x41 4x42 lpl_off13.98115.32951YesNoNoYes47
202x39 3x49 lpl_off30.52541.30847YesNoYesYes89
216x40 7x49 lpl_off14.18320NoNoNoNo89
222x45 4x50 lpl_off15.96477.99426NoNoYesYes99
233x28 E1x52 lpl_off11.796.22066YesYesNoNo65
246x48 6x52 lpl_off10.67330YesYesNoYes86
253x37 5x47 lpl_off14.0130NoYesYesNo67
265x61 6x34 lpl_off18.00150NoNoNoNo98
276x40 7x52 lpl_off10.3010NoNoNoNo88
286x54 E2 lpl_off12.0240YesNoYesYes44
298x49 I1x50 lpl_off12.65690NoNoYesYes78
306x29 8x49 lpl_off10.73180NoNoNoNo67
312x57 7x42 Shared17.671815.7407YesYesNoNo67
321x50 2x50 Shared34.077936.3893NoYesNoYes99
332x50 7x49 Shared40.16738.4803NoYesNoNo99
342x46 3x43 Shared70.399922.9786NoNoNoNo99
352x40 I1x50 Shared37.0427.73NoYesYesYes98
361x60 I1x50 Shared10.311614.9105NoNoYesYes68
372x42 4x42 Shared14.948934.2158YesYesNoYes87
382x42 3x49 Shared21.883641.2146YesYesYesYes89
392x45 3x42 Shared18.363111.9414NoNoNoNo98
402x46 3x42 Shared25.090421.9266NoNoNoNo98
41Lig NT Shared23.590713.8106YesYesYesYes06
42E2 Lig Shared32.471827.7126YesYesYesYes40
433x36 6x48 Shared10.673381.8075NoNoYesYes68
441x46 1x50 lpl_on016.3841NoYesNoYes79
457x45 7x49 lpl_on0100YesYesNoNo99
466x48 7x45 lpl_on3.2918586.924YesYesYesYes89
473x36 Lig lpl_on064.8931NoNoYesYes60
488x50 8x54 lpl_on010.7633NoYesYesYes87
492x40 8x50 lpl_on014.5583NoYesNoYes98
502x37 2x40 lpl_on050.9346NoNoNoYes79
512x37 2x38 lpl_on2.4622453.0777NoNoNoNo77
522x38 3x49 lpl_on5.9455428.3125NoNoYesYes79
532x42 3x46 lpl_on2.6909276.2824YesYesNoNo88
543x46 7x53 lpl_on075.7868NoNoNoYes89
553x43 7x53 lpl_on085.22NoNoNoYes99
563x43 7x49 lpl_on081.7597NoNoNoNo99
572x38 4x42 lpl_on028.2125NoNoNoYes77
58I1x49 I1x50 lpl_on2.5579711.2154NoNoYesYes68
592x46 2x50 lpl_on021.1876NoNoNoYes99
603x36 7x42 lpl_on016.9058NoNoNoNo67
613x40 6x48 lpl_on044.6227NoNoYesYes78
623x40 5x50 lpl_on3.5152143.6489NoNoNoNo78
633x44 5x50 lpl_on041.6754NoYesNoNo78
643x44 3x48 lpl_on038.6498NoYesNoNo76
653x51 5x57 lpl_on1.4996836.5893YesYesNoNo87
663x48 5x57 lpl_on037.6239NoNoNoNo67
673x51 5x61 lpl_on8.5141526.1563YesYesNoNo89
683x54 5x61 lpl_on8.5513725.0304NoNoNoNo89
695x37 E2 lpl_on8.8332310.7068NoNoYesYes34
705x51 6x44 lpl_on5.9508618.6576NoNoYesYes59
715x51 6x45 lpl_on4.4777713.8063NoNoNoNo56
725x62 6x33 lpl_on015.7538NoYesNoNo68
735x65 6x33 lpl_on016.7188NoNoNoNo88
743x54 5x65 lpl_on6.3337623.8567NoNoNoNo88
755x62 5x66 lpl_on1.1008310.8372NoYesNoNo65
766x45 6x49 lpl_on011.3285NoNoNoNo66
776x49 6x50 lpl_on2.9940410.0765NoNoNoNo69
781x59 1x60 lpl_on5.1744310.746NoYesNoNo66
796x44 7x45 lpl_on4.1161513.3194YesYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
LigNTShared11.076710.07191101
2x57Liglpl_off3.87501310
2x60LigShared6.135835.23441110
3x29LigShared13.78759.342021110
3x32Liglpl_off8.1491701010
3x33LigShared7.049179.020161110
6x48Liglpl_off5.0083301210
6x51LigShared4.146673.411030010
6x55LigShared6.515833.984960010
7x35LigShared5.615834.335710010
7x38LigShared16.48339.66560010
NTNTShared71.059260.30691111
E2NTShared84.368366.00191111
3x21NTlpl_off4.5241701021
3x22NTShared6.37754.29230021
E1x50NTShared7.090834.317621111
E1x501NTShared16.48259.691110021
3x25NTShared13.81833.475361121
E3NTShared6.05753.215161121
1x392x61lpl_off4.047500322
2x573x32Shared4.263.073691311
2x577x42Shared13.822513.71581312
2x603x28Shared5.7456.765711111
2x603x29lpl_off3.94501111
2x63E1x52lpl_off8.25500022
3x28E1x50Shared5.4954.469481111
3x28E1x52Shared5.16253.296831112
3x253x28Shared9.166677.309521121
3x253x29Shared9.1083313.04791121
3x25E2Shared30.043317.79581121
3x26E2Shared14.9610.44881121
3x283x29Shared8.1453.89791111
3x29E2Shared7.529.773611111
3x33E2Shared10.51925.236591111
3x335x39Shared4.56257.330081112
3x335x43lpl_off4.047501111
3x365x47lpl_off6.400012
3x366x48Shared14.715.963250011
3x374x53Shared4.072.553330112
3x374x56Shared7.10753.40560112
3x405x47lpl_off5.4900022
4x59E2Shared4.044.115481121
4x595x39lpl_off3.86501122
4x60E2Shared12.172510.37741121
4x605x39Shared16.6916.78931122
5x36E2Shared8.61254.780521121
5x38E2Shared5.1456.515161121
5x39E2Shared18.64259.857781121
5x42E2lpl_off7.517500021
E2E2Shared46.0342.39771111
5x40E2lpl_off8.12501021
6x58E2Shared19.474219.81211121
7x31E2Shared4.995834.041671121
7x34E2Shared4.655836.576941111
5x365x38Shared5.435.189641122
5x395x43Shared9.688333.138611121
5x406x55Shared4.99253.733061021
5x435x47lpl_off5.3501112
5x476x52Shared5.542513.0910222
6x446x48Shared14.783311.72291221
6x447x45Shared7.451673.025751222
6x486x52lpl_off5.832501212
6x487x41Shared9.72252.546191212
6x487x45Shared4.0491711.69011212
6x547x31lpl_off4.15501022
6x587x31Shared7.4653.467861122
E3E3lpl_off8.9283301122
E2LigShared5.9354.174131110
E1x48NTShared12.24254.05251121
6x54E2lpl_off3.907501021
7x34LigShared6.331677.696551110
7x34NTlpl_off5.11501111
1x33NTShared3.67250.871021
3x375x47lpl_off3.672500112
E1LigShared3.426673.1450010
2x643x28lpl_off3.292500011
E1x49NTlpl_off3.2016701021
1x331x35lpl_off2.977501022
1x32NTShared2.768332.980021
1x397x42lpl_off2.7183300322
2x532x57lpl_off2.6700021
5x37E2Shared2.54753.412581121
5x446x55lpl_off2.272500021
1x31NTShared2.2151.84750021
1x36NTlpl_off1.952501021
4x63E2lpl_off1.700021
7x32E2lpl_off1.66500021
2x563x32Shared1.484172.356110021
3x30E2lpl_off1.4500021
1x30NTShared0.731.09750021
3x28Liglpl_on04.184921110
3x36Liglpl_on05.136860010
3x37Liglpl_on03.000710110
1x392x57lpl_on03.224720321
1x397x39lpl_on04.31310322
1x432x57lpl_on03.539840021
2x572x61lpl_on06.396031312
2x577x38lpl_on08.908371311
2x577x39lpl_on03.832861312
2x633x28lpl_on05.91810021
3x406x48lpl_on03.420360021
4x594x60lpl_on03.075711122
5x446x52lpl_on03.15290022
5x476x44lpl_on04.101030222
5x476x48lpl_on07.19960221
E1x50Liglpl_on04.113251110
1x357x35lpl_on05.00810021
5x43Liglpl_on07.840791110
3x367x42lpl_on03.585480012
3x375x43lpl_on03.030111
4x565x42lpl_on02.719330022
3x303x33lpl_on02.658250021
2x64Liglpl_on02.111980010
E1x48E1x49lpl_on01.247781122

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
lpl_off s1p_off
lpa_off
lpl_on s1p_on
lpa_on
Network Difference
Value lpl_off lpl_on
Imin 3.67583 2.98302
Number of Linked Nodes 250 261
Number of Specific Nodes 2 (0.80%) 13  (4.98%)
Number of Shared Nodes 248 (99.20%) 248  (95.02%)
Number of Links 279 290
Number of Specific Links 117 (41.94%) 128  (44.14%)
Number of Shared Links 162 (58.06%) 162  (55.86%)
Number of Hubs 27 33
Number of Specific Hubs 9 (33.33%) 15  (45.45%)
Number of Shared Hubs 18 (66.67%) 18  (54.55%)
Average % Shared Neighbours (Jaccard) 41.86
Average % Shared Neighbours (Otsuka) 50.65
Average % Shared Neighbours (Overlap Coefficient) 59.50
Average % Shared Cliques (k3-6) 58.57
Graphlets Similarity 0.663381
Paths Difference
Value lpl_off lpl_on
Number Of Nodes in MetaPath 45 48
Specific Nodes in MetaPath 20 (44.44%) 23  (47.92%)
Shared Nodes in MetaPath 248 (99.20%) 248  (99.20%)
Number Of Links MetaPath 43 49
Specific Links in MetaPath 30 (69.77%) 36  (73.47%)
Shared Links in MetaPath 162 (58.06%) 162  (58.06%)
Number of Shortest Paths 37019 44209
Length Of Smallest Path 3 3
Average Path Length 12.1135 13.2512
Length of Longest Path 27 32
Minimum Path Strength 0.32875 0.278214
Average Path Strength 6.42967 5.20313
Maximum Path Strength 51.5054 38.1897
Minimum Path Correlation 0.7 0.701984
Average Path Correlation 0.901187 0.907253
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.16667 3.44828
Average % Of Corr. Nodes 43.3128 46.5688
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 37.8451 40.3626
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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