Orange: nodes, hubs and links specific of m4_on network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of m4_off network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner m4_on Avg Int. Strength m4_off Avg Int. Strength m4_on Num Of Links m4_off Num Of Links ConSurf
11x54 m4_on4.496877.72428
22x66 m4_on2.9619.675525
33x37 m4_on5.908129.555429
43x49 m4_on7.7987510.6333439
5E2.F189 m4_on6.65756.4438
65x36 m4_on3.671256.74333437
75x48 m4_on4.7138.25518
85x58 m4_on5.732088.16639
96x40 m4_on3.803135.38667439
10E3.I430 m4_on4.5537510.35436
117x53 m4_on5.73358.80667539
128x53 m4_on2.918127.02333439
131x31 m4_on1.00754.1410
14I1x50 Shared7.834388.366459
152x40 Shared4.76255.118559
162x46 Shared5.1874.855549
172x50 Shared8.203757.3449
182x57 Shared4.8946.06559
192x60 Shared8.389387.53167468
20E1x50 Shared8.027088.38143679
213x28 Shared6.10459.9425547
223x32 Shared7.444389.09449
233x33 Shared7.996512.63549
243x51 Shared8.546.4449
25I2x53 Shared9.21557.642559
26I2x57 Shared9.7579.194559
274x57 Shared9.61959.5175548
284x64 Shared7.57255.5975447
29E2.R178 Shared5.666879.9375445
30E2x52 Shared5.6877.75547
31E2.Q188 Shared5.976257.6925448
325x47 Shared8.3554210.118659
336x30 Shared4.15254.8825449
346x44 Shared5.08258.5625549
356x48 Shared6.804649.17143779
366x51 Shared6.657928.0525649
377x38 Shared8.81910.7383567
387x42 Shared8.098136.475489
397x45 Shared8.338757.23449
408x50 Shared7.351257.44459
418x54 Shared4.626874.66449
42Lig Shared6.2582110.266414110
432x42 m4_off4.715.84833368
442x44 m4_off6.55255.4125248
452x53 m4_off6.43756.235349
46E1x51 m4_off3.419177.116355
473x50 m4_off6.28756.93667369
483x56 m4_off2.181673.355347
49E2x50 m4_off9.02756.9675249
506x54 m4_off3.096254.855247
517x34 m4_off6.064179.525346
527x39 m4_off4.924177.28359
537x49 m4_off8.839177.5475349
548x56 m4_off1.01752.065246
   
Orange: nodes, hubs and links specific of m4_on network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of m4_off network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner m4_on Recurrence m4_off Recurrence m4_on Hub1? m4_off Hub1? m4_on Hub2? m4_off Hub2? ConSurf1 ConSurf2
12x46 3x43 m4_on1000YesYesNoNo99
23x43 7x53 m4_on99.83470NoNoYesNo99
31x60 I1x50 m4_on18.4194.03987NoNoYesYes89
41x60 8x53 m4_on16.47390.127143NoNoYesNo89
53x50 7x53 m4_on41.48940NoYesYesNo99
63x50 5x58 m4_on41.24560NoYesYesNo99
73x47 5x58 m4_on59.28810NoNoYesNo99
83x47 5x57 m4_on56.55190NoNoNoNo98
93x51 5x57 m4_on48.19982.87507YesYesNoNo98
10I2x53 I2x57 m4_on17.86090.303503YesYesYesYes99
115x58 6x40 m4_on43.23680YesNoYesNo99
123x32 Lig m4_on23.40640YesYesYesYes90
132x66 E1x51 m4_on16.26264.37208YesNoNoYes55
14E2x51 Lig m4_on18.95270NoNoYesYes40
15E2.V180 E2x51 m4_on18.25644.58125NoNoNoNo54
163x51 3x55 m4_on10.95828.53498YesYesNoNo99
17E2.F189 E2x52 m4_on13.43430YesNoYesYes87
185x47 5x48 m4_on10.88512.90788YesYesYesNo98
195x58 6x37 m4_on19.6570YesNoNoNo99
205x62 6x37 m4_on18.30790NoNoNoNo89
215x62 6x34 m4_on16.78810NoNoNoNo89
226x30 6x34 m4_on10.64390YesYesNoNo99
237x34 Lig m4_on11.22640NoYesYesYes60
241x32 2x66 m4_on10.48410NoNoYesNo65
252x57 7x42 Shared17.129513.0875YesYesYesYes99
262x53 2x56 Shared25.798514.9947NoYesNoNo99
272x53 7x46 Shared25.782258.2479NoYesNoNo99
282x50 7x46 Shared25.898757.8419YesYesNoNo99
292x46 2x50 Shared26.876730.0632YesYesYesYes99
302x43 7x53 Shared34.494683.0818NoNoYesNo89
312x40 2x43 Shared33.692781.3674YesYesNoNo98
321x57 2x40 Shared10.280917.1971NoNoYesYes99
332x40 I1x50 Shared20.106728.6441YesYesYesYes99
341x56 8x53 Shared11.210119.3339NoNoYesNo99
351x56 8x54 Shared10.196919.7851NoNoYesYes99
363x51 3x52 Shared33.868816.7788YesYesNoNo97
373x52 I2x53 Shared32.405918.124NoNoYesYes79
386x40 7x53 Shared50.031288.0814YesNoYesNo99
393x49 I2x53 Shared10.121121.7825YesNoYesYes99
406x48 Lig Shared64.118389.5497YesYesYesYes90
416x48 7x45 Shared66.819377.1553YesYesYesYes99
427x45 7x49 Shared75.331291.1328YesYesNoYes99
433x28 3x32 Shared32.617259.872YesYesYesYes79
443x28 E1x50 Shared30.6504100YesYesYesYes79
45E1x50 E1x51 Shared21.518221.7948YesYesNoYes95
463x33 E2x52 Shared14.943227.4875YesYesYesYes97
475x47 6x48 Shared11.760136.9822YesYesYesYes99
482x56 3x32 Shared16.511814.7855NoNoYesYes99
493x33 Lig Shared12.599922.0655YesYesYesYes90
502x46 7x49 Shared73.827742.5396YesYesNoYes99
516x51 Lig m4_off1.6823327.4875YesYesYesYes90
526x51 7x38 m4_off1.6687913.9611YesYesYesYes97
536x52 Lig m4_off024.8175NoNoYesYes90
547x42 Lig m4_off048.0477YesYesYesYes90
551x35 1x39 m4_off010.4503NoNoNoNo77
561x39 7x39 m4_off2.1862213.9037NoNoNoYes79
572x60 7x38 m4_off7.6883521.5856YesYesYesYes87
587x39 7x42 m4_off016.6311NoYesYesYes99
591x54 2x44 m4_off8.2545410.1878YesNoNoYes88
601x57 2x44 m4_off9.2704516.1964NoNoNoYes98
616x40 7x49 m4_off096.4277YesNoNoYes99
622x53 7x42 m4_off046.9896NoYesYesYes99
632x50 7x49 m4_off1.5875227.9879YesYesNoYes99
648x53 I1x50 m4_off021.1508YesNoYesYes99
658x50 8x54 m4_off029.3823YesYesYesYes99
662x40 8x50 m4_off2.8228532.4133YesYesYesYes99
671x56 8x57 m4_off035.1366NoNoNoNo90
688x57 CT.Y472 m4_off031.2649NoNoNoNo00
692x42 4x46 m4_off064.5681NoYesNoNo89
702x45 4x46 m4_off2.1103765.6017NoNoNoNo99
712x45 3x42 m4_off6.271568.6531NoNoNoNo99
722x46 3x42 m4_off7.2982469.6538YesYesNoNo99
732x42 3x49 m4_off7.4797527.0815NoYesYesNo89
743x32 7x38 m4_off018.2307YesYesYesYes97
752x60 3x28 m4_off1.1974148.2118YesYesYesYes87
763x29 E2x50 m4_off012.6118NoNoNoYes89
773x29 E2x52 m4_off3.2156713.8135NoNoYesYes87
782x63 E2.Q184 m4_off3.4838763.4361NoNoNoNo85
79E2.R178 E2.V180 m4_off9.7309940.9605YesYesNoNo55
80E2.P181 E2.V180 m4_off049.9754NoNoNoNo35
81E2.P181 E2.Q184 m4_off1.164954.4213NoNoNoNo35
823x26 E2.R178 m4_off3.7249722.8037NoNoYesYes85
833x37 4x57 m4_off0.53910516.4835YesNoYesYes98
843x37 4x53 m4_off5.1580714.8716YesNoNoNo99
855x47 5x51 m4_off1.1296867.4596YesYesNoNo98
865x51 6x45 m4_off056.5171NoNoNoNo88
876x41 6x45 m4_off037.0519NoNoNoNo88
885x54 6x41 m4_off020.2075NoNoNoNo98
893x44 5x54 m4_off014.4738NoNoNoNo89
905x47 6x52 m4_off1.7879924.4894YesYesNoNo99
913x44 5x50 m4_off3.1560711.5946NoNoNoNo89
922x42 3x46 m4_off024.6739NoYesNoNo89
933x46 6x37 m4_off023.3533NoNoNoNo99
943x50 6x37 m4_off022.0039NoYesNoNo99
953x50 6x30 m4_off013.9898NoYesYesYes99
96E2.L190 E2x52 m4_off2.1970616.9674NoNoYesYes57
97E2.F189 E2.L190 m4_off014.0226YesNoNoNo85
984x64 E2.F189 m4_off4.7896410.963YesYesYesNo78
996x51 7x34 m4_off037.3062YesYesNoYes96
1007x34 E3.I430 m4_off8.7259218.3045NoYesYesNo66
1016x57 E3.I430 m4_off2.955617.0946NoNoYesNo76
1026x57 6x60 m4_off014.0596NoNoNoNo76
1035x58 6x41 m4_off4.5620814.3138YesNoNoNo98
1046x45 6x49 m4_off1.6308617.3448NoNoNoNo87
1056x49 6x50 m4_off3.2590114.4738NoNoNoNo79
1066x50 7x40 m4_off1.6308611.5946NoNoNoNo99
1078x56 CT.Y472 m4_off023.4968NoYesNoNo60
1083x26 4x62 m4_off2.8336918.2758NoNoNoNo86
1097x38 Lig m4_off9.4736329.4685YesYesYesYes70
1103x32 7x42 m4_off4.3182629.4685YesYesYesYes99
1112x60 7x42 m4_off031.3633YesYesYesYes89
1122x63 E1x50 m4_off1.0998858.375NoNoYesYes89
1134x57 Lig m4_off5.0524214.2236YesYesYesYes80
1146x44 7x45 m4_off8.3629114.1334YesYesYesYes99
1155x47 6x44 m4_off6.2742113.3705YesYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x33LigShared20.218.5551110
3x36LigShared7.676.82751010
4x57LigShared8.7311.59751110
5x461LigShared5.032.98750010
6x48LigShared13.098.93751110
6x51LigShared12.7311.15251110
6x52Ligm4_off11.400110
7x38LigShared17.977.85751110
7x41LigShared7.094.87251110
7x42Ligm4_off5.9901110
2x532x56Shared7.746.191022
2x537x42m4_off4.8401021
2x563x32Shared10.319.941121
2x567x42Shared7.636.99751121
2x577x39Shared8.144.36251022
2x577x42Shared4.797.781021
2x603x28Shared6.755.3051022
2x607x38Shared17.8717.62251021
2x607x39m4_off4.8201022
2x607x42m4_off5.9601021
3x283x32Shared13.44.18750021
3x327x38m4_off5.7501111
3x327x42Shared6.910.9151111
3x334x57Shared14.4713.86251111
3x33E2x52Shared10.885.65251112
3x337x38Shared4.965.461111
3x366x48m4_off4.9401011
3x374x53Shared8.945.58750112
3x374x57Shared10.178.4750111
4x574x61m4_off4.701112
4x61E2x52Shared4.422.9450022
E2.V180E2x51Shared11.810.48750021
5x475x48Shared8.259.031122
5x476x44Shared4.294.8251122
5x476x48Shared6.016.0151121
5x476x52Shared24.1717.21751121
6x446x48Shared19.047.5151121
6x447x45Shared4.834.22751122
6x476x48m4_off4.8501021
6x477x45Shared7.319.871022
6x487x41Shared11.758.16251111
6x487x45Shared4.529.041112
6x517x34m4_off6.7501111
6x517x38Shared8.946.4551111
6x54E3.I430Shared7.294.00751022
6x547x34m4_off5.8201021
6x587x34Shared7.914.80250021
7x34E3.I430Shared17.628.5151012
7x387x42Shared8.946.71111
7x397x42m4_off6.7501021
6x516x55Shared3.796.6251112
3x414x53m4_off3.0700022
5x44Ligm4_off3.0200010
6x61E3.S428m4_off1.7200021
3x32Ligm4_on04.7351110
3x336x51m4_on06.45251111
3x373x41m4_on05.60750112
3x37Ligm4_on03.96250110
3x406x44m4_on04.58750122
3x406x48m4_on04.290121
4x564x57m4_on05.97750021
4x575x43m4_on08.1851112
6x486x52m4_on03.67251111
6x516x52m4_on05.23251111
6x517x41m4_on04.031111
E2x51Ligm4_on07.9250010
7x34Ligm4_on04.8751010
7x31Ligm4_on02.55750010
5x445x48m4_on02.00250012
E3.S428Ligm4_on00.77250010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
m4_off 5DSG-M4-Tiotropium
m4_on 7TRS-M4-Acetylcholine-Gi1/β1/γ2
7V6A-M4-PubChem 9864275-Gi1/β1/γ2
8E9X-M4-2-Deoxycytidine-chim(NtGi1-Go)/β1/γ2
7TRK-M4-Iperoxo-Gi1/β1/γ2
Network Difference
Value m4_on m4_off
Imin 3.58 4.05
Number of Linked Nodes 277 269
Number of Specific Nodes 16 (5.78%) 8  (2.97%)
Number of Shared Nodes 261 (94.22%) 261  (97.03%)
Number of Links 306 300
Number of Specific Links 121 (39.54%) 115  (38.33%)
Number of Shared Links 185 (60.46%) 185  (61.67%)
Number of Hubs 42 41
Number of Specific Hubs 13 (30.95%) 12  (29.27%)
Number of Shared Hubs 29 (69.05%) 29  (70.73%)
Average % Shared Neighbours (Jaccard) 46.01
Average % Shared Neighbours (Otsuka) 54.17
Average % Shared Neighbours (Overlap Coefficient) 62.48
Average % Shared Cliques (k3-6) 56.88
Graphlets Similarity 0.648413
Paths Difference
Value m4_on m4_off
Number Of Nodes in MetaPath 50 82
Specific Nodes in MetaPath 12 (24.00%) 44  (53.66%)
Shared Nodes in MetaPath 261 (94.22%) 261  (94.22%)
Number Of Links MetaPath 50 91
Specific Links in MetaPath 24 (48.00%) 65  (71.43%)
Shared Links in MetaPath 185 (60.46%) 185  (60.46%)
Number of Shortest Paths 63257 68650
Length Of Smallest Path 3 3
Average Path Length 13.963 14.3112
Length of Longest Path 29 30
Minimum Path Strength 0.38625 1.185
Average Path Strength 6.27289 7.57622
Maximum Path Strength 15.1962 18.5933
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.914977 0.931279
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.7037 4.16667
Average % Of Corr. Nodes 41.0424 49.5704
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 49.0896 48.1099
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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