Orange: nodes, hubs and links specific of nop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nop_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner nop_off Avg Int. Strength nop_on Avg Int. Strength nop_off Num Of Links nop_on Num Of Links ConSurf
11x42 nop_off3.894173.2427
21x47 nop_off3.05253.88667436
32x40 nop_off6.210837.19428
42x41 nop_off3.261333.595526
52x45 nop_off9.755838.81667439
62x57 nop_off4.49756.485427
73x41 nop_off4.120831.26415
83x50 nop_off5.270423.605829
94x49 nop_off4.366671.97333436
104x50 nop_off5.4708312.53439
11E2.E194 nop_off2.85.73333431
125x35 nop_off7.024.56333534
135x461 nop_off5.099175.715426
146x44 nop_off8.279174.15333439
156x49 nop_off3.42.99333436
168x50 nop_off6.551113.65667638
17Lig Shared10.16737.238710230
181x36 Shared3.670835.04444
191x39 Shared4.151334.0125547
202x42 Shared6.292675.06667567
21E1x50 Shared6.6022210.676658
22E1x52 Shared9.907339.816556
233x34 Shared4.8446.1545
245x58 Shared6.831335.328559
256x48 Shared8.878335.5925648
266x52 Shared10.26426.92447
277x42 Shared6.040485.0325746
281x35 nop_on7.2254.4175245
291x53 nop_on3.056672.695149
301x57 nop_on5.343333.0725247
312x50 nop_on6.872226.135349
322x64 nop_on3.455.1575344
333x29 nop_on4.964443.28344
34E2x50 nop_on5.693337.6275349
35E2x52 nop_on3.0552.96244
365x47 nop_on8.934444.3625348
375x51 nop_on1.683332.845246
387x45 nop_on7.543335.295369
397x53 nop_on10.06894.0525349
   
Orange: nodes, hubs and links specific of nop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nop_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner nop_off Recurrence nop_on Recurrence nop_off Hub1? nop_on Hub1? nop_off Hub2? nop_on Hub2? ConSurf1 ConSurf2
11x39 7x42 nop_off21.02030YesYesYesYes76
22x54 7x46 nop_off14.07070NoNoNoNo58
32x53 7x46 nop_off75.64440NoNoNoNo78
42x53 3x35 nop_off76.8920NoNoNoNo78
53x35 3x39 nop_off78.13250NoNoNoNo89
63x39 6x44 nop_off79.36580NoNoYesNo99
76x44 6x48 nop_off1006.16402YesNoYesYes98
86x48 7x42 nop_off60.74070YesYesYesYes86
92x50 7x46 nop_off62.46740NoYesNoNo98
101x60 I1x48 nop_off11.10NoNoNoNo55
11I1x48 I1x50 nop_off12.67656.35403NoNoNoNo57
122x40 I1x50 nop_off14.064.26389YesNoNoNo87
132x40 8x50 nop_off16.9020YesNoYesNo88
147x53 8x50 nop_off33.60030NoYesYesNo98
157x49 7x53 nop_off36.47090NoNoNoYes99
168x47 8x50 nop_off12.2940NoNoYesNo88
173x43 6x44 nop_off52.36840NoNoYesNo89
183x43 6x41 nop_off51.41390NoNoNoNo87
195x54 6x41 nop_off50.6560NoNoNoNo87
203x47 5x54 nop_off48.6292.14335NoNoNoNo98
213x47 5x58 nop_off47.00964.27909NoNoYesYes99
225x58 6x37 nop_off21.88542.07494YesYesNoNo97
233x50 6x37 nop_off12.11170YesNoNoNo97
242x41 4x46 nop_off13.12348.53538YesNoNoNo67
252x45 4x49 nop_off31.19440YesNoYesNo96
263x41 4x49 nop_off45.82992.15095YesNoYesNo56
273x37 3x41 nop_off58.29190NoNoYesNo65
283x37 5x461 nop_off59.37877.63092NoNoYesNo66
295x461 Lig nop_off55.99690YesNoYesYes60
303x38 4x49 nop_off12.97680NoNoYesNo66
313x38 4x50 nop_off11.10362.15095NoNoYesNo69
323x25 E1x50 nop_off19.91560.326822NoNoYesYes98
333x29 E2x50 nop_off20.34821.89253NoYesNoYes49
343x25 E2x50 nop_off19.11497.10648NoNoNoYes99
353x25 E2.A191 nop_off36.29215.60158NoNoNoNo94
363x22 E2.A191 nop_off33.54310NoNoNoNo24
373x22 E2.S190 nop_off28.02353.77746NoNoNoNo23
383x40 3x41 nop_off23.49770NoNoYesNo75
393x51 5x61 nop_off26.53630NoNoNoNo88
403x55 3x56 nop_off17.94594.30949NoNoNoNo76
41E2.Q192 E2.S190 nop_off22.47520NoNoNoNo23
42E2.E194 E2.Q192 nop_off16.89840.00760052YesNoNoNo12
435x46 5x49 nop_off19.95850NoNoNoNo45
445x42 5x46 nop_off16.35510NoNoNoNo34
455x38 5x42 nop_off15.13960NoNoNoNo33
465x35 5x38 nop_off12.65150YesNoNoNo43
473x56 I2x50 nop_off15.42922.15855NoNoNoNo67
48I2x50 I3.S249 nop_off14.16010NoNoNoNo74
496x27 I3.S249 nop_off10.44580NoNoNoNo34
506x40 7x49 nop_off12.80880NoNoNoNo89
516x40 7x52 nop_off11.23230NoNoNoNo88
526x55 Lig nop_off11.59331.93813NoNoYesYes50
536x55 6x58 nop_off10.34570NoNoNoNo54
547x42 Lig nop_off60.89090YesYesYesYes60
553x46 6x37 nop_off18.67160NoNoNoNo97
566x52 Lig Shared17.985246.5608YesYesYesYes70
571x39 2x64 Shared13.130520.7114YesYesNoYes74
581x50 2x50 Shared14.17822.4291NoNoNoYes99
592x50 7x49 Shared49.326114.6766NoYesNoNo99
602x45 4x46 Shared23.236730.7745YesNoNoNo97
612x42 4x46 Shared16.365840.2751YesYesNoNo77
622x42 3x46 Shared18.81154.6857YesYesNoNo79
632x45 4x50 Shared13.620320.8938YesNoYesNo99
64E1x50 E1x52 Shared15.915324.2228YesYesYesYes86
652x63 E1x50 Shared36.924914.7602NoNoYesYes48
662x63 Lig Shared37.961616.3183NoNoYesYes40
673x29 Lig Shared23.701427.0502NoYesYesYes40
683x34 4x50 Shared19.558116.8351YesYesYesNo59
693x40 5x50 Shared22.325142.0689NoNoNoNo78
705x58 5x61 Shared31.022833.8299YesYesNoNo98
713x51 3x55 Shared20.441114.6158NoNoNoNo87
725x49 5x50 Shared21.145438.3294NoNoNoNo58
735x47 6x52 Shared14.978738.9526NoYesYesYes87
745x47 6x49 Shared10.978410.5951NoYesYesNo86
753x36 6x48 Shared45.07297.3854NoNoYesYes78
763x36 Lig Shared45.1435100NoNoYesYes70
771x35 1x39 nop_on7.2891710.5951NoYesYesYes57
781x36 2x64 nop_on9.4448210.8231YesYesNoYes44
791x39 7x38 nop_on034.6508YesYesNoNo75
802x57 7x42 nop_on7.8039517.5724YesNoYesYes76
811x43 2x57 nop_on2.148517.1848NoNoYesNo67
821x43 1x47 nop_on016.5463NoNoYesNo66
831x47 2x54 nop_on6.459812.8069YesNoNoNo65
841x46 2x54 nop_on6.2953610.7091NoNoNoNo75
851x47 2x51 nop_on1.6229917.3976YesNoNoNo67
861x50 2x51 nop_on019.0697NoNoNoNo97
877x34 7x38 nop_on029.3684NoNoNoNo45
886x54 7x34 nop_on030.7441NoNoNoNo54
896x54 6x58 nop_on032.401NoNoNoNo54
906x58 Lig nop_on032.8418NoNoYesYes40
916x48 7x45 nop_on3.3961390.9554YesYesNoYes89
927x45 7x48 nop_on074.105NoYesNoNo96
937x48 7x51 nop_on070.8368NoNoNoNo66
947x51 7x55 nop_on1.6229969.1799NoNoNoNo66
951x53 7x55 nop_on027.4607NoYesNoNo96
961x53 1x57 nop_on021.8743NoYesNoYes97
977x55 8x50 nop_on040.4956NoNoYesNo68
981x57 8x50 nop_on1.5836722.0415NoYesYesNo78
991x57 2x44 nop_on023.9492NoYesNoNo75
1001x58 2x44 nop_on012.138NoNoNoNo35
1011x56 8x50 nop_on018.5301NoNoYesNo78
1021x57 2x43 nop_on016.1359NoYesNoNo78
1031x56 I1x48 nop_on010.5571NoNoNoNo75
1042x46 2x50 nop_on012.7613NoNoNoYes99
1052x46 3x43 nop_on057.4675NoNoNoNo98
1063x43 7x53 nop_on056.0614NoNoNoYes89
1073x46 7x53 nop_on056.3578NoNoNoYes99
1082x39 2x43 nop_on012.1304NoNoNoNo88
1097x45 7x49 nop_on061.6554NoYesNoNo99
1103x34 3x35 nop_on010.6331YesYesNoNo58
1113x32 7x42 nop_on0.55410612.5485NoNoYesYes66
1122x56 3x32 nop_on013.8633NoNoNoNo66
1132x56 2x60 nop_on4.4757415.4899NoNoNoNo65
1143x28 Lig nop_on015.049NoNoYesYes50
1152x59 3x28 nop_on013.3845NoNoNoNo65
116E2x50 Lig nop_on022.6343NoYesYesYes90
117E1x50 E2x50 nop_on0.20734315.9611YesYesNoYes89
1182x59 E1x52 nop_on1.4621211.5604NoNoYesYes66
119E1x51 E1x52 nop_on8.7906220.453NoNoYesYes36
120E1x49 E1x51 nop_on4.4042510.2379NoNoNoNo43
1213x29 E2x52 nop_on2.7204819.3357NoYesNoYes44
1223x33 Lig nop_on2.788420.7646NoNoYesYes40
1233x33 E2x52 nop_on017.5268NoNoNoYes44
1245x461 6x52 nop_on4.7974810.1467YesNoYesYes67
1253x36 3x40 nop_on043.9158NoNoNoNo77
1265x47 5x51 nop_on2.7848338.7322NoYesNoYes86
1275x51 5x55 nop_on1.394242.1525NoYesNoNo64
1285x55 6x41 nop_on040.868NoNoNoNo47
1295x58 6x41 nop_on039.6291YesYesNoNo97
1303x50 5x58 nop_on015.011YesNoYesYes99
1313x50 7x53 nop_on014.8134YesNoNoYes99
1325x49 5x53 nop_on036.4369NoNoNoNo57
1335x53 5x57 nop_on026.7462NoNoNoNo77
1343x51 5x57 nop_on024.7625NoNoNoNo87
1353x54 5x61 nop_on3.7464731.9146NoNoNoNo88
1363x54 5x65 nop_on2.5453130.1893NoNoNoNo88
1375x43 Lig nop_on019.6017NoNoYesYes40
1385x39 5x43 nop_on017.998NoNoNoNo64
1394x63 E2x52 nop_on1.4764233.7691NoNoNoYes54
1404x63 5x39 nop_on016.2651NoNoNoNo56
1414x63 E2.P205 nop_on045.1395NoNoNoNo54
142E2.I204 E2.P205 nop_on6.4276320.3922NoNoNoNo54
1435x35 E2.P205 nop_on7.6752620.3922YesNoNoNo44
1445x31 5x35 nop_on2.5917810.2227NoNoYesNo44
1455x36 E2.I204 nop_on3.8751710.2227NoNoNoNo35
1465x65 I3.L248 nop_on014.7298NoNoNoNo83
1476x30 I3.L248 nop_on012.6701NoNoNoNo63
1485x65 6x33 nop_on014.2586NoNoNoNo87
1496x29 6x33 nop_on2.3415412.442NoNoNoNo57
1506x29 6x32 nop_on010.3671NoNoNoNo58
1512x60 Lig nop_on2.2378716.8883NoNoYesYes50
1526x44 7x45 nop_on1.2512117.2912YesNoNoYes99
1535x51 6x44 nop_on021.9731NoYesYesNo69
1542x46 7x49 nop_on046.0439NoNoNoNo99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x60LigShared12.73679.371110
2x63LigShared7.403335.960110
3x29LigShared8.553335.020110
3x32Lignop_off22.6601010
3x33LigShared13.71678.250110
3x36LigShared11.13679.950110
5x461Lignop_off3.6733301010
6x52LigShared10.874.681110
6x55LigShared6.156679.710010
7x42Lignop_off4.7666701010
1x392x57nop_off4.301022
1x397x42nop_off4.9601021
2x562x60Shared4.723334.250021
2x563x28nop_off6.8733300021
2x577x42Shared8.596678.211021
2x607x42nop_off10.896701111
2x63E1x50Shared8.186678.930112
3x25E1x50Shared4.786675.222122
3x28E1x50nop_off3.2700112
E1x50E2x50Shared6.5314.372121
3x25E2x50Shared7.287.282121
3x29E2x50Shared3.273.270111
3x327x42Shared5.366676.91011
3x334x60Shared10.09332.520112
3x366x48Shared13.57336.980112
3x375x461Shared8.811.320021
E2.Q192E2.S190nop_off8.1800112
E2.E203E2.Q192nop_off5.0966700021
5x446x52Shared5.073337.030021
5x4616x52Shared4.8133310.111011
5x476x52Shared20.35.860021
6x486x51nop_off7.3601121
6x487x41nop_off10.7901122
6x487x42nop_off3.5366701121
6x556x58nop_off3.3466700011
6x58E3.Q291nop_off4.6933300111
E3.P292E3.Q291nop_off7.3733300111
7x387x42Shared4.162.50021
6x587x34nop_off3.1033300112
5x435x461nop_off3.100111
E2.E194E2x51nop_off3.0933300111
3x29E2x52Shared3.073.070112
E2.E194E2.E199nop_off2.9600111
7x317x35nop_off2.6200012
E2.D195E2.E194Shared2.61.30021
E2.E194E2.Q192Shared2.546675.10111
7x31NT.L46nop_off2.4833300012
7x30E3.P292Shared1.871.870021
4x64E2.S190nop_off1.8600022
2x662x67nop_off0.5702321
1x397x38nop_on02.51022
2x537x42nop_on02.520021
2x563x32nop_on011.560021
2x593x28nop_on02.622021
3x28Lignop_on02.620110
3x33E2x52nop_on02.520112
4x60E2x52nop_on03.210122
4x605x39nop_on03.930122
E2.E203E2.S190nop_on08.620022
E2.Q192Lignop_on02.710110
E2.E194Lignop_on010.80110
E2.E199E2x51nop_on02.650111
E2.E199Lignop_on026.10110
E2x50Lignop_on05.592110
E2x51Lignop_on03.120110
5x395x43nop_on06.285021
5x43Lignop_on02.510110
6x51Lignop_on02.620110
6x546x58nop_on07.030021
6x547x34nop_on010.960022
6x58E3.P292nop_on09.470111
6x58Lignop_on07.190110
E3.Q291Lignop_on08.550010
E3.P292Lignop_on03.650110
E3.S293Lignop_on06.010010
7x347x38nop_on02.950022
6x517x41nop_on01.840112
3x294x64nop_on01.760112
7x31Lignop_on01.70010
3x363x40nop_on01.510112
2x67Lignop_on01.50010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
nop_off 4EA3-NOP-PubChem 10296561
5DHG-NOP-C-35
5DHH-NOP-SB-612111
nop_on 8F7X-NOP-Nociceptin-Gi1/β1/γ2
Network Difference
Value nop_off nop_on
Imin 3.17667 2.48
Number of Linked Nodes 270 251
Number of Specific Nodes 24 (8.89%) 5  (1.99%)
Number of Shared Nodes 246 (91.11%) 246  (98.01%)
Number of Links 291 266
Number of Specific Links 149 (51.20%) 124  (46.62%)
Number of Shared Links 142 (48.80%) 142  (53.38%)
Number of Hubs 27 23
Number of Specific Hubs 16 (59.26%) 12  (52.17%)
Number of Shared Hubs 11 (40.74%) 11  (47.83%)
Average % Shared Neighbours (Jaccard) 37.84
Average % Shared Neighbours (Otsuka) 46.50
Average % Shared Neighbours (Overlap Coefficient) 55.92
Average % Shared Cliques (k3-6) 78.41
Graphlets Similarity 0.457506
Paths Difference
Value nop_off nop_on
Number Of Nodes in MetaPath 73 91
Specific Nodes in MetaPath 31 (42.47%) 49  (53.85%)
Shared Nodes in MetaPath 246 (91.11%) 246  (91.11%)
Number Of Links MetaPath 76 99
Specific Links in MetaPath 55 (72.37%) 78  (78.79%)
Shared Links in MetaPath 142 (48.80%) 142  (48.80%)
Number of Shortest Paths 56756 37861
Length Of Smallest Path 3 3
Average Path Length 15.2646 12.622
Length of Longest Path 34 27
Minimum Path Strength 0.638333 1.4
Average Path Strength 6.12225 5.0537
Maximum Path Strength 17.9433 18.21
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.921481 0.92271
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.7037 4.54545
Average % Of Corr. Nodes 46.8626 47.9901
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 34.3763 31.532
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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