Orange: nodes, hubs and links specific of npy1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner npy1_off Avg Int. Strength npy1_on Avg Int. Strength npy1_off Num Of Links npy1_on Num Of Links ConSurf
12x57 npy1_off5.94756.46437
22x61 npy1_off9.306252.42333436
33x30 npy1_off6.918753.96416
43x41 npy1_off6.2613.165527
53x50 npy1_off7.211254.12419
64x61 npy1_off7.736254.96333435
75x36 npy1_off8.07257.92333434
85x39 npy1_off12.04256.28667436
96x36 npy1_off5.41252.655428
106x37 npy1_off4.557511.72418
116x58 npy1_off7.12620.3514
12E3.H290 npy1_off8.260404
137x53 npy1_off9.223753.51439
148x58 npy1_off2.4650405
151x39 Shared10.7724.062557
161x50 Shared4.036255.566459
17E1x50 Shared9.6048.194558
18E1x52 Shared9.913755.658457
193x32 Shared5.891255.5875446
203x49 Shared6.046676.9975648
21E2.F184 Shared3.19753.974451
22E2.F202 Shared7.1583.9625545
235x47 Shared6.7554.8675448
246x48 Shared8.1284.4558
256x54 Shared9.511254.4475445
267x38 Shared9.27.105446
278x50 Shared5.6874.396558
28Lig Shared9.1057716.933613250
29NT.L35 npy1_on4.49755.5243
301x31 npy1_on5.2552.26244
312x46 npy1_on5.71755.8825249
322x50 npy1_on4.761675.266359
332x59 npy1_on7.8953.655346
34E1x49 npy1_on11.5757.1575245
353x37 npy1_on5.57754.075246
363x43 npy1_on5.964.1475148
373x51 npy1_on8.806676.105347
384x50 npy1_on10.10335.785349
394x57 npy1_on5.874.335247
40E2.K195 npy1_on11.3158.035343
415x461 npy1_on5.515.185346
425x58 npy1_on5.243334.74857379
435x64 npy1_on5.733332.575345
446x59 npy1_on13.03256.6625244
457x30 npy1_on10.96755.1975243
467x35 npy1_on6.92253.265244
477x42 npy1_on12.2454.645247
487x52 npy1_on5.163.855348
   
Orange: nodes, hubs and links specific of npy1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner npy1_off Recurrence npy1_on Recurrence npy1_off Hub1? npy1_on Hub1? npy1_off Hub2? npy1_on Hub2? ConSurf1 ConSurf2
11x39 2x61 npy1_off14.93270.735414YesYesYesNo76
21x39 7x38 npy1_off27.82833.21621YesYesYesYes76
37x34 7x38 npy1_off36.64210NoNoYesYes56
46x58 7x30 npy1_off10.13210YesNoNoYes43
56x58 Lig npy1_off13.31981.29106YesNoYesYes40
62x50 3x39 npy1_off52.02951.1832NoYesNoNo99
73x39 6x44 npy1_off54.58220NoNoNoNo99
86x44 6x48 npy1_off1000NoNoYesYes98
93x32 6x48 npy1_off53.57890YesYesYesYes68
103x32 Lig npy1_off54.30286.14479YesYesYesYes60
113x36 6x48 npy1_off48.89519.227NoNoYesYes78
123x36 Lig npy1_off48.90530NoNoYesYes70
131x53 7x53 npy1_off12.90580NoNoYesNo99
142x40 7x53 npy1_off33.83290NoNoYesNo89
151x57 2x40 npy1_off36.70050NoNoNoNo78
161x57 2x44 npy1_off37.64290NoNoNoNo75
171x54 2x44 npy1_off38.58010.00326851NoNoNoNo75
181x54 2x47 npy1_off40.43940NoNoNoNo79
191x53 8x50 npy1_off11.82630NoNoYesYes98
206x36 8x47 npy1_off13.01240YesNoNoNo88
216x36 7x53 npy1_off20.24380YesNoYesNo89
222x39 3x49 npy1_off33.92432.33698NoNoYesYes78
232x39 6x37 npy1_off34.88950NoNoYesNo78
243x46 6x37 npy1_off42.04720NoNoYesNo88
252x42 3x45 npy1_off43.86592.34352NoNoNoNo77
263x45 4x49 npy1_off45.66421.17339NoNoNoNo77
273x41 4x49 npy1_off46.57350YesNoNoNo77
283x41 5x50 npy1_off61.75260YesNoNoNo79
293x40 5x50 npy1_off63.33764.63801NoNoNoNo79
303x40 6x44 npy1_off64.12244.33077NoNoNoNo79
31E1x50 E1x52 npy1_off33.02265.20673YesYesYesYes87
32E1x50 E2x50 npy1_off35.17911.32701YesYesNoNo89
334x65 E2x50 npy1_off41.82370NoNoNoNo59
344x65 E2x52 npy1_off41.29792.86975NoNoNoNo54
35E2x52 Lig npy1_off56.77930NoNoYesYes40
36E1x51 E1x52 npy1_off28.5090NoNoYesYes27
372x67 E2.K195 npy1_off20.81280NoNoNoYes43
38E1x49 E2.K195 npy1_off25.67180.0359536NoYesNoYes53
39E1x49 E1x51 npy1_off26.62431.34009NoYesNoNo52
404x61 Lig npy1_off11.44530YesNoYesYes50
413x41 3x44 npy1_off11.02110YesNoNoNo77
423x49 I2.W148 npy1_off21.0820YesYesNoNo85
433x55 3x56 npy1_off14.88443.53653NoNoNoNo66
443x52 3x56 npy1_off18.03151.1832NoNoNoNo46
453x52 I2.W148 npy1_off20.10410NoNoNoNo45
46E2.F202 E2x52 npy1_off19.97974.10851YesYesNoNo54
472x67 E2.V187 npy1_off18.88490NoNoNoNo42
48E2.V187 NT.F28 npy1_off17.04340NoNoNoNo20
49E2.F184 NT.F28 npy1_off16.1240YesYesNoNo10
50E2.F184 E2x51 npy1_off11.19380YesYesNoNo13
517x34 Lig Shared36.050348.6517NoNoYesYes50
521x50 2x50 Shared50.302374.7835YesYesNoYes99
531x50 2x47 Shared41.361469.2924YesYesNoNo99
542x42 3x46 Shared42.959114.7835NoNoNoNo78
555x36 E2.F202 Shared13.30210.5475YesNoYesYes45
562x50 7x46 npy1_on1.1226884.1608NoYesNoNo98
576x48 7x46 npy1_on084.6576YesYesNoNo88
585x47 6x48 npy1_on096.4765YesYesYesYes88
595x47 6x49 npy1_on2.146398.4965YesYesNoNo86
606x49 6x50 npy1_on099.1175NoNoNoNo69
616x50 7x37 npy1_on2.146399.7124NoNoNoNo96
626x54 7x37 npy1_on0100YesYesNoNo56
636x54 7x34 npy1_on1.4046254.1624YesYesNoNo55
642x64 7x34 npy1_on014.2278NoNoNoNo45
652x64 7x35 npy1_on2.1920213.5185NoNoNoYes44
661x53 2x47 npy1_on068.5766NoNoNoNo99
671x53 1x57 npy1_on067.1254NoNoNoNo97
681x56 8x50 npy1_on1.1125257.0453NoNoYesYes78
691x57 8x50 npy1_on063.3829NoNoYesYes78
701x56 8x54 npy1_on052.8779NoNoNoNo75
712x42 3x49 npy1_on011.4627NoNoYesYes78
723x42 3x46 npy1_on015.8751NoNoNoNo88
732x46 3x42 npy1_on016.9603NoYesNoNo98
742x46 2x50 npy1_on019.5097NoYesNoYes99
753x38 4x50 npy1_on6.5582912.0281NoNoNoYes79
763x38 4x53 npy1_on014.6298NoNoNoNo78
773x37 4x53 npy1_on1.1226815.9209NoYesNoNo68
783x37 5x461 npy1_on2.2428225.9454NoYesNoYes66
795x461 Lig npy1_on028.9394NoYesYesYes60
80E2.F184 Lig npy1_on019.3561YesYesYesYes10
815x36 Lig npy1_on011.5673YesNoYesYes40
825x58 6x40 npy1_on037.5421NoYesNoNo97
836x40 7x52 npy1_on4.4678739.4672NoNoNoYes78
847x51 7x52 npy1_on042.2814NoNoNoYes68
857x51 7x56 npy1_on043.2064NoNoNoNo66
866x36 7x56 npy1_on1.117644.1216YesNoNoNo86
876x32 6x36 npy1_on045.0335NoNoYesNo78
886x32 8x48 npy1_on4.4653347.6548NoNoNoNo75
898x48 8x51 npy1_on1.1226849.4231NoNoNoNo58
907x55 8x51 npy1_on050.2958NoNoNoNo68
917x55 8x54 npy1_on051.162NoNoNoNo65
923x51 5x61 npy1_on3.3578929.7075NoYesNoNo78
935x58 5x61 npy1_on030.7174NoYesNoNo98
943x51 3x55 npy1_on6.6725925.6022NoYesNoNo76
953x55 5x64 npy1_on7.3634721.376NoNoNoYes65
965x65 5x69 npy1_on011.4496NoNoNoNo80
975x64 5x69 npy1_on015.9569NoYesNoNo50
986x54 7x30 npy1_on046.8769YesYesNoYes53
997x30 Lig npy1_on045.9781NoYesYesYes30

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x533x32npy1_off7.16500021
2x582x59Shared5.0552.890021
2x59E1x52Shared11.792.140112
2x593x24npy1_off6.8400112
2x603x28npy1_off7.3100111
2x607x38Shared11.63513.690112
2x63E1x50Shared13.5058.680111
2x647x31npy1_off4.3900021
2x67E2.T188npy1_off4.33500012
E1x49E2.K195Shared18.99517.030122
E1x50E1x52Shared18.0417.045112
3x25E1x50Shared5.8759.145121
E1x50E2x50Shared8.493.925112
3x25E2x50Shared7.283.645122
3x294x61Shared6.52.890021
3x294x65Shared153.160022
3x326x48npy1_off7.1200112
3x32LigShared5.4656.40110
3x334x61npy1_off5.5900021
3x366x48Shared10.573.520012
3x36Lignpy1_off8.6800010
3x375x461Shared7.7954.250021
3x415x461npy1_off6.5700021
4x615x39Shared9.87.220012
4x61Lignpy1_off9.05500010
4x65E2x50npy1_off4.57500022
4x65E2x52Shared4.572.610021
E2.E182E2.T180npy1_off10.58500112
E2.P183E2.V197Shared6.1853.530112
E2.F184E2x51npy1_off4.82500111
E2.V197E2x51npy1_off7.86500021
E2.F202E2x52Shared5.3752.392121
E2x52Lignpy1_off4.85500010
5x36E2.F202Shared8.557.482112
5x39E2.F202npy1_off5.67500022
5x335x36npy1_off8.3402021
5x33E3.H290npy1_off10.71502022
5x36E3.H290npy1_off12.97502112
5x376x60Shared13.679.110022
5x395x43Shared11.144.690021
5x406x59Shared12.28510.121111
5x40LigShared7.3056.471110
5x476x52Shared7.497.490021
6x516x55Shared6.8655.490021
6x52Lignpy1_off10.13500010
6x546x58npy1_off12.32501011
6x547x33Shared6.72.441012
6x547x34Shared9.6457.51011
6x54Lignpy1_off9.37501010
6x55LigShared24.0916.750110
6x58E3.I292npy1_off4.39501012
6x587x30npy1_off9.61501011
6x58LigShared7.98520.31010
6x59LigShared13.788.341110
7x277x30npy1_off12.3200021
7x347x38npy1_off4.52501112
7x34LigShared13.0256.411110
E2.E182NT.N22npy1_off6.57500112
E2.Q201E2x51npy1_off4.100021
2x563x32Shared3.8159.160121
E2.F184NT.F28npy1_off3.7500112
2x67E2.V187npy1_off3.6500011
E2.P183E2.T180npy1_off3.49500112
2x67E2.K195npy1_off3.45500012
E2.V187NT.F28npy1_off3.27500112
6x517x37npy1_off3.1700022
E2.F184E2.L189npy1_off3.04500112
E3.A294Lignpy1_off2.60500010
5x365x37npy1_off2.42502112
4x565x461npy1_off2.16500021
3x21E1x50npy1_off2.1100021
E2.Q185E3.I293npy1_off2.0600022
6x56Lignpy1_off2.0200010
E2.V187NT.E29npy1_off1.42500112
6x576x58npy1_off1.3100021
E2.F184E2.Q185Shared1.173.510112
2x533x36npy1_on03.070021
2x567x38npy1_on02.950122
2x593x28npy1_on07.250111
2x59Lignpy1_on02.340110
2x603x32npy1_on02.830111
2x60Lignpy1_on08.50110
2x63E2x50npy1_on04.030112
2x63Lignpy1_on017.510110
2x647x34npy1_on06.490021
2x67Lignpy1_on013.470010
E1x49E2.F184npy1_on02.260121
E1x50Lignpy1_on02.195110
3x24E1x52npy1_on04.980022
3x283x32npy1_on03.960111
3x28Lignpy1_on03.960110
3x373x41npy1_on03.890022
3x374x56npy1_on04.80022
3x415x46npy1_on02.440022
4x61E2x52npy1_on04.780011
E2.T180E2x51npy1_on02.590021
E2.E182E2.P183npy1_on07.860111
E2.E182E2.N186npy1_on013.150111
E2.E182Lignpy1_on09.450110
E2.P183Lignpy1_on05.020110
E2.F184E2.K195npy1_on03.720112
E2.F184E2.V197npy1_on07.870112
E2.F184Lignpy1_on02.510110
E2.N186Lignpy1_on04.20110
E2.T188E2.V187npy1_on06.350021
E2.V187Lignpy1_on03.530110
E2x51Lignpy1_on011.670110
5x366x59npy1_on05.962111
5x36Lignpy1_on010.332110
5x435x461npy1_on09.320111
5x43Lignpy1_on03.520110
5x446x56npy1_on02.950021
5x465x461npy1_on02.660021
5x461Lignpy1_on04.510110
5x476x48npy1_on02.890022
6x547x30npy1_on02.261011
6x547x37npy1_on05.591012
6x596x60npy1_on02.231112
7x30E3.I293npy1_on02.650112
7x307x31npy1_on05.10111
7x30Lignpy1_on010.780110
7x31Lignpy1_on09.540110
6x526x56npy1_on01.570011
6x57E3.I292npy1_on01.540022
7x27E3.I293npy1_on01.520022
3x21E1x52npy1_on01.510022
E2.L189E2.N186npy1_on01.370021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
npy1_off 5ZBH-Y1-BMS-193885
5ZBQ-Y1-UR-MK-299
npy1_on 8K6M-Y1-Neuropeptide-Y-Gi2/β1/γ1
Network Difference
Value npy1_off npy1_on
Imin 4.235 1.88
Number of Linked Nodes 303 273
Number of Specific Nodes 38 (12.54%) 8  (2.93%)
Number of Shared Nodes 265 (87.46%) 265  (97.07%)
Number of Links 309 299
Number of Specific Links 175 (56.63%) 165  (55.18%)
Number of Shared Links 134 (43.37%) 134  (44.82%)
Number of Hubs 28 34
Number of Specific Hubs 14 (50.00%) 20  (58.82%)
Number of Shared Hubs 14 (50.00%) 14  (41.18%)
Average % Shared Neighbours (Jaccard) 30.72
Average % Shared Neighbours (Otsuka) 38.94
Average % Shared Neighbours (Overlap Coefficient) 46.60
Average % Shared Cliques (k3-6) 77.78
Graphlets Similarity 0.47945
Paths Difference
Value npy1_off npy1_on
Number Of Nodes in MetaPath 55 49
Specific Nodes in MetaPath 37 (67.27%) 31  (63.27%)
Shared Nodes in MetaPath 265 (87.46%) 265  (87.46%)
Number Of Links MetaPath 55 49
Specific Links in MetaPath 50 (90.91%) 44  (89.80%)
Shared Links in MetaPath 134 (43.37%) 134  (43.37%)
Number of Shortest Paths 62074 49091
Length Of Smallest Path 3 3
Average Path Length 17.0752 18.0512
Length of Longest Path 42 49
Minimum Path Strength 0.77 1.27
Average Path Strength 6.73783 4.89513
Maximum Path Strength 18.935 18.525
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.930094 0.940054
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 2.5641 2.77778
Average % Of Corr. Nodes 47.1036 54.3306
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 31.6318 38.9574
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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