Orange: nodes, hubs and links specific of npy2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner npy2_off Avg Int. Strength npy2_on Avg Int. Strength npy2_off Num Of Links npy2_on Num Of Links ConSurf
11x43 npy2_off2.71254.55426
21x60 npy2_off4.1653.76425
3I1x50 npy2_off4.52753.74438
42x56 npy2_off4.45255.65333436
5E1x49 npy2_off2.4058.85425
63x37 npy2_off6.55753.325426
73x52 npy2_off7.523.165424
83x56 npy2_off5.75255.78667437
94x53 npy2_off3.80753.115428
10E2.Y189 npy2_off8.076.73667435
11E2.P208 npy2_off5.73756.405424
125x39 npy2_off7.8056.40333436
135x44 npy2_off3.6851.39425
146x37 npy2_off4.1955.86418
156x44 npy2_off7.013.68439
167x30 npy2_off6.2257.71333434
177x37 npy2_off5.71756.04436
187x47 npy2_off74.785427
19Lig Shared6.5194413.752918310
201x39 Shared6.7157.02457
212x42 Shared4.80254.04467
222x65 Shared5.57753.115444
23E1x50 Shared6.4867.746558
24E1x52 Shared6.2956.068457
253x51 Shared7.87256.116458
264x50 Shared7.1264.57569
274x64 Shared8.99755.872455
284x65 Shared6.9165.3175546
296x30 Shared8.01756.278457
306x48 Shared8.6923.17568
316x52 Shared8.8122.3575547
326x54 Shared8.2584.754554
337x38 Shared9.9957.852455
347x53 Shared6.801673.87429679
358x50 Shared8.098334.19688
362x40 npy2_on8.283334.3925348
372x41 npy2_on9.652.595145
382x46 npy2_on4.813334.708359
392x50 npy2_on6.315.155249
402x57 npy2_on6.384.16277
413x28 npy2_on3.4755.224255
423x32 npy2_on9.756675.8325346
434x46 npy2_on10.34.4075247
44E2.E188 npy2_on5.517.73344
45E2.W207 npy2_on14.714.872355
465x51 npy2_on6.472.635245
475x58 npy2_on6.286673.57889399
485x65 npy2_on3.083332.5675348
495x70 npy2_on02.645040
506x26 npy2_on4.8655.762254
517x52 npy2_on4.3553.7525248
528x54 npy2_on5.975.0175346
   
Orange: nodes, hubs and links specific of npy2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner npy2_off Recurrence npy2_on Recurrence npy2_off Hub1? npy2_on Hub1? npy2_off Hub2? npy2_on Hub2? ConSurf1 ConSurf2
12x60 Lig npy2_off17.67590.936645NoNoYesYes60
23x32 Lig npy2_off11.92947.26087NoYesYesYes60
33x33 Lig npy2_off12.74841.17643NoNoYesYes40
43x37 Lig npy2_off81.85420YesNoYesYes60
51x39 2x60 npy2_off16.1050YesYesNoNo76
67x35 Lig npy2_off11.92940NoNoYesYes30
71x42 7x42 npy2_off12.34560NoNoNoNo77
81x43 2x57 npy2_off55.15571.19891YesNoNoYes67
91x47 1x48 npy2_off48.22770NoNoNoNo64
101x43 1x47 npy2_off49.2750YesNoNoNo66
112x50 7x46 npy2_off10.7680NoYesNoNo99
121x50 2x50 npy2_off14.33278.51973NoNoNoYes99
131x50 7x50 npy2_off15.64854.91177NoNoNoNo99
141x49 7x50 npy2_off48.22773.69413NoNoNoNo89
151x48 1x49 npy2_off48.16062.469NoNoNoNo48
161x50 2x47 npy2_off10.44580NoNoNoNo99
171x53 2x47 npy2_off15.871.3188NoNoNoNo99
181x53 7x50 npy2_off45.26050NoNoNoNo99
197x53 8x50 npy2_off37.47310YesYesYesYes98
201x53 7x53 npy2_off53.04110NoNoYesYes99
211x54 2x47 npy2_off10.44580NoNoNoNo79
221x60 I1x50 npy2_off14.07760YesNoYesNo58
238x50 I1x50 npy2_off23.91922.1393YesYesYesNo88
243x37 4x53 npy2_off75.20810YesNoYesNo68
253x34 4x53 npy2_off37.86927.23465NoNoYesNo58
263x34 4x50 npy2_off37.66110NoNoYesYes59
272x45 4x50 npy2_off71.09967.40324NoNoYesYes99
282x45 4x46 npy2_off69.62940.251021NoNoNoYes97
292x38 2x42 npy2_off24.22139.70739NoNoYesYes67
302x38 4x39 npy2_off12.15090NoNoNoNo61
313x38 4x53 npy2_off37.86928.41482NoNoYesNo78
323x38 4x50 npy2_off37.66111.39373NoNoYesYes79
332x42 3x45 npy2_off39.90337.00985YesYesNoNo77
342x46 3x42 npy2_off10.17729.50508NoYesNoNo98
356x52 Lig npy2_off53.43050YesYesYesYes70
363x43 6x44 npy2_off94.59590NoNoYesNo89
372x56 3x32 npy2_off12.4530.955378YesNoNoYes66
384x65 Lig npy2_off14.01050YesYesYesYes60
39E1x50 Lig npy2_off57.12270YesYesYesYes80
40E1x50 E1x52 npy2_off14.44688.32865YesYesYesYes87
41E1x50 E2.Y189 npy2_off40.25910YesYesYesNo85
42E2.V201 E2.Y189 npy2_off34.20384.68323NoNoYesNo45
43E1x49 E2.V201 npy2_off19.3811.24386YesNoNoNo54
443x33 4x57 npy2_off10.22420NoNoNoNo47
453x37 4x56 npy2_off10.33162.45401YesNoNoNo65
463x37 5x461 npy2_off10.33163.67165YesNoNoNo66
473x43 6x41 npy2_off93.62240NoNoNoNo88
485x54 6x41 npy2_off73.83190NoNoNoNo88
493x44 5x54 npy2_off17.79670NoNoNoNo78
503x45 4x45 npy2_off37.03685.61987NoNoNoNo75
513x47 5x54 npy2_off65.32630.0299727NoNoNoNo98
523x47 5x58 npy2_off35.0431.30756NoNoNoYes99
535x58 6x37 npy2_off47.23421.34128NoYesYesNo98
546x41 6x42 npy2_off20.23360NoNoNoNo84
556x38 6x42 npy2_off17.33350NoNoNoNo64
565x58 6x38 npy2_off16.2930NoYesNoNo96
573x47 5x57 npy2_off60.92910.0561987NoNoNoNo97
584x41 4x45 npy2_off34.28444.23738NoNoNoNo55
594x41 I2.I160 npy2_off31.5324.2711NoNoNoNo55
603x49 I2.I160 npy2_off28.77950NoNoNoNo85
613x49 3x53 npy2_off26.02712.69379NoNoNoNo88
625x56 5x57 npy2_off58.25730NoNoNoNo47
635x56 5x60 npy2_off55.58540.00374658NoNoNoNo44
643x51 5x60 npy2_off52.91352.67881YesYesNoNo84
653x51 3x52 npy2_off12.18450YesYesYesNo84
663x51 5x61 npy2_off31.16270YesYesNoNo88
673x53 6x30 npy2_off23.37540NoNoYesYes87
686x30 I2.E157 npy2_off14.68180YesYesNoNo74
696x26 I2.E157 npy2_off11.72130NoYesNoNo44
704x60 5x39 npy2_off29.32330NoNoYesNo86
714x60 4x64 npy2_off24.79864.40598NoNoYesYes85
72E2.L191 E2.V201 npy2_off12.91622.37159NoNoNoNo34
73E2.L191 E2.S190 npy2_off10.35850NoNoNoNo31
744x64 E2.P208 npy2_off14.80930.0299727YesYesYesNo54
755x61 6x34 npy2_off28.38350NoNoNoNo86
766x34 6x35 npy2_off14.64820NoNoNoNo66
775x62 6x35 npy2_off11.74140NoNoNoNo56
785x65 6x34 npy2_off14.36630NoYesNoNo86
796x36 7x53 npy2_off17.38720NoNoYesYes89
807x34 Lig npy2_off58.44521.98943NoNoYesYes40
816x54 7x34 npy2_off55.51830YesYesNoNo44
826x54 7x37 npy2_off20.17324.00135YesYesYesNo46
836x50 7x37 npy2_off15.25912.64509NoNoYesNo96
846x50 7x40 npy2_off10.22420NoNoNoNo97
856x54 6x58 npy2_off10.02284.0538YesYesNoNo44
866x54 7x30 npy2_off22.48934.10251YesYesYesNo44
876x61 E3.V297 npy2_off10.090NoNoNoNo26
883x46 6x37 npy2_off34.33140NoNoYesNo98
896x33 6x37 npy2_off59.05610NoNoYesNo88
906x33 8x47 npy2_off56.49840NoNoNoNo88
916x36 8x47 npy2_off17.39390NoNoNoNo88
928x47 8x50 npy2_off36.41253.9414NoNoYesYes88
933x36 Lig Shared49.288468.7198NoNoYesYes70
941x39 7x38 Shared19.918118.5943YesYesYesYes75
952x61 2x65 Shared17.689310.8314NoNoYesYes64
961x39 2x61 Shared22.079817.8562YesYesNoNo76
977x38 7x42 Shared66.205712.4049YesYesNoNo57
987x38 Lig Shared76.570911.5395YesYesYesYes50
992x57 7x42 Shared56.659513.8549NoYesNoNo77
1002x42 4x46 Shared68.266612.9107YesYesNoYes77
1013x36 6x48 Shared48.818568.8584NoNoYesYes78
1026x44 6x48 Shared10015.0313YesNoYesYes98
1036x48 6x52 Shared55.538414.9189YesYesYesYes87
1045x39 Lig Shared31.2513.3828YesNoYesYes60
1056x40 7x53 Shared12.661169.4054NoNoYesYes89
1066x40 7x52 Shared10.224298.6587NoNoNoYes88
1072x42 3x46 Shared35.405531.5013YesYesNoNo79
1082x46 7x53 npy2_on030.3735NoYesYesYes99
1096x43 7x52 npy2_on099.5579NoNoNoYes68
1106x43 6x47 npy2_on5.13561100NoNoNoNo68
1116x47 7x45 npy2_on095.6427NoNoNoNo89
1126x48 7x45 npy2_on2.1817995.8113YesYesNoNo89
1131x52 8x54 npy2_on4.115210.3368NoNoNoYes76
1148x50 8x54 npy2_on8.183414.0085YesYesNoYes86
1152x43 8x50 npy2_on0.92642333.6106NoNoYesYes88
1162x43 7x53 npy2_on1.0875434.6072NoNoYesYes89
1174x46 4x50 npy2_on010.2207NoYesYesYes79
1183x46 7x53 npy2_on028.4515NoNoYesYes99
1192x46 3x39 npy2_on6.4983910.3743NoYesNoNo99
1202x63 E1x50 npy2_on0.51691716.6273NoNoYesYes58
1212x63 Lig npy2_on6.4312618.3845NoNoYesYes50
122E2x52 Lig npy2_on017.2605NoNoYesYes40
1235x58 6x40 npy2_on028.9611NoYesNoNo98
1245x57 5x58 npy2_on010.5167NoNoNoYes79
1255x58 5x61 npy2_on030.913NoYesNoNo98
1264x64 E2.W207 npy2_on5.0550519.6208YesYesNoYes55
127E2.W207 E2x52 npy2_on013.5476NoYesNoNo54
1285x39 E2.W207 npy2_on012.5585YesNoNoYes65
1296x58 Lig npy2_on010.6178NoNoYesYes40
1305x61 5x65 npy2_on025.0909NoNoNoYes88
1315x65 6x30 npy2_on5.639110.0446NoYesYesYes87
1325x65 6x26 npy2_on012.7122NoYesNoYes84
1336x48 7x42 npy2_on026.2823YesYesNoNo87
1341x39 2x57 npy2_on011.5245YesYesNoYes77
1355x58 7x53 npy2_on012.8957NoYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x60LigShared9.9712.070110
2x63LigShared3.621.261110
E1x50Lignpy2_off4.201110
3x32LigShared11.465.621110
3x33LigShared4.212.890110
3x36LigShared8.253.780110
3x37Lignpy2_off3.2700010
4x61LigShared5.963.551110
4x65Lignpy2_off8.2200010
5x39LigShared3.610.251110
5x40LigShared4.625.270110
5x43Lignpy2_off3.6901010
5x44Lignpy2_off3.4101010
6x52Lignpy2_off11.0701010
6x55LigShared12.289.341110
7x34LigShared8.247.770110
7x38LigShared9.497.611110
1x392x60npy2_off3.7500121
1x397x38Shared8.717.620121
2x532x56Shared3.425.120021
2x563x28npy2_off3.4200112
2x563x32Shared9.169.160111
2x577x42Shared8.487.070122
2x63E1x50Shared8.689.651111
2x642x65npy2_off2.9500012
E1x50E1x52Shared10.4715.121112
3x25E1x50Shared5.225.221121
E1x50E2.Y189npy2_off3.8601112
3x25E2.Y189npy2_off4.0301122
3x25E2x50Shared7.287.281122
3x264x65Shared3.391.130021
3x283x29Shared3.533.530022
3x294x65Shared12.9711.530021
3x327x38npy2_off8.6501111
3x366x48Shared6.132.450112
3x374x53npy2_off4.3300012
3x374x56Shared3.991.330012
3x375x461Shared14.645.320012
4x605x39npy2_off15.300021
4x615x39Shared4.697.031111
4x65E2x50npy2_off4.1800012
4x65E2x52Shared5.825.820011
E2.E188E2x51Shared5.647.060111
E2.E188E2.K206Shared9.459.450112
E2.E193E2.I200npy2_off5.4700011
5x395x43npy2_off7.6301111
5x406x59Shared7.364.420111
5x445x47npy2_off3.5201012
5x446x52Shared6.431.291011
5x476x52Shared9.82.181021
6x486x52Shared10.583.171021
6x516x55npy2_off7.9900021
6x517x34Shared7.312.440021
6x526x55npy2_off6.1801011
6x546x58Shared11.82.626121
6x547x30Shared9.286.196121
6x547x34npy2_off7.506121
6x58E3.V297Shared3.213.210112
7x30E3.V297npy2_off6.3100112
7x267x30npy2_off3.4500021
7x277x30npy2_off5.8600021
7x327x35npy2_off4.4200021
7x387x42Shared13.1310.511112
E2.I194E2.I200npy2_off2.9400111
7x27E3.L298npy2_off2.7700021
E2.E211E2.K212npy2_off2.700012
7x267x29npy2_off2.600022
3x334x57npy2_off1.9500112
7x35Lignpy2_off1.8100010
2x563x31npy2_off1.8100112
E2.A202E2.I192npy2_off1.6200021
E2.E188E2.S190Shared1.444.310112
5x446x56npy2_off1.3801012
E1x49E2.I200npy2_off1.3700021
7x287x29Shared1.354.050112
2x63E2.A202Shared1.3341112
E2.E188Lignpy2_on010.10110
E2.I192Lignpy2_on06.050110
E2x51Lignpy2_on04.290110
E2.E211Lignpy2_on03.140010
E2.E193Lignpy2_on06.750010
LigNT.L40npy2_on09.561101
E2.I194Lignpy2_on09.680110
7x28Lignpy2_on03.710110
E3.L298Lignpy2_on015.90110
E2.I200Lignpy2_on02.940110
7x31Lignpy2_on07.150010
7x30Lignpy2_on012.260110
E2x52Lignpy2_on012.790110
6x58Lignpy2_on05.230110
6x59Lignpy2_on05.960110
2x64Lignpy2_on04.250010
2x56Lignpy2_on02.680110
1x357x35npy2_on05.90021
1x392x57npy2_on03.520122
1x397x35npy2_on04.990121
2x577x38npy2_on02.570121
2x603x32npy2_on04.250111
2x607x38npy2_on010.950111
3x28E1x50npy2_on06.130021
E1x50E2x50npy2_on02.611112
3x254x65npy2_on02.791121
3x283x32npy2_on04.30021
3x334x61npy2_on01.710111
E2.Y189E2x50npy2_on04.031022
E2.I192E2.S190npy2_on04.640112
E2.F198E2.I194npy2_on06.280021
E2.F198E2.I200npy2_on06.280021
E2.W207E2x52npy2_on03.275121
5x39E2.W207npy2_on01.931112
5x376x59npy2_on02.890021
5x435x461npy2_on04.51012
5x436x52npy2_on02.791011
6x487x42npy2_on02.331022
6x54E3.V297npy2_on02.626122
6x557x34npy2_on02.341111
7x30E3.L298npy2_on04.690111
7x267x27npy2_on02.710022
7x297x32npy2_on06.630022
5x445x48npy2_on01.491012
7x27E3.V297npy2_on01.490022
E3.S295Lignpy2_on01.390010
7x28NT.D42npy2_on01.380112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
npy2_off 7DDZ-Y2-JNJ-31020028
npy2_on 7YOO-Y2-Neuropeptide-Y-Gi1/β1/γ2
Network Difference
Value npy2_off npy2_on
Imin 2.95 1.71
Number of Linked Nodes 270 280
Number of Specific Nodes 14 (5.19%) 24  (8.57%)
Number of Shared Nodes 256 (94.81%) 256  (91.43%)
Number of Links 298 332
Number of Specific Links 138 (46.31%) 172  (51.81%)
Number of Shared Links 160 (53.69%) 160  (48.19%)
Number of Hubs 35 34
Number of Specific Hubs 18 (51.43%) 17  (50.00%)
Number of Shared Hubs 17 (48.57%) 17  (50.00%)
Average % Shared Neighbours (Jaccard) 36.18
Average % Shared Neighbours (Otsuka) 45.60
Average % Shared Neighbours (Overlap Coefficient) 54.74
Average % Shared Cliques (k3-6) 76.60
Graphlets Similarity 0.595035
Paths Difference
Value npy2_off npy2_on
Number Of Nodes in MetaPath 102 40
Specific Nodes in MetaPath 72 (70.59%) 10  (25.00%)
Shared Nodes in MetaPath 256 (94.81%) 256  (94.81%)
Number Of Links MetaPath 107 43
Specific Links in MetaPath 92 (85.98%) 28  (65.12%)
Shared Links in MetaPath 160 (53.69%) 160  (53.69%)
Number of Shortest Paths 55205 52931
Length Of Smallest Path 3 3
Average Path Length 12.7589 11.8555
Length of Longest Path 27 25
Minimum Path Strength 1.32 1.19
Average Path Strength 6.1897 4.62692
Maximum Path Strength 19.365 15.6033
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.92526 0.940093
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.16667 6.25
Average % Of Corr. Nodes 51.1476 62.8494
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 38.5273 39.001
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download npy2_off_on.zip<



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