Orange: nodes, hubs and links specific of npy2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner npy2_off Avg Int. Strength npy2_on Avg Int. Strength npy2_off Num Of Links npy2_on Num Of Links ConSurf
11x43 npy2_off2.71254.63426
21x60 npy2_off4.1653.775435
32x56 npy2_off4.45255.14333436
42x65 npy2_off5.57755.22667434
5E1x52 npy2_off6.4766.75667537
63x37 npy2_off6.55754.3225426
73x52 npy2_off7.523.4625424
83x56 npy2_off5.75254.91333437
94x53 npy2_off3.80753.52428
10E2.P208 npy2_off5.73754.9375424
115x44 npy2_off3.6852.0025425
126x37 npy2_off4.1955.275418
136x52 npy2_off8.8122.80667537
147x30 npy2_off6.2258.10167434
157x37 npy2_off5.71756.165436
167x47 npy2_off73.555437
171x39 Shared6.7157.009457
18I1x50 Shared4.52753.79375448
192x42 Shared4.80254.824457
20E1x50 Shared6.4866.878558
213x51 Shared7.87255.599458
224x50 Shared7.1265.96549
234x64 Shared8.99756.64375445
244x65 Shared6.9165.2825546
25E2.Y189 Shared8.075.17625445
265x39 Shared7.8054.6425446
276x30 Shared8.01755.089457
286x44 Shared7.013.5475449
296x48 Shared8.6923.726558
306x54 Shared8.2585.17625544
317x38 Shared9.9958.6725445
327x53 Shared6.801674.3225669
338x50 Shared8.098334.80833698
34Lig Shared6.5194412.677118290
352x38 npy2_on3.943.81346
362x40 npy2_on8.283334.83625348
372x46 npy2_on4.813335.11349
382x50 npy2_on6.315.17249
392x54 npy2_on6.8155.705246
402x57 npy2_on6.384.82167267
413x25 npy2_on5.513.8375349
423x28 npy2_on3.4755.232255
433x32 npy2_on9.756675.3775346
443x38 npy2_on11.0054.92375247
454x46 npy2_on10.34.23247
46E2.E188 npy2_on5.516.49125344
47E2.W207 npy2_on14.714.772355
485x51 npy2_on6.472.59875245
495x58 npy2_on6.286673.77857379
505x65 npy2_on3.083332.39348
515x70 npy2_on02.80375040
526x23 npy2_on02.795040
536x26 npy2_on4.8655.993254
547x52 npy2_on4.3552.43125248
558x54 npy2_on5.974.89625346
   
Orange: nodes, hubs and links specific of npy2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner npy2_off Recurrence npy2_on Recurrence npy2_off Hub1? npy2_on Hub1? npy2_off Hub2? npy2_on Hub2? ConSurf1 ConSurf2
17x35 Lig npy2_off11.93390NoNoYesYes30
22x60 Lig npy2_off17.71440.814788NoNoYesYes60
31x39 2x60 npy2_off16.13610YesYesNoNo76
41x39 2x61 npy2_off22.10315.12604YesYesNoNo76
52x61 2x65 npy2_off17.70784.11085NoNoYesNo64
67x38 7x42 npy2_off66.24277.48602YesYesNoNo57
71x42 7x42 npy2_off12.34680NoNoNoNo77
82x57 7x42 npy2_off56.65296.57367NoYesNoNo77
91x43 2x57 npy2_off55.14121.93545YesNoNoYes67
101x43 1x47 npy2_off49.22750YesNoNoNo66
111x47 1x48 npy2_off48.21521.02574NoNoNoNo64
121x48 1x49 npy2_off48.1623.06666NoNoNoNo48
131x49 7x50 npy2_off48.23524.07921NoNoNoNo89
141x50 7x50 npy2_off15.655.08649NoNoNoNo99
151x50 2x50 npy2_off14.35147.08522NoNoNoYes99
162x50 7x46 npy2_off10.78180NoYesNoNo99
171x50 2x47 npy2_off10.45550NoNoNoNo99
181x53 7x50 npy2_off45.3050NoNoNoNo99
191x53 2x47 npy2_off15.88971.06793NoNoNoNo99
201x53 7x53 npy2_off53.12330NoNoYesYes99
217x53 8x50 npy2_off37.51330YesYesYesYes98
221x54 2x47 npy2_off10.44220NoNoNoNo79
238x50 I1x50 npy2_off23.88796.29153YesYesYesYes88
241x60 I1x50 npy2_off14.05835.0944YesNoYesYes58
253x37 Lig npy2_off83.58420YesNoYesYes60
263x37 4x53 npy2_off77.05110YesNoYesNo68
273x34 4x53 npy2_off38.79867.41747NoNoYesNo58
283x34 4x50 npy2_off38.59220NoNoYesYes59
292x38 4x39 npy2_off12.13375.06012NoYesNoNo61
303x38 4x53 npy2_off38.79868.45639NoYesYesNo78
312x42 3x45 npy2_off42.70784.95992YesYesNoNo77
326x52 Lig npy2_off53.45630YesNoYesYes70
333x32 Lig npy2_off11.95397.77608NoYesYesYes60
342x56 3x32 npy2_off12.45340.912351YesNoNoYes66
354x65 Lig npy2_off14.01840YesYesYesYes60
36E1x50 Lig npy2_off57.16570YesYesYesYes80
37E1x50 E1x52 npy2_off21.90331.39226YesYesYesNo87
38E1x50 E2.Y189 npy2_off33.18460YesYesYesYes85
393x33 Lig npy2_off12.74641.0231NoNoYesYes40
403x33 4x57 npy2_off10.22240NoNoNoNo47
413x37 4x56 npy2_off10.3292.04356YesNoNoNo65
423x37 5x461 npy2_off10.3293.05875YesNoNoNo66
433x43 6x41 npy2_off93.49360NoNoNoNo88
445x54 6x41 npy2_off73.7280NoNoNoNo88
453x44 5x54 npy2_off17.77440NoNoNoNo78
463x45 4x45 npy2_off39.85753.96846NoNoNoNo75
473x47 5x54 npy2_off65.24371.64012NoNoNoNo98
483x47 5x58 npy2_off34.91613.2196NoNoNoYes99
495x58 6x37 npy2_off47.09641.64012NoYesYesNo98
506x41 6x42 npy2_off20.19850NoNoNoNo84
516x38 6x42 npy2_off17.30821.02837NoNoNoNo64
525x58 6x38 npy2_off16.26930NoYesNoNo96
533x47 5x57 npy2_off60.74850.0553739NoNoNoNo97
544x41 4x45 npy2_off37.12042.99546NoNoNoNo55
554x41 I2.I160 npy2_off31.63293.05875NoNoNoNo55
563x49 I2.I160 npy2_off28.88250NoNoNoNo85
573x49 3x53 npy2_off26.13212.04883NoNoNoNo88
585x56 5x57 npy2_off58.0780NoNoNoNo47
595x56 5x60 npy2_off55.40760.00263685NoNoNoNo44
603x51 5x60 npy2_off52.75043.27233YesYesNoNo84
613x51 3x52 npy2_off12.1670YesYesYesNo84
623x51 5x61 npy2_off31.12010YesYesNoNo88
633x53 6x30 npy2_off23.48160NoNoYesYes87
646x30 I2.E157 npy2_off14.66440YesYesNoNo74
656x26 I2.E157 npy2_off11.70750NoYesNoNo44
665x39 Lig npy2_off31.269.09714YesYesYesYes60
674x60 5x39 npy2_off29.32870NoNoYesYes86
684x60 4x64 npy2_off24.80023.73115NoNoYesYes85
69E2.L191 E2.V201 npy2_off12.91290NoNoNoNo34
70E2.L191 E2.S190 npy2_off10.35560NoNoNoNo31
714x64 E2.P208 npy2_off14.81090.00791056YesYesYesNo54
725x61 6x34 npy2_off28.35640NoNoNoNo86
736x34 6x35 npy2_off14.63110NoNoNoNo66
745x62 6x35 npy2_off11.72750NoNoNoNo56
755x65 6x34 npy2_off14.41130NoYesNoNo86
766x40 7x52 npy2_off10.22244.44046NoNoNoYes88
777x34 Lig npy2_off60.71520.930809NoNoYesYes40
786x54 7x34 npy2_off57.8050YesYesNoNo44
796x54 7x37 npy2_off20.17181.38698YesYesYesNo46
806x50 7x37 npy2_off15.25712.0251NoNoYesNo96
816x50 7x40 npy2_off10.22240NoNoNoNo97
826x54 6x58 npy2_off10.00270YesYesNoNo44
836x54 7x30 npy2_off24.92673.27497YesYesYesNo44
846x61 E3.V297 npy2_off10.07590NoNoNoNo26
852x42 3x46 npy2_off35.90170YesYesNoNo79
863x46 6x37 npy2_off34.81620NoNoYesNo98
876x33 6x37 npy2_off59.23020NoNoYesNo88
886x36 7x53 npy2_off17.45470NoNoYesYes89
896x33 8x47 npy2_off56.64620NoNoNoNo88
906x36 8x47 npy2_off17.46140NoNoNoNo88
918x47 8x50 npy2_off36.46783.19323NoNoYesYes88
927x38 Lig Shared76.704831.0648YesYesYesYes50
931x39 7x38 Shared19.918823.6236YesYesYesYes75
942x45 4x50 Shared72.968814.384NoNoYesYes99
952x45 4x46 Shared71.643617.9069NoNoNoYes97
962x42 4x46 Shared70.28518.5766YesYesNoYes77
972x38 2x42 Shared24.187511.7815NoYesYesYes67
983x38 4x50 Shared38.592212.5593NoYesYesYes79
993x36 Lig Shared49.287495.5279NoNoYesYes70
1003x36 6x48 Shared48.814695.6835NoNoYesYes78
1016x44 6x48 Shared10097.4633YesYesYesYes98
1022x46 3x42 Shared10.26933.8836NoYesNoNo98
1036x48 6x52 Shared55.520810.0174YesYesYesNo87
1043x43 6x44 Shared94.5525100NoNoYesYes89
105E2.V201 E2.Y189 Shared26.85816.831NoNoYesYes45
106E1x49 E2.V201 Shared11.794114.0386NoNoNoNo54
1076x40 7x53 Shared12.659841.4909NoNoYesYes89
1081x39 7x35 npy2_on010.1229YesYesNoNo73
1092x46 7x53 npy2_on042.4692NoYesYesYes99
1103x43 7x53 npy2_on099.9789NoNoYesYes89
1112x43 8x50 npy2_on0.92567926.8933NoNoYesYes88
1122x43 7x53 npy2_on1.0855127.6632NoNoYesYes89
1132x45 3x42 npy2_on9.0636733.0767NoNoNoNo98
1142x63 E1x50 npy2_on0.51278619.3624NoNoYesYes58
1152x63 Lig npy2_on6.439820.8311NoNoYesYes50
116E1x49 E1x51 npy2_on011.2409NoNoNoNo53
1173x25 E2.Y189 npy2_on0.62599916.657NoYesYesYes95
1184x65 E2x52 npy2_on2.683811.8368YesYesNoNo64
119E2x52 Lig npy2_on018.2971NoNoYesYes40
1203x50 7x53 npy2_on037.7307NoNoYesYes99
1213x50 5x58 npy2_on037.2877NoNoNoYes99
1225x58 6x40 npy2_on037.7676NoYesNoNo98
1235x57 5x58 npy2_on017.6089NoNoNoYes79
1243x51 5x57 npy2_on016.0769YesYesNoNo87
1255x58 5x61 npy2_on052.4628NoYesNoNo98
1265x65 6x30 npy2_on5.7272220.1113NoYesYesYes87
1275x61 5x65 npy2_on049.5728NoNoNoYes88
1285x65 6x26 npy2_on026.6058NoYesNoYes84
1295x70 6x26 npy2_on014.2258NoYesNoYes04
1306x23 6x27 npy2_on015.8027NoYesNoNo04
1316x23 6x24 npy2_on014.2364NoYesNoNo04

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x392x60npy2_off3.7500021
1x397x38Shared8.717.620021
2x532x56Shared3.425.120021
2x563x28npy2_off3.4200112
2x563x32Shared9.167.630111
2x60LigShared9.9716.150110
2x63E1x50Shared8.6810.131111
2x63LigShared3.620.0751110
2x642x65npy2_off2.9500012
E1x50E1x52Shared10.4712.2151112
3x25E1x50Shared5.223.2651121
E1x50E2.Y189npy2_off3.8601112
E1x50Lignpy2_off4.201110
3x25E2.Y189Shared4.032.0151122
3x25E2x50Shared7.287.281122
3x264x65Shared3.391.130021
3x283x29Shared3.533.530022
3x294x65Shared12.9710.810021
3x327x38npy2_off8.6501111
3x32LigShared11.466.7451110
3x33LigShared4.212.890010
3x366x48Shared6.133.6750112
3x36LigShared8.253.150110
3x374x53npy2_off4.3300012
3x374x56Shared3.992.660012
3x375x461Shared14.645.9850012
3x37Lignpy2_off3.2700010
4x605x39npy2_off15.300021
4x615x39Shared4.695.2751011
4x61Lignpy2_off5.9601010
4x65E2x50npy2_off4.1800012
4x65E2x52Shared5.826.40011
4x65Lignpy2_off8.2200010
E2.E188E2x51Shared5.646.350112
E2.E188E2.K206Shared9.458.10112
E2.E193E2.I200npy2_off5.4700112
5x395x43npy2_off7.6301111
5x39LigShared3.610.251110
5x406x59Shared7.365.890111
5x40LigShared4.624.610110
5x43Lignpy2_off3.6901010
5x445x47npy2_off3.5201012
5x446x52Shared6.431.931011
5x44Lignpy2_off3.4101010
5x476x52npy2_off9.801021
6x486x52Shared10.583.71021
6x516x55npy2_off7.9900021
6x517x34npy2_off7.3100021
6x526x55npy2_off6.1801011
6x52Lignpy2_off11.0701010
6x546x58npy2_off11.806121
6x547x30Shared9.286.196121
6x547x34npy2_off7.506121
6x55LigShared12.288.1751110
6x58E3.V297Shared3.213.210112
7x30E3.V297npy2_off6.3100112
7x267x30npy2_off3.4500111
7x277x30npy2_off5.8600021
7x277x31npy2_off4.2300021
7x327x35npy2_off4.4200021
7x34LigShared8.246.670110
7x387x42Shared13.139.1951112
7x38LigShared9.497.611110
E2.I194E2.I200npy2_off2.9400112
7x27E3.L298npy2_off2.7700021
E2.E211E2.K212npy2_off2.700112
7x267x29npy2_off2.600112
3x334x57npy2_off1.9500012
2x563x31npy2_off1.8100112
7x35Lignpy2_off1.8100010
E2.A202E2.I192npy2_off1.6200021
E2.E188E2.S190Shared1.446.4650112
5x446x56npy2_off1.3801012
7x287x29Shared1.353.3750112
2x63E2.A202Shared1.332.6651112
E2.E188Lignpy2_on05.050110
E2.I192Lignpy2_on04.840110
E2.E193Lignpy2_on03.3750110
LigNT.L40npy2_on07.461101
E2.I194Lignpy2_on010.9750110
7x28Lignpy2_on06.8050110
E3.S295Lignpy2_on02.7850010
E3.L298Lignpy2_on016.460110
7x26Lignpy2_on04.410110
7x31Lignpy2_on06.580110
7x30Lignpy2_on013.4250110
E2x52Lignpy2_on012.210110
6x58Lignpy2_on05.8850110
6x59Lignpy2_on04.170110
2x64Lignpy2_on04.250010
2x56Lignpy2_on02.680110
1x357x35npy2_on02.950021
1x397x35npy2_on03.7450021
2x603x32npy2_on02.8350111
2x607x38npy2_on010.2650111
3x28E1x50npy2_on05.5150021
E1x50E2x50npy2_on03.2651112
3x254x65npy2_on02.791121
3x283x32npy2_on04.30021
E2.I192E2.S190npy2_on03.870112
E2.F198E2.I194npy2_on03.140021
E2.F198E2.I200npy2_on03.140022
E2.W207E2x52npy2_on02.7255121
5x39E2.W207npy2_on02.411112
5x376x59npy2_on04.3350021
5x435x461npy2_on031012
5x436x52npy2_on02.791011
6x54E3.V297npy2_on02.626122
6x557x34npy2_on02.341111
6x58E3.L298npy2_on02.980111
7x30E3.L298npy2_on04.690111
7x297x32npy2_on06.630022
E2.I192E2.I200npy2_on02.9450112
E2.E193E2.E199npy2_on010.150112
5x445x45npy2_on02.0751012
E2.Y189E2x50npy2_on02.0151122
7x26E3.Q296npy2_on01.960112
E2.E211Lignpy2_on01.570110
5x37E2.K212npy2_on01.50022
7x31NT.D42npy2_on01.3850112
7x267x27npy2_on01.3550112
E2.E210E2.E211npy2_on01.270021
7x357x36npy2_on00.7950012
7x31NT.T44npy2_on00.750112
5x395x42npy2_on00.6351112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
npy2_off 7DDZ-Y2-JNJ-31020028
npy2_on 7YOO-Y2-Neuropeptide Y-Gi1/&β;1/&γ;2
7YON-Y2-Peptide YY(3-36)-Gi1/&β;1/&γ;2
Network Difference
Value npy2_off npy2_on
Imin 2.95 2.3
Number of Linked Nodes 272 295
Number of Specific Nodes 5 (1.84%) 28  (9.49%)
Number of Shared Nodes 267 (98.16%) 267  (90.51%)
Number of Links 301 331
Number of Specific Links 144 (47.84%) 174  (52.57%)
Number of Shared Links 157 (52.16%) 157  (47.43%)
Number of Hubs 34 39
Number of Specific Hubs 16 (47.06%) 21  (53.85%)
Number of Shared Hubs 18 (52.94%) 18  (46.15%)
Average % Shared Neighbours (Jaccard) 37.34
Average % Shared Neighbours (Otsuka) 45.81
Average % Shared Neighbours (Overlap Coefficient) 53.83
Average % Shared Cliques (k3-6) 76.25
Graphlets Similarity 0.634139
Paths Difference
Value npy2_off npy2_on
Number Of Nodes in MetaPath 102 42
Specific Nodes in MetaPath 70 (68.63%) 10  (23.81%)
Shared Nodes in MetaPath 267 (98.16%) 267  (98.16%)
Number Of Links MetaPath 107 40
Specific Links in MetaPath 91 (85.05%) 24  (60.00%)
Shared Links in MetaPath 157 (52.16%) 157  (52.16%)
Number of Shortest Paths 56043 70509
Length Of Smallest Path 3 3
Average Path Length 12.737 12.3825
Length of Longest Path 27 25
Minimum Path Strength 1.32 0.735
Average Path Strength 6.21964 4.74111
Maximum Path Strength 19.365 15.555
Minimum Path Correlation 0.7 0.71
Average Path Correlation 0.925368 0.940883
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.16667 5.55556
Average % Of Corr. Nodes 51.0833 60.1392
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 38.2479 47.2698
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download npy2_off_on.zip<



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