Orange: nodes, hubs and links specific of nts1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nts1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner nts1_off Avg Int. Strength nts1_on Avg Int. Strength nts1_off Num Of Links nts1_on Num Of Links ConSurf
11x39 nts1_off4.795715.47333737
22x33 nts1_off2.903750404
32x36 nts1_off6.077.13333437
42x51 nts1_off3.68254.27333438
52x62 nts1_off6.516257.32424
63x29 nts1_off8.753757.3435
73x32 nts1_off6.286877.39333837
83x33 nts1_off8.66256.87426
93x37 nts1_off8.5099.38667536
103x39 nts1_off4.126255.62667439
113x49 nts1_off10.85386.425429
123x54 nts1_off4.561253.02428
134x59 nts1_off2.0553.075424
145x43 nts1_off8.596259.26667435
155x461 nts1_off5.096256.97416
165x47 nts1_off8.411256.43333438
176x26 nts1_off4.931251.38415
186x32 nts1_off5.736252.68333438
196x37 nts1_off5.0666.945528
206x44 nts1_off4.869175.92667639
217x41 nts1_off8.4328.32333537
227x42 nts1_off8.1847.85333537
237x45 nts1_off4.185.11667439
247x49 nts1_off3.494178.2629
252x38 Shared7.6114.975546
262x42 Shared8.666.0075548
272x57 Shared6.008755.198457
282x60 Shared7.255837.41333667
292x64 Shared5.558756.73167466
30E1x50 Shared7.947510.36659
31E1x52 Shared7.1944.89557
323x28 Shared10.00135.988456
333x51 Shared7.318756.212458
344x50 Shared7.00254.836459
35E2 Shared9.8916721.04649114
36E2x52 Shared4.38756.5975445
376x48 Shared5.969387.238858
386x51 Shared7.888337.612655
396x52 Shared11.32637.5875447
406x54 Shared10.5157.89575
416x55 Shared6.2849.6625546
42E3 Shared6.196259.56333463
437x30 Shared6.3348.31544
447x34 Shared11.65639.164454
457x38 Shared5.7916.698556
467x53 Shared5.27256.07667469
47Lig Shared7.9235710.251914160
48NT nts1_on3.727513.4362100
491x43 nts1_on4.0454.3975346
50I1 nts1_on4.927510.4071275
512x50 nts1_on6.113336.53349
522x66 nts1_on14.89256.1975247
533x30 nts1_on5.271674.8125345
543x42 nts1_on7.858335.534358
554x64 nts1_on3.84754.7725244
564x65 nts1_on7.816678.1525345
575x50 nts1_on2.798333.93349
586x34 nts1_on2.342.99247
597x37 nts1_on9.2255.8575145
608x50 nts1_on07.23050
   
Orange: nodes, hubs and links specific of nts1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nts1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner nts1_off Recurrence nts1_on Recurrence nts1_off Hub1? nts1_on Hub1? nts1_off Hub2? nts1_on Hub2? ConSurf1 ConSurf2
16x44 7x49 nts1_off20.06790YesNoYesNo99
27x45 7x49 nts1_off14.4570YesNoYesNo99
31x43 2x57 nts1_off10.60236.52377NoYesYesYes67
41x50 2x51 nts1_off11.33080NoNoYesNo98
52x50 6x44 nts1_off21.30680NoYesYesNo99
62x46 3x39 nts1_off73.76660NoNoYesNo99
72x46 3x42 nts1_off73.74323.31358NoNoNoYes98
82x45 3x42 nts1_off36.56127.67261NoNoNoYes98
92x45 4x46 nts1_off73.00657.14743NoNoNoNo97
102x42 4x46 nts1_off72.44086.5008YesYesNoNo87
112x42 3x49 nts1_off60.12094.533YesYesYesNo89
122x38 3x49 nts1_off55.61923.94216YesYesYesNo69
132x35 2x38 nts1_off97.63810NoNoYesYes86
142x35 6x29 nts1_off48.44930NoNoNoNo86
152x36 6x29 nts1_off22.06970YesNoNoNo76
162x49 4x50 nts1_off37.89530NoNoYesYes89
172x45 4x50 nts1_off37.11720.116525NoNoYesYes99
183x42 4x49 nts1_off37.23990.677816NoYesNoNo88
193x45 4x49 nts1_off36.82330NoNoNoNo78
202x42 3x45 nts1_off36.4370.674533YesYesNoNo87
212x42 4x42 nts1_off56.92010YesYesNoNo87
222x38 4x42 nts1_off55.87990.672892YesYesNoNo67
232x34 2x38 nts1_off12.22890NoNoYesYes56
242x33 6x29 nts1_off24.48680YesNoNoNo46
252x33 6x32 nts1_off17.16930YesNoYesNo48
262x36 6x32 nts1_off17.19830YesNoYesNo78
272x35 6x30 nts1_off47.97610NoNoNoNo88
282x43 7x53 nts1_off26.81420NoNoYesYes89
292x39 2x43 nts1_off26.07890NoNoNoNo88
302x39 3x46 nts1_off25.72430NoNoNoNo89
312x59 3x28 nts1_off18.69521.94975NoNoYesYes56
322x59 E1x52 nts1_off17.43561.41307NoNoYesYes57
33E2x52 Lig nts1_off12.25790YesYesYesYes50
34E2x51 E2x52 nts1_off11.08660.0787776NoNoYesYes35
353x33 4x57 nts1_off19.15730YesNoNoNo67
363x30 4x57 nts1_off14.91925.63096NoYesNoNo57
373x30 4x62 nts1_off10.66992.8163NoYesNoNo55
383x32 6x51 nts1_off17.18454.77097YesNoYesYes75
393x37 5x461 nts1_off11.56120YesNoYesNo66
403x36 6x48 nts1_off20.66940.390606NoNoYesYes78
413x36 5x461 nts1_off19.96850NoNoYesNo76
423x46 6x37 nts1_off23.13750NoNoYesNo98
433x47 6x37 nts1_off14.27630NoNoYesNo98
443x54 6x30 nts1_off24.65370YesNoNoNo88
453x54 5x68 nts1_off14.83220YesNoNoNo86
466x26 6x30 nts1_off21.65170YesNoNoNo58
476x26 I2x50 nts1_off12.34620YesNoNoNo59
485x44 6x56 nts1_off12.77940.86163NoNoNoNo55
496x56 6x60 nts1_off10.65610NoNoNoNo55
505x47 6x48 nts1_off11.89640YesNoYesYes88
516x28 6x32 nts1_off14.73430NoNoYesNo58
526x32 6x35 nts1_off14.73430YesNoNoNo87
537x31 Lig nts1_off16.16360NoNoYesYes40
547x31 7x35 nts1_off11.48390NoNoNoNo44
556x54 Lig nts1_off23.46312.68829YesYesYesYes50
563x33 5x43 nts1_off17.00935.10249YesNoYesNo65
576x51 6x54 nts1_off25.62632.73424YesYesYesYes55
581x50 2x50 nts1_off19.46361.64941NoNoNoYes99
593x28 3x32 nts1_off23.28650YesYesYesNo67
606x48 6x51 nts1_off78.40210YesYesYesYes85
613x32 7x41 nts1_off14.04030YesNoYesNo77
622x42 3x46 nts1_off10.92930YesYesNoNo89
633x39 6x44 nts1_off11.70880YesNoYesNo99
647x41 7x42 Shared11.685394.8663YesNoYesNo77
656x48 7x41 Shared26.407294.4117YesYesYesNo87
666x44 6x48 Shared20.51911.4113YesNoYesYes98
676x48 7x45 Shared14.397711.28YesYesYesNo89
683x39 6x48 Shared100100YesNoYesYes98
692x49 3x39 Shared38.095310.1164NoNoYesNo89
707x49 7x53 Shared28.362144.2665YesNoYesYes99
716x51 6x55 Shared38.070512.8178YesYesYesYes56
725x43 6x55 Shared10.589920.3361YesNoYesYes56
736x55 Lig Shared23.610710.3625YesYesYesYes60
743x47 5x57 Shared12.533821.6556NoNoNoNo97
755x64 5x68 Shared12.366924.0633NoNoNoNo56
762x57 7x42 Shared10.493412.0612YesYesYesNo77
772x60 7x42 nts1_on3.580195.1896YesYesYesNo77
782x60 2x64 nts1_on2.9247840.9611YesYesYesYes76
792x64 Lig nts1_on032.696YesYesYesYes60
80Lig NT nts1_on013.4382YesYesNoYes00
812x60 7x34 nts1_on035.9965YesYesYesYes74
827x34 Lig nts1_on3.1496631.1516YesYesYesYes40
832x50 3x39 nts1_on089.7507NoYesYesNo99
847x54 8x50 nts1_on022.1546NoNoNoYes70
852x43 7x54 nts1_on030.0094NoNoNoNo87
862x43 3x46 nts1_on031.0909NoNoNoNo89
873x46 7x53 nts1_on032.0658NoNoYesYes99
882x46 7x53 nts1_on047.4126NoNoYesYes99
892x46 2x50 nts1_on044.7441NoNoNoYes99
902x50 7x49 nts1_on044.6111NoYesYesNo99
911x56 8x50 nts1_on014.5673NoNoNoYes70
921x60 I1 nts1_on011.1864NoNoNoYes55
931x60 8x53 nts1_on012.3156NoNoNoNo50
941x56 8x53 nts1_on013.4447NoNoNoNo70
953x30 4x59 nts1_on014.0552NoYesYesNo54
964x59 4x60 nts1_on2.138416.8568YesNoNoNo48
974x60 4x63 nts1_on019.655NoNoNoNo84
984x63 4x64 nts1_on022.45NoNoNoYes44
993x37 5x43 nts1_on0.74361212.7341YesNoYesNo65
1003x43 7x53 nts1_on053.7986NoNoYesYes89
1013x47 5x58 nts1_on022.7257NoNoNoNo99
1025x58 6x41 nts1_on047.6982NoNoNoNo98
1035x54 6x41 nts1_on051.7815NoNoNoNo88
1043x43 5x54 nts1_on052.7941NoNoNoNo88
1053x51 5x57 nts1_on5.4370619.5188YesYesNoNo87
1063x51 5x61 nts1_on019.8175YesYesNoNo88
1075x61 6x37 nts1_on022.8882NoNoYesNo88
1085x58 6x37 nts1_on3.6352923.9615NoNoYesNo98
1093x51 3x55 nts1_on0.91054628.3386YesYesNoNo87
1104x65 Lig nts1_on1.150612.4846NoYesYesYes50
1113x55 5x64 nts1_on026.1328NoNoNoNo75
1125x65 5x68 nts1_on019.6419NoNoNoNo86
1135x65 6x34 nts1_on011.0322NoNoNoYes87
1146x40 7x52 nts1_on010.2608NoNoNoNo88
1156x40 7x53 nts1_on011.4014NoNoYesYes89
116E2 Lig nts1_on015.7687YesYesYesYes40
1173x29 4x65 nts1_on0.42354211.0518YesNoNoYes55
1184x64 4x65 nts1_on018.1172NoYesNoYes45

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x602x64Shared5.3354.661121
2x603x28Shared6.8454.491122
2x607x38Shared8.6259.21122
2x642x65nts1_off5.02501112
2x647x34Shared8.2512.381111
2x647x38nts1_off3.62501112
2x67E1nts1_off7.80500021
3x25E1x50Shared4.579.141122
E1x50E2nts1_off4.55501121
3x223x26Shared10.3714.291122
3x22E2Shared8.7858.551121
3x25E2nts1_off3.54501121
3x283x29Shared13.4055.961121
3x294x61nts1_off2.99501112
3x294x65Shared12.57510.781111
3x29Lignts1_off6.0401110
4x614x64nts1_off4.5200022
4x65E2x52Shared5.8710.061111
4x65LigShared5.0054.241110
E2E2Shared22.5769.071111
E2E2x51Shared13.1819.211112
E2x51E2x52Shared5.255.251121
5x36E2x52Shared3.285.31011
E2x52Lignts1_off3.1501010
5x35E2Shared8.1653.040021
5x335x37nts1_off5.8200012
5x366x58nts1_off9.74501011
5x36Lignts1_off3.5601010
5x376x59nts1_off4.5800022
5x406x55nts1_off5.0101111
5x406x58nts1_off7.53501111
5x40LigShared4.1455.711110
5x436x55Shared5.42514.461021
5x446x55nts1_off3.8800021
6x516x54Shared7.7158.231121
6x516x55Shared10.8058.231121
6x547x34Shared15.9511.321111
6x547x37Shared9.2257.761112
6x547x38nts1_off9.0401112
6x54LigShared10.6454.861110
6x55LigShared6.38.51110
6x577x33nts1_off4.97500012
6x57Lignts1_off10.4300010
6x58LigShared20.05517.321110
6x617x30nts1_off3.02501111
6x61Lignts1_off5.08501110
7x297x30nts1_off4.12500021
7x30LigShared14.3210.911110
7x317x35nts1_off7.8800112
7x34LigShared17.7756.041110
1x31NTnts1_off5.15500021
3x26E2Shared3.3461121
E3E3Shared7.665.721111
7x26E3Shared5.1253.421121
7x30E3Shared4.344.821111
7x267x30nts1_off5.8601121
7x347x38Shared4.6510.471112
7x27LigShared2.75529.240110
5x34E2nts1_off2.31500021
1x30NTnts1_off2.300021
3x21E1x50nts1_off2.1100022
7x31Lignts1_off1.66500110
1x311x32nts1_off0.76500022
1x317x35nts1_off0.76500022
7x287x31nts1_off0.6300021
NTNTnts1_on010.190111
E2NTnts1_on023.321111
E1NTnts1_on042.560111
LigNTnts1_on05.861101
7x27NTnts1_on05.050111
7x31NTnts1_on016.610111
7x28NTnts1_on08.080021
1x32NTnts1_on07.510121
7x32NTnts1_on04.990121
2x607x34nts1_on05.611121
2x64E1x50nts1_on04.011112
2x643x28nts1_on04.131112
2x643x29nts1_on05.161111
2x64Lignts1_on010.051110
E1Lignts1_on06.780110
E1x49E2nts1_on06.090021
3x21E2nts1_on04.910021
4x644x65nts1_on07.530121
4x64E2nts1_on06.080121
E2Lignts1_on016.171110
6x58E2x52nts1_on05.781111
5x406x59nts1_on08.181112
6x517x38nts1_on05.811122
6x546x55nts1_on07.461111
6x547x30nts1_on011.321111
6x547x33nts1_on04.281112
6x587x30nts1_on06.191111
6x61E3nts1_on017.231111
E3Lignts1_on020.471110
7x277x31nts1_on018.510111
7x337x37nts1_on07.780122
7x377x38nts1_on04.390122
6x577x29nts1_on02.490012
5x33Lignts1_on01.50010
6x576x61nts1_on01.460011

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
nts1_off 6Z4Q-NTS1-SR142948A
6Z4S-NTS1-SR48692
nts1_on 6OS9-NTS1-JMV449-Gi1/&β;1/&γ;2
Network Difference
Value nts1_off nts1_on
Imin 2.92 3.59
Number of Linked Nodes 252 249
Number of Specific Nodes 17 (6.75%) 14  (5.62%)
Number of Shared Nodes 235 (93.25%) 235  (94.38%)
Number of Links 310 288
Number of Specific Links 160 (51.61%) 138  (47.92%)
Number of Shared Links 150 (48.39%) 150  (52.08%)
Number of Hubs 47 36
Number of Specific Hubs 24 (51.06%) 13  (36.11%)
Number of Shared Hubs 23 (48.94%) 23  (63.89%)
Average % Shared Neighbours (Jaccard) 35.74
Average % Shared Neighbours (Otsuka) 44.42
Average % Shared Neighbours (Overlap Coefficient) 52.67
Average % Shared Cliques (k3-6) 77.31
Graphlets Similarity 0.609502
Paths Difference
Value nts1_off nts1_on
Number Of Nodes in MetaPath 69 53
Specific Nodes in MetaPath 44 (63.77%) 28  (52.83%)
Shared Nodes in MetaPath 235 (93.25%) 235  (93.25%)
Number Of Links MetaPath 76 55
Specific Links in MetaPath 63 (82.89%) 42  (76.36%)
Shared Links in MetaPath 150 (48.39%) 150  (48.39%)
Number of Shortest Paths 138376 86258
Length Of Smallest Path 3 3
Average Path Length 15.6186 16.6814
Length of Longest Path 28 32
Minimum Path Strength 0.6675 1.28
Average Path Strength 6.0746 6.61961
Maximum Path Strength 16.2825 29.585
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.91155 0.926527
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 5 4.16667
Average % Of Corr. Nodes 34.4203 46.1985
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 48.9925 39.3245
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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