Orange: nodes, hubs and links specific of nucleotide_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nucleotide_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner nucleotide_off Avg Int. Strength nucleotide_on Avg Int. Strength nucleotide_off Num Of Links nucleotide_on Num Of Links ConSurf
11x55 nucleotide_off00434
22x41 nucleotide_off00414
32x44 nucleotide_off00425
42x64 nucleotide_off00433
53x49 nucleotide_off17.50539
63x50 nucleotide_off42.50539
73x51 nucleotide_off37.50437
84x50 nucleotide_off00429
96x55 nucleotide_off00435
106x58 nucleotide_off00414
116x59 nucleotide_off32.50434
127x45 nucleotide_off00439
138x54 nucleotide_off00427
14NT nucleotide_off500710
151x35 Shared12.593.75455
161x39 Shared7593.75646
172x42 Shared00558
182x57 Shared45100446
193x37 Shared750646
20I2x53 Shared050457
21E2 Shared7510016183
225x39 Shared50100576
235x44 Shared37.575445
245x461 Shared2550458
255x58 Shared50100669
266x30 Shared00446
276x44 Shared5037.5459
286x48 Shared35100558
297x49 Shared2093.75549
307x53 Shared8593.75659
318x50 Shared3543.75569
32Lig Shared10010011110
331x32 nucleotide_on00344
34I1x50 nucleotide_on17.543.75258
352x40 nucleotide_on1075368
362x46 nucleotide_on00149
372x50 nucleotide_on20100359
383x40 nucleotide_on050248
393x43 nucleotide_on031.25148
404x56 nucleotide_on06.25245
414x61 nucleotide_on00245
42E2x52 nucleotide_on00344
435x40 nucleotide_on4043.75245
445x42 nucleotide_on075245
456x43 nucleotide_on00146
46E3 nucleotide_on22.568.75383
477x35 nucleotide_on050353
487x39 nucleotide_on050355
497x42 nucleotide_on4093.75257
508x53 nucleotide_on00246
   
Orange: nodes, hubs and links specific of nucleotide_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nucleotide_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner nucleotide_off Recurrence nucleotide_on Recurrence nucleotide_off Hub1? nucleotide_on Hub1? nucleotide_off Hub2? nucleotide_on Hub2? ConSurf1 ConSurf2
11x35 1x39 nucleotide_off38.35141.09402YesYesYesYes56
21x39 7x39 nucleotide_off17.84620YesYesNoYes65
31x35 2x64 nucleotide_off10.73844.42013YesYesYesNo53
41x42 7x39 nucleotide_off11.45095.18742NoNoNoYes75
51x35 7x35 nucleotide_off53.29997.9555YesYesNoYes53
67x31 7x35 nucleotide_off55.60441.28492NoNoNoYes33
77x31 NT nucleotide_off56.51120NoNoYesNo30
8Lig NT nucleotide_off66.44510YesYesYesNo00
95x39 E2 nucleotide_off51.40111.351YesYesYesYes63
105x39 5x43 nucleotide_off53.43290.201916YesYesNoNo65
113x37 5x43 nucleotide_off53.74310YesYesNoNo65
123x36 3x37 nucleotide_off1000NoNoYesYes66
133x36 6x48 nucleotide_off99.73070NoNoYesYes68
146x55 Lig nucleotide_off43.91498.53188YesNoYesYes50
155x44 6x55 nucleotide_off47.52850YesYesYesNo55
165x44 6x52 nucleotide_off47.27280.0110136YesYesNoNo57
173x37 6x52 nucleotide_off51.40450YesYesNoNo67
187x49 7x53 nucleotide_off89.62640YesYesYesYes99
197x53 8x50 nucleotide_off25.83010YesYesYesYes99
208x50 8x54 nucleotide_off17.43710YesYesYesNo97
211x57 7x53 nucleotide_off21.89950NoNoYesYes89
221x57 2x44 nucleotide_off12.70887.41217NoNoYesNo85
232x43 7x53 nucleotide_off57.57480NoNoYesYes89
242x39 2x43 nucleotide_off56.78390NoNoNoNo88
252x39 3x50 nucleotide_off43.12060NoNoYesNo89
262x45 4x50 nucleotide_off13.50310NoNoYesNo99
273x50 6x30 nucleotide_off43.14790YesNoYesYes96
283x54 6x30 nucleotide_off38.51840NoNoYesYes96
293x54 5x61 nucleotide_off37.5069.55248NoNoNoNo99
303x51 5x61 nucleotide_off36.48670YesNoNoNo79
313x51 5x57 nucleotide_off25.68017.88208YesNoNoNo76
327x54 8x54 nucleotide_off13.89170NoNoYesNo77
337x54 7x55 nucleotide_off12.73610NoNoNoNo76
346x36 7x55 nucleotide_off10.3770NoNoNoNo86
35E2 Lig Shared44.187656.5256YesYesYesYes30
366x48 7x45 Shared95.929641.1469YesYesYesNo89
377x45 7x49 Shared96.42440.5301YesNoYesYes99
382x50 7x49 Shared15.425821.1425NoYesYesYes99
392x39 3x49 Shared12.739560.674NoNoYesNo89
403x37 4x53 Shared31.8319.7915YesYesNoNo68
413x38 4x53 Shared26.392617.3428NoNoNoNo78
423x38 4x50 Shared25.284712.4234NoNoYesNo79
432x45 4x46 Shared12.647497.2686NoNoNoNo98
442x42 4x46 Shared11.457795.8919YesYesNoNo88
453x47 5x57 Shared24.561911.7809NoNoNoNo96
463x47 5x58 Shared20.021113.7193NoNoYesYes99
471x35 7x39 nucleotide_on014.6995YesYesNoYes55
481x35 7x38 nucleotide_on025.838YesYesNoNo55
497x38 Lig nucleotide_on1.4522426.6897NoNoYesYes50
506x48 Lig nucleotide_on097.3788YesYesYesYes80
512x50 7x46 nucleotide_on9.4770620.6322NoYesNoNo99
521x50 2x50 nucleotide_on4.9873913.231NoNoNoYes99
536x44 6x48 nucleotide_on2.3488155.2663YesYesYesYes98
543x43 6x44 nucleotide_on1.2545261.0118NoYesYesYes89
552x46 3x43 nucleotide_on077.4111NoYesNoYes98
562x46 3x42 nucleotide_on0100NoYesNoNo98
572x45 3x42 nucleotide_on0.32385698.638NoNoNoNo98
582x42 3x49 nucleotide_on078.7107YesYesYesNo89
592x37 2x39 nucleotide_on058.8862NoNoNoNo78
602x37 2x40 nucleotide_on1.2545257.2782NoNoNoYes78
612x40 I1x50 nucleotide_on6.6134934.7149NoYesNoYes88
628x53 I1x50 nucleotide_on028.0664NoYesNoYes68
638x52 8x53 nucleotide_on025.3534NoNoNoYes46
648x48 8x52 nucleotide_on1.2545218.9912NoNoNoNo44
658x48 8x51 nucleotide_on017.1959NoNoNoNo48
667x55 8x51 nucleotide_on012.5372NoNoNoNo68
672x46 7x49 nucleotide_on1.2545229.9607NoYesYesYes99
681x57 2x40 nucleotide_on9.0441112.8969NoNoNoYes88
693x49 I2x53 nucleotide_on3.3067419.5602YesNoYesYes97
702x53 7x46 nucleotide_on8.2668613.231NoNoNoNo89
715x42 E2 nucleotide_on034.6305NoYesYesYes53
724x56 5x42 nucleotide_on015.8413NoYesNoYes55
733x37 4x56 nucleotide_on1.2442913.4843YesYesNoYes65
745x42 5x461 nucleotide_on1.5033719.3509NoYesYesYes58
753x37 5x461 nucleotide_on1.8272313.6055YesYesYesYes68
763x43 7x53 nucleotide_on041.3965NoYesYesYes89
775x54 6x44 nucleotide_on038.1512NoNoYesYes89
785x54 5x58 nucleotide_on037.3692NoNoYesYes89
793x52 I2x53 nucleotide_on011.6708NoNoYesYes57
805x58 6x37 nucleotide_on2.1476850.2001YesYesNoNo98
815x61 6x37 nucleotide_on015.129NoNoNoNo98
822x42 4x42 nucleotide_on6.6305316.1717YesYesNoNo87
834x39 4x42 nucleotide_on012.6657NoNoNoNo37
844x38 4x39 nucleotide_on010.8778NoNoNoNo83
856x40 7x53 nucleotide_on017.3685NoNoYesYes89
865x58 6x40 nucleotide_on017.0785YesYesNoNo98
875x62 6x37 nucleotide_on034.5167NoNoNoNo68
885x62 6x30 nucleotide_on031.0731NoNoYesYes66
895x66 6x30 nucleotide_on016.748NoNoYesYes56
905x66 5x70 nucleotide_on1.7590512.9006NoNoNoNo50
915x70 6x26 nucleotide_on010.9512NoNoNoNo03
927x52 7x53 nucleotide_on010.0261NoNoYesYes89
937x34 Lig nucleotide_on1.1454310.1619NoNoYesYes40
943x50 7x53 nucleotide_on017.1959YesNoYesYes99
953x50 5x58 nucleotide_on016.983YesNoYesYes99
967x42 Lig nucleotide_on012.3646NoYesYesYes70
972x46 2x50 nucleotide_on015.7091NoYesNoYes99
983x43 7x49 nucleotide_on011.5019NoYesYesYes89

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x351x39Shared11.165522.65870122
1x392x57Shared6.561256.236253122
1x392x60nucleotide_off4.7392503122
1x397x42Shared9.539510.38563121
2x577x42Shared4.766757.04253121
E1x51E2Shared4.5250.4043750021
3x223x26nucleotide_off4.2617501022
3x22E2Shared14.297518.67371021
3x23E2nucleotide_off3.7517500021
3x25E2Shared4.971254.696251121
3x26E2Shared7.40959.135621121
3x29E2x52nucleotide_off5.43700021
3x323x33nucleotide_off4.9242500011
3x33Lignucleotide_off8.2477500110
3x366x48nucleotide_off5.73400011
3x375x43nucleotide_off5.909506122
4x595x39Shared6.884753.280620122
4x605x39Shared9.9552512.78060122
5x36E2Shared11.78354.936251121
5x39E2Shared6.7168.578751121
E2E2Shared48.542838.871111
E2E2x51Shared9.032257.83751112
E2E2x52Shared6.2042512.471111
E2x52LigShared19.043331.64691110
E2LigShared8.129757.456871110
5x395x42Shared4.2045.483131122
5x395x43Shared4.55253.198751122
5x406x55Shared5.162253.328751111
5x40LigShared4.94153.923131110
6x446x48Shared8.7310.27125121
6x447x45nucleotide_off4.4857505122
6x487x41Shared6.090255.57755112
6x487x45Shared8.45359.110635112
6x517x38nucleotide_off3.99301011
6x51LigShared9.97759.468121010
6x55LigShared11.02927.741110
6x58Lignucleotide_off5.057501010
7x347x38nucleotide_off4.3017501111
7x34LigShared8.506252.058131110
7x38LigShared6.43758.206871110
E3NTnucleotide_off5.497500121
7x24NTnucleotide_off3.882500021
LigNTnucleotide_off6.542501101
7x28NTnucleotide_off7.3500021
7x31NTnucleotide_off12.368700021
3x363x37nucleotide_off6.8112500012
3x406x48Shared6.3312516.88310121
4x635x36nucleotide_off4.2200022
6x587x34nucleotide_off4.3601011
6x62Lignucleotide_off6.072500010
5x446x55nucleotide_off4.0887500121
5x336x62nucleotide_off3.64500021
6x587x30nucleotide_off3.452501012
6x517x37Shared3.32652.998751012
E1x49E2nucleotide_off3.2300021
5x376x55Shared3.189754.559370021
3x21E2Shared3.0153.930121
5x38E2nucleotide_off2.7302500021
1x29NTnucleotide_off2.592500021
7x27NTnucleotide_off2.5787500021
1x322x66nucleotide_off1.86500122
5x30E2nucleotide_off1.687500021
6x587x29nucleotide_off0.1562501012
1x291x32nucleotide_on05.954370022
1x357x38nucleotide_on09.595620121
2x607x42nucleotide_on03.384380021
3x32Lignucleotide_on04.416870010
3x33E2x52nucleotide_on03.273130111
3x335x39nucleotide_on04.689370112
3x335x43nucleotide_on03.515620112
3x36Lignucleotide_on010.96750010
3x406x44nucleotide_on05.023130122
4x594x60nucleotide_on04.046880122
4x59E2nucleotide_on03.48750121
4x60E2nucleotide_on03.345620121
5x42E2nucleotide_on04.6350121
5x365x38nucleotide_on05.26251122
5x395x40nucleotide_on03.965631121
5x405x43nucleotide_on06.046251112
6x48Lignucleotide_on03.413755110
6x517x41nucleotide_on05.344371012
6x58E3nucleotide_on05.080631012
E3E3nucleotide_on03.141880122
7x34E3nucleotide_on03.1451112
7x387x42nucleotide_on04.145631111
7x42Lignucleotide_on06.59753110
3x29E2nucleotide_on02.828750021
7x30E3nucleotide_on02.766880122
2x63E2x52nucleotide_on02.353750021
4x63E2nucleotide_on02.120021
2x66E2nucleotide_on02.071250121
1x32NTnucleotide_on01.370121

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
nucleotide_off adenosine_off
p2y_off
nucleotide_on adenosine_on
Network Difference
Value nucleotide_off nucleotide_on
Imin 3.69 3.12812
Number of Linked Nodes 299 266
Number of Specific Nodes 33 (11.04%) 0  (0.00%)
Number of Shared Nodes 266 (88.96%) 266  (100.00%)
Number of Links 317 300
Number of Specific Links 180 (56.78%) 163  (54.33%)
Number of Shared Links 137 (43.22%) 137  (45.67%)
Number of Hubs 32 36
Number of Specific Hubs 14 (43.75%) 18  (50.00%)
Number of Shared Hubs 18 (56.25%) 18  (50.00%)
Average % Shared Neighbours (Jaccard) 29.14
Average % Shared Neighbours (Otsuka) 38.02
Average % Shared Neighbours (Overlap Coefficient) 46.35
Average % Shared Cliques (k3-6) 53.13
Graphlets Similarity 0.49706
Paths Difference
Value nucleotide_off nucleotide_on
Number Of Nodes in MetaPath 46 59
Specific Nodes in MetaPath 20 (43.48%) 33  (55.93%)
Shared Nodes in MetaPath 266 (88.96%) 266  (88.96%)
Number Of Links MetaPath 46 64
Specific Links in MetaPath 34 (73.91%) 52  (81.25%)
Shared Links in MetaPath 137 (43.22%) 137  (43.22%)
Number of Shortest Paths 51958 58679
Length Of Smallest Path 3 3
Average Path Length 15.3811 13.8767
Length of Longest Path 36 33
Minimum Path Strength 0.426875 0.445312
Average Path Strength 5.84784 5.4213
Maximum Path Strength 17.5975 20.5575
Minimum Path Correlation 0.70025 0.703125
Average Path Correlation 0.904227 0.922394
Maximum Path Correlation 0.98625 0.989375
Minimum % Of Corr. Nodes 3.22581 3.44828
Average % Of Corr. Nodes 36.2992 44.5787
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 46.6888 44.8289
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download nucleotide_off_on.zip<



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