Orange: nodes, hubs and links specific of opsins_on_gp network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of opsins_off network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner opsins_on_gp Avg Int. Strength opsins_off Avg Int. Strength opsins_on_gp Num Of Links opsins_off Num Of Links ConSurf
11x38 opsins_on_gp500414
21x50 opsins_on_gp1000439
32x39 opsins_on_gp500518
42x42 opsins_on_gp1000437
52x45 opsins_on_gp10066.6667439
62x50 opsins_on_gp500419
72x54 opsins_on_gp00426
82x60 opsins_on_gp00427
9E1x50 opsins_on_gp10066.6667638
103x28 opsins_on_gp033.3333435
113x42 opsins_on_gp5033.3333538
12I2x50 opsins_on_gp00428
134x49 opsins_on_gp500527
144x56 opsins_on_gp5033.3333515
154x59 opsins_on_gp00437
164x60 opsins_on_gp00435
17E2x50 opsins_on_gp1000439
18E2x52 opsins_on_gp500524
195x43 opsins_on_gp5033.3333415
205x46 opsins_on_gp00424
215x58 opsins_on_gp1000439
225x62 opsins_on_gp500415
236x30 opsins_on_gp500517
246x40 opsins_on_gp5033.3333528
256x51 opsins_on_gp5033.3333436
266x61 opsins_on_gp00433
277x37 opsins_on_gp00426
287x48 opsins_on_gp500425
297x49 opsins_on_gp033.3333439
307x52 opsins_on_gp500418
317x54 opsins_on_gp500417
32G.HN.43 opsins_on_gp00409
33G.S1.02 opsins_on_gp500505
34G.S1.05 opsins_on_gp500409
35G.S1.06 opsins_on_gp00409
36G.H1.01 opsins_on_gp500409
37G.S2.01 opsins_on_gp1000508
38G.S2.06 opsins_on_gp500408
39G.S3.04 opsins_on_gp1000507
40G.S3.06 opsins_on_gp500606
41G.s3h2.03 opsins_on_gp1000409
42G.H2.06 opsins_on_gp1000609
43G.H2.07 opsins_on_gp500609
44G.H2.10 opsins_on_gp1000507
45G.h2s4.01 opsins_on_gp1000509
46G.S4.02 opsins_on_gp1000408
47G.S4.04 opsins_on_gp1000609
48G.s4h3.01 opsins_on_gp500407
49G.s4h3.03 opsins_on_gp500408
50G.H3.03 opsins_on_gp00404
51G.H3.08 opsins_on_gp500409
52G.H3.09 opsins_on_gp500409
53G.H3.13 opsins_on_gp500505
54G.H3.17 opsins_on_gp1000504
55G.H3.18 opsins_on_gp1000409
56G.S5.02 opsins_on_gp500406
57G.S5.03 opsins_on_gp1000409
58G.S5.04 opsins_on_gp500509
59G.S5.05 opsins_on_gp500609
60G.S5.06 opsins_on_gp1000408
61G.s5hg.01 opsins_on_gp500409
62G.HG.01 opsins_on_gp500405
63G.HG.15 opsins_on_gp500407
64G.hgh4.02 opsins_on_gp500509
65G.hgh4.05 opsins_on_gp500407
66G.H4.05 opsins_on_gp1000404
67G.H4.10 opsins_on_gp500507
68G.H4.12 opsins_on_gp00405
69G.H4.15 opsins_on_gp500508
70G.h4s6.02 opsins_on_gp00507
71G.h4s6.12 opsins_on_gp500604
72G.S6.02 opsins_on_gp1000608
73G.s6h5.01 opsins_on_gp500509
74G.s6h5.05 opsins_on_gp00409
75G.H5.08 opsins_on_gp1000408
76G.H5.13 opsins_on_gp500507
77G.H5.17 opsins_on_gp500506
78G.H5.20 opsins_on_gp500408
79G.H5.26 opsins_on_gp1000405
80b.1x10 opsins_on_gp500401
81b.1x15 opsins_on_gp00407
82b.lh12x2 opsins_on_gp00408
83b.h2x1 opsins_on_gp500405
84b.h2x5 opsins_on_gp00405
85b.lhb1x3 opsins_on_gp1000402
86b.lhb1x6 opsins_on_gp500403
87b.lhb1x11 opsins_on_gp500404
88b.b1x4 opsins_on_gp500407
89b.l1x3 opsins_on_gp1000709
90b.l1x7 opsins_on_gp500409
91b.b2x1 opsins_on_gp500408
92b.b2x5 opsins_on_gp1000707
93b.b3x3 opsins_on_gp500508
94b.l3x1 opsins_on_gp1000409
95b.l3x2 opsins_on_gp500609
96b.b4x3 opsins_on_gp1000607
97b.b4x4 opsins_on_gp1000408
98b.b4x5 opsins_on_gp1000607
99b.b4x6 opsins_on_gp1000709
100b.l4x2 opsins_on_gp00504
101b.b5x2 opsins_on_gp500407
102b.b5x3 opsins_on_gp1000609
103b.b5x5 opsins_on_gp1000405
104b.b5x7 opsins_on_gp1000507
105b.l5x1 opsins_on_gp00408
106b.l5x5 opsins_on_gp1000709
107b.b6x5 opsins_on_gp1000706
108b.l6x5 opsins_on_gp500404
109b.b7x1 opsins_on_gp500404
110b.b7x2 opsins_on_gp500508
111b.l7x2 opsins_on_gp1000509
112b.l7x4 opsins_on_gp500409
113b.b8x3 opsins_on_gp500406
114b.b8x4 opsins_on_gp1000506
115b.l8x3 opsins_on_gp00403
116b.b9x3 opsins_on_gp500406
117b.l9x3 opsins_on_gp500409
118b.l9x6 opsins_on_gp1000708
119b.b10x3 opsins_on_gp500408
120b.b10x5 opsins_on_gp1000409
121b.l10x1 opsins_on_gp00403
122b.b11x2 opsins_on_gp1000607
123b.b11x3 opsins_on_gp500405
124b.b11x4 opsins_on_gp1000609
125b.b11x5 opsins_on_gp500406
126b.b11x6 opsins_on_gp500409
127b.l11x2 opsins_on_gp500509
128b.b12x2 opsins_on_gp00407
129b.b12x3 opsins_on_gp500508
130b.b12x5 opsins_on_gp500406
131b.b12x6 opsins_on_gp1000608
132b.b12x7 opsins_on_gp00409
133b.l12x1 opsins_on_gp500406
134b.b13x7 opsins_on_gp1000607
135b.l13x3 opsins_on_gp1000709
136b.l13x7 opsins_on_gp1000509
137b.b14x3 opsins_on_gp1000505
138b.b14x5 opsins_on_gp00405
139b.b15x1 opsins_on_gp1000609
140b.b15x2 opsins_on_gp500406
141b.b15x3 opsins_on_gp1000509
142b.l15x1 opsins_on_gp1000407
143b.l15x2 opsins_on_gp500409
144b.b16x4 opsins_on_gp1000406
145b.b16x5 opsins_on_gp500405
146b.b16x6 opsins_on_gp1000708
147b.b17x3 opsins_on_gp00405
148b.b17x5 opsins_on_gp1000407
149b.b17x7 opsins_on_gp1000408
150b.l17x3 opsins_on_gp1000809
151b.l17x6 opsins_on_gp500509
152b.l17x7 opsins_on_gp500407
153b.b18x3 opsins_on_gp1000508
154b.b18x5 opsins_on_gp1000605
155b.l18x1 opsins_on_gp1000806
156b.l18x3 opsins_on_gp500505
157b.b19x2 opsins_on_gp1000806
158b.b19x4 opsins_on_gp1000608
159b.b19x6 opsins_on_gp500409
160b.l19x1 opsins_on_gp00409
161b.l19x2 opsins_on_gp1000509
162b.b20x2 opsins_on_gp500406
163b.b20x4 opsins_on_gp500408
164b.b20x6 opsins_on_gp1000606
165b.b20x7 opsins_on_gp00409
166b.l20x2 opsins_on_gp500609
167b.b21x1 opsins_on_gp1000507
168b.b21x2 opsins_on_gp500606
169b.b21x5 opsins_on_gp500504
170b.b21x7 opsins_on_gp1000705
171b.l21x5 opsins_on_gp1000404
172b.b22x5 opsins_on_gp1000607
173b.l22x5 opsins_on_gp1000509
174b.b23x2 opsins_on_gp500406
175b.b23x3 opsins_on_gp00407
176b.b23x6 opsins_on_gp1000507
177b.b24x4 opsins_on_gp1000406
178b.b24x5 opsins_on_gp00405
179b.b24x6 opsins_on_gp1000508
180b.b24x7 opsins_on_gp1000409
181b.l24x2 opsins_on_gp1000506
182b.l24x3 opsins_on_gp1000505
183b.b25x3 opsins_on_gp500405
184b.l25x3 opsins_on_gp1000509
185b.l25x6 opsins_on_gp500408
186b.b26x2 opsins_on_gp500407
187b.b26x3 opsins_on_gp1000506
188b.b26x4 opsins_on_gp500405
189b.b27x1 opsins_on_gp500406
190b.l27x1 opsins_on_gp1000609
191b.l27x2 opsins_on_gp1000409
192b.b28x4 opsins_on_gp1000506
193b.b28x6 opsins_on_gp1000409
194b.b28x7 opsins_on_gp500409
195g.h2x11 opsins_on_gp500409
196g.l2x3 opsins_on_gp00408
197g.l3x4 opsins_on_gp500509
198g.ctx3 opsins_on_gp500404
199g.ctx9 opsins_on_gp500507
200G.HN.11 opsins_on_gp00400
201b.ntx3 opsins_on_gp00400
202NT Shared1001009120
2031x39 Shared5066.6667547
2041x60 Shared066.6667455
205I1x50 Shared5066.6667447
2062x57 Shared5033.3333457
2073x30 Shared5066.6667446
2083x37 Shared5066.6667546
2093x41 Shared100100665
2103x50 Shared100100669
2113x51 Shared10066.6667447
212I2x56 Shared10033.3333447
2134x50 Shared10066.6667649
214E2 Shared10010037290
2155x39 Shared100100656
2165x42 Shared5066.6667444
2175x461 Shared100100666
2186x44 Shared500449
2196x48 Shared10066.6667568
220E3 Shared100100860
2217x53 Shared100100649
2228x50 Shared1000548
223Lig Shared1001007100
2241x30 opsins_off00243
2251x47 opsins_off00346
2261x59 opsins_off033.3333345
2272x38 opsins_off00146
2282x41 opsins_off033.3333245
229E1x51 opsins_off066.6667244
2303x31 opsins_off00254
2314x41 opsins_off033.3333345
232I3 opsins_off066.6667050
2336x31 opsins_off033.3333154
2347x39 opsins_off0100345
2357x42 opsins_off0100347
2368x47 opsins_off00348
2378x49 opsins_off00246
2388x54 opsins_off00346
239CT opsins_off01001120
   
Orange: nodes, hubs and links specific of opsins_on_gp network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of opsins_off network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner opsins_on_gp Recurrence opsins_off Recurrence opsins_on_gp Hub1? opsins_off Hub1? opsins_on_gp Hub2? opsins_off Hub2? ConSurf1 ConSurf2
12x65 E2 opsins_on_gp18.3950NoNoYesYes40
21x39 2x65 opsins_on_gp19.42040YesYesNoNo74
32x54 2x57 opsins_on_gp35.87580YesNoYesYes67
41x50 2x50 opsins_on_gp66.17981.34124YesNoYesNo99
52x50 7x46 opsins_on_gp42.92910YesNoNoNo99
62x54 7x46 opsins_on_gp42.14040YesNoNoNo69
71x50 7x50 opsins_on_gp67.6479.24146YesNoNoNo99
88x50 I1x50 opsins_on_gp91.56890YesYesYesYes87
97x54 8x50 opsins_on_gp68.37720YesNoYesYes78
107x50 7x54 opsins_on_gp68.13110NoNoYesNo97
111x57 I1x50 opsins_on_gp94.70730NoNoYesYes77
12I1x48 I1x51 opsins_on_gp95.33550NoNoNoNo66
131x57 I1x51 opsins_on_gp95.12640NoNoNoNo76
14I1x48 b.l25x4 opsins_on_gp95.50190NoNoNoNo65
152x39 G.H5.23 opsins_on_gp12.02430YesNoNoNo84
163x50 G.H5.23 opsins_on_gp12.22650YesYesNoNo94
177x45 7x49 opsins_on_gp15.69530NoNoYesNo99
186x47 7x45 opsins_on_gp15.45630NoNoNoNo89
196x47 6x48 opsins_on_gp14.8327.3073NoNoYesYes88
202x39 G.H5.22 opsins_on_gp20.83210YesNoNoNo84
21G.s6h5.02 G.s6h5.05 opsins_on_gp45.24740NoNoYesNo79
22G.HG.02 G.s6h5.02 opsins_on_gp45.88330NoNoNoNo97
23G.HG.01 G.HG.02 opsins_on_gp46.51970YesNoNoNo59
24G.HG.01 G.s4h3.01 opsins_on_gp26.12350YesNoYesNo57
25G.S5.06 G.s4h3.01 opsins_on_gp27.32520YesNoYesNo87
26G.S5.04 G.S5.06 opsins_on_gp49.30340YesNoYesNo98
27G.S4.04 G.S5.04 opsins_on_gp55.2740YesNoYesNo99
28G.S1.07 G.S4.04 opsins_on_gp35.00460NoNoYesNo99
29G.S1.05 G.S1.07 opsins_on_gp35.3330YesNoNoNo99
30G.S1.05 G.h2s4.01 opsins_on_gp35.56470YesNoYesNo99
31G.H2.10 G.h2s4.01 opsins_on_gp31.51270YesNoYesNo79
32G.H2.10 b.b2x1 opsins_on_gp52.02040YesNoYesNo78
33b.b2x1 b.l27x1 opsins_on_gp61.43770YesNoYesNo89
34b.b26x1 b.l27x1 opsins_on_gp78.48260NoNoYesNo99
35b.b26x1 b.b26x2 opsins_on_gp78.36850NoNoYesNo97
36b.b26x2 b.b2x3 opsins_on_gp67.02130YesNoNoNo76
37b.b26x4 b.b2x3 opsins_on_gp59.22090YesNoNoNo56
38b.b26x3 b.b26x4 opsins_on_gp67.75710YesNoYesNo65
39b.b26x3 b.b27x3 opsins_on_gp1000YesNoNoNo68
40b.b27x3 b.l25x3 opsins_on_gp97.86510NoNoYesNo89
41b.l25x3 b.l27x2 opsins_on_gp96.2280YesNoYesNo99
42b.l25x4 b.l27x2 opsins_on_gp95.71220NoNoYesNo59
43G.HG.01 G.S6.05 opsins_on_gp24.2360YesNoNoNo55
44G.S5.06 G.S6.05 opsins_on_gp24.8350YesNoNoNo85
45G.H5.10 G.S6.02 opsins_on_gp14.24110NoNoYesNo68
46G.H5.10 G.S5.03 opsins_on_gp14.91610NoNoYesNo69
47G.S5.03 G.S5.05 opsins_on_gp16.93950YesNoYesNo99
48G.S5.05 G.s6h5.01 opsins_on_gp37.32850YesNoYesNo99
49G.s6h5.01 G.s6h5.05 opsins_on_gp39.00850YesNoYesNo99
508x47 8x50 opsins_on_gp21.72190NoYesYesYes88
51b.l1x3 b.l1x7 opsins_on_gp10.50880YesNoYesNo99
52b.b26x2 b.l1x7 opsins_on_gp14.48130YesNoYesNo79
53b.l3x1 b.l5x5 opsins_on_gp18.87520YesNoYesNo99
54G.S4.03 G.S5.05 opsins_on_gp19.28690NoNoYesNo79
55G.H3.18 G.S4.02 opsins_on_gp18.58510YesNoYesNo98
56G.H3.15 G.H3.18 opsins_on_gp18.49820NoNoYesNo89
57G.H3.15 G.H3.17 opsins_on_gp18.5510NoNoYesNo84
58G.H3.17 b.l25x6 opsins_on_gp16.75820YesNoYesNo48
59b.l25x6 b.l27x1 opsins_on_gp25.7280YesNoYesNo89
60G.S1.06 G.S4.03 opsins_on_gp11.17590YesNoNoNo97
61G.H2.04 G.H3.08 opsins_on_gp39.64710NoNoYesNo99
62G.H2.04 G.H2.07 opsins_on_gp40.26470NoNoYesNo99
63G.H2.10 b.l7x2 opsins_on_gp11.40870YesNoYesNo79
64G.HG.15 G.s4h3.03 opsins_on_gp10.81940YesNoYesNo78
65G.H4.11 G.HG.15 opsins_on_gp16.61370NoNoYesNo87
66G.H4.11 G.H4.15 opsins_on_gp19.05410NoNoYesNo88
67G.H3.09 G.H4.15 opsins_on_gp12.74530YesNoYesNo98
68G.s3h2.03 b.l7x4 opsins_on_gp12.63080YesNoYesNo99
69G.H2.07 G.s3h2.03 opsins_on_gp45.83280YesNoYesNo99
70b.b6x1 b.l7x2 opsins_on_gp19.43990NoNoYesNo99
71b.b6x1 b.l9x6 opsins_on_gp19.30540NoNoYesNo98
72G.H2.06 b.l17x6 opsins_on_gp18.31180YesNoYesNo99
73G.H2.06 b.l9x6 opsins_on_gp36.52390YesNoYesNo98
74b.b11x6 b.l11x1 opsins_on_gp24.21770YesNoNoNo99
75b.l11x1 b.l9x6 opsins_on_gp24.42870NoNoYesNo98
76b.l11x2 b.l9x5 opsins_on_gp11.39760YesNoNoNo98
77b.l7x4 b.l9x5 opsins_on_gp11.68720YesNoNoNo98
78G.H2.06 b.l19x1 opsins_on_gp17.89640YesNoYesNo99
79G.S4.02 G.S5.02 opsins_on_gp18.11040YesNoYesNo86
80G.H3.06 G.H4.15 opsins_on_gp10.42230NoNoYesNo68
81G.H3.13 G.S5.02 opsins_on_gp10.47920YesNoYesNo56
82b.b23x3 b.b26x3 opsins_on_gp46.31680YesNoYesNo76
83b.b23x3 b.b24x5 opsins_on_gp46.11060YesNoYesNo75
84b.b24x5 b.b25x4 opsins_on_gp46.92990YesNoNoNo54
85b.b25x4 b.lhb1x6 opsins_on_gp46.89570NoNoYesNo43
86b.l22x5 b.lhb1x6 opsins_on_gp31.12610YesNoYesNo93
87b.l22x5 b.lhb1x3 opsins_on_gp15.25760YesNoYesNo92
88b.h2x5 b.lhb1x3 opsins_on_gp15.3440YesNoYesNo52
89b.h2x1 b.h2x5 opsins_on_gp47.11660YesNoYesNo55
90b.h2x1 g.h3x8 opsins_on_gp40.63260YesNoNoNo54
91b.l18x1 g.h3x8 opsins_on_gp45.52830YesNoNoNo64
92b.l18x1 g.h2x8 opsins_on_gp18.75550YesNoNoNo65
93b.1x5 g.h2x8 opsins_on_gp14.39470NoNoNoNo35
94b.1x4 b.1x5 opsins_on_gp11.67390NoNoNoNo83
95b.l22x5 b.l24x2 opsins_on_gp15.67870YesNoYesNo96
96b.h2x5 b.l24x2 opsins_on_gp15.99490YesNoYesNo56
97b.b24x7 b.lhb1x6 opsins_on_gp15.72780YesNoYesNo93
98b.b24x7 b.l24x3 opsins_on_gp15.44660YesNoYesNo95
99b.h2x5 b.l24x3 opsins_on_gp15.78040YesNoYesNo55
100b.l18x1 b.l18x3 opsins_on_gp22.34850YesNoYesNo65
101b.l18x3 b.l18x4 opsins_on_gp26.69880YesNoNoNo57
102b.b18x5 b.l18x4 opsins_on_gp26.77980YesNoNoNo57
103b.b18x5 b.b19x2 opsins_on_gp22.1170YesNoYesNo56
104b.b17x7 b.b19x2 opsins_on_gp13.73170YesNoYesNo86
105b.b17x7 b.b21x1 opsins_on_gp19.27630YesNoYesNo87
106b.1x18 b.b21x1 opsins_on_gp11.46940NoNoYesNo47
107b.l23x1 b.l25x6 opsins_on_gp37.22690NoNoYesNo68
108b.l21x7 b.l23x1 opsins_on_gp37.03590NoNoNoNo56
109b.l21x7 b.l23x2 opsins_on_gp36.66480NoNoNoNo58
110b.b23x6 b.l23x2 opsins_on_gp35.78970YesNoNoNo78
111b.b23x6 b.l21x9 opsins_on_gp11.24710YesNoNoNo76
112b.b19x5 b.l21x9 opsins_on_gp11.86370NoNoNoNo56
113b.b19x4 b.b19x5 opsins_on_gp11.9030YesNoNoNo85
114b.b19x2 b.b19x4 opsins_on_gp14.4770YesNoYesNo68
115b.b17x7 b.b20x6 opsins_on_gp13.93530YesNoYesNo86
116b.1x19 g.l2x3 opsins_on_gp11.29710NoNoYesNo68
117b.1x15 b.1x19 opsins_on_gp10.03270YesNoNoNo76
118b.l5x3 b.l5x5 opsins_on_gp35.37820NoNoYesNo89
119b.l5x3 b.l7x3 opsins_on_gp34.93550NoNoNoNo89
120b.l7x3 b.l7x5 opsins_on_gp34.49260NoNoNoNo96
121b.b9x3 b.l7x5 opsins_on_gp33.60590YesNoNoNo66
122b.b8x2 b.b9x3 opsins_on_gp16.35410NoNoYesNo86
123b.b8x2 b.b8x4 opsins_on_gp15.90470NoNoYesNo86
124b.b4x3 b.b8x4 opsins_on_gp16.36410YesNoYesNo76
125b.b9x3 b.l8x10 opsins_on_gp16.3540YesNoNoNo64
126b.b8x4 b.l8x10 opsins_on_gp15.90960YesNoNoNo64
127b.b5x7 b.b8x4 opsins_on_gp10.91170YesNoYesNo76
128b.b11x6 b.l9x3 opsins_on_gp22.51350YesNoYesNo99
129b.b11x4 b.l9x3 opsins_on_gp14.70750YesNoYesNo99
130b.b11x2 b.b11x4 opsins_on_gp13.80230YesNoYesNo79
131b.b12x6 b.l9x3 opsins_on_gp18.2480YesNoYesNo89
132b.b11x2 b.b12x6 opsins_on_gp13.95050YesNoYesNo78
133b.b11x2 b.l12x1 opsins_on_gp17.62050YesNoYesNo76
134b.l18x1 g.h2x11 opsins_on_gp20.36290YesNoYesNo69
135b.b17x3 g.h2x11 opsins_on_gp21.80430YesNoYesNo59
136b.b16x6 b.b17x3 opsins_on_gp16.45060YesNoYesNo85
137b.b13x7 b.b16x6 opsins_on_gp10.540YesNoYesNo78
138b.b12x5 b.b13x4 opsins_on_gp10.35360YesNoNoNo64
139b.b12x7 b.b13x4 opsins_on_gp17.09610YesNoNoNo94
140b.l10x4 b.l12x1 opsins_on_gp16.99860NoNoYesNo36
141b.b16x5 b.l14x6 opsins_on_gp11.14580YesNoNoNo53
142b.b19x4 b.l17x3 opsins_on_gp13.3820YesNoYesNo89
143b.l17x5 b.l17x6 opsins_on_gp18.21360NoNoYesNo69
144b.l17x5 b.l19x2 opsins_on_gp35.8060NoNoYesNo69
145b.l17x5 b.l19x1 opsins_on_gp17.85810NoNoYesNo69
146b.b22x5 b.l18x1 opsins_on_gp11.79940YesNoYesNo76
147b.b21x7 b.b24x6 opsins_on_gp23.92550YesNoYesNo58
148b.b23x6 b.b24x6 opsins_on_gp23.35480YesNoYesNo78
1498x49 G.H5.22 opsins_on_gp20.99290NoYesNoNo64
1502x50 7x49 opsins_on_gp19.59960YesNoYesNo99
151G.H3.08 G.S4.04 opsins_on_gp39.30770YesNoYesNo99
152G.s3h2.03 b.l9x6 opsins_on_gp35.93190YesNoYesNo98
153b.b20x5 b.b21x7 opsins_on_gp12.18250NoNoYesNo75
154b.l17x3 b.l19x2 opsins_on_gp33.9810YesNoYesNo99
155b.b20x6 b.l17x3 opsins_on_gp20.01250YesNoYesNo69
156b.l11x2 b.l9x3 opsins_on_gp10.63310YesNoYesNo99
157b.b12x7 b.l10x4 opsins_on_gp16.24940YesNoNoNo93
1581x39 2x57 Shared23.166110.3455YesYesYesYes77
1596x48 Lig Shared11.652515.9967YesYesYesYes80
1608x47 8x49 Shared21.182211.466NoYesNoYes86
1611x39 7x39 opsins_off018.7405YesYesNoYes75
1627x39 E2 opsins_off027.7735NoYesYesYes50
163E2 E3 opsins_off3.9490310.1084YesYesYesYes00
1642x57 7x42 opsins_off8.7199420.9364YesYesNoYes77
1657x39 7x42 opsins_off011.0775NoYesNoYes57
1667x42 Lig opsins_off8.5780614.4919NoYesYesYes70
167E2 Lig opsins_off048.5422YesYesYesYes00
1681x39 2x61 opsins_off0.30985110.1779YesYesNoNo76
1691x43 2x57 opsins_off011.6254NoNoYesYes67
1701x53 7x50 opsins_off015.6001NoNoNoNo99
1711x53 8x50 opsins_off0.54805518.0699NoNoYesYes98
1727x53 8x50 opsins_off029.7076YesYesYesYes98
1732x43 7x53 opsins_off044.1259NoNoYesYes89
1742x43 6x40 opsins_off044.4858NoNoYesNo88
1756x40 7x49 opsins_off045.0133YesNoYesNo89
1762x46 7x49 opsins_off047.0742NoNoYesNo99
1772x46 3x42 opsins_off4.793647.843NoNoYesNo98
1783x42 4x49 opsins_off2.2593396.0499YesNoYesNo87
1792x45 4x49 opsins_off0.00099311196.3116YesNoYesNo97
1802x45 4x50 opsins_off1.2741696.8105YesNoYesYes99
1812x52 4x50 opsins_off1.3042497.9145NoNoYesYes69
1822x52 3x31 opsins_off098.2989NoNoNoYes64
1833x30 3x31 opsins_off099.5093YesYesNoYes64
1843x30 4x61 opsins_off0.00056749299.8283YesYesNoNo65
1853x26 4x61 opsins_off0.000283746100NoNoNoNo75
1863x26 E2 opsins_off0.36489799.9796NoNoYesYes70
1871x56 8x50 opsins_off010.047NoNoYesYes78
1882x40 I1x50 opsins_off010.4396NoNoYesYes87
1892x40 7x53 opsins_off014.1852NoNoYesYes89
1908x49 CT opsins_off011.8462NoYesNoYes60
1917x53 8x47 opsins_off017.9841YesYesNoYes98
1922x38 3x49 opsins_off018.5933NoYesNoNo68
1933x49 3x50 opsins_off027.0374NoNoYesYes89
1943x50 6x37 opsins_off048.4809YesYesNoNo98
1953x46 6x37 opsins_off048.898NoNoNoNo98
1962x42 3x46 opsins_off0.91735149.3601YesNoNoNo79
1972x42 3x42 opsins_off0.41824151.605YesNoYesNo78
1982x37 2x38 opsins_off0.34943315.6655NoNoNoYes76
1992x37 2x40 opsins_off0.69872415.6696NoNoNoNo78
2003x37 Lig opsins_off7.1478421.4598YesYesYesYes60
2013x37 3x41 opsins_off2.2049913.3919YesYesYesYes65
2023x41 5x461 opsins_off0.89677911.0202YesYesYesYes56
2035x42 5x461 opsins_off0.85364913.576YesYesYesYes46
2045x42 E2 opsins_off2.0070815.367YesYesYesYes40
2053x41 5x50 opsins_off1.1413710.2719YesYesNoNo59
2063x50 6x34 opsins_off041.6684YesYesNoNo96
2073x55 5x61 opsins_off012.6723NoNoNoNo78
2083x54 5x61 opsins_off0.36674213.8949NoNoNoNo88
2093x54 5x65 opsins_off017.5138NoNoNoNo88
2105x65 6x34 opsins_off040.6502NoNoNoNo86
2115x49 5x50 opsins_off0.32077512.754NoNoNoNo59
2125x69 6x35 opsins_off010.3578NoNoNoNo57
2135x69 6x31 opsins_off011.3964NoNoNoYes54
2145x65 6x31 opsins_off024.3958NoNoNoYes84
215E2 NT opsins_off4.6535720.4907YesYesYesYes00

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
E3NTopsins_off21.696701322
NTNTShared237.28796.071322
E2NTShared78.226745.841312
3x22NTShared16.80336.471322
3x25NTopsins_off4.1933301322
1x32NTShared12.57679.11322
1x32E2Shared8.596678.611321
1x352x64opsins_off5.0066701022
1x35E2Shared4.943333.6251021
1x357x39opsins_off15.423301022
1x392x57Shared6.222.490322
1x392x60opsins_off9.0333300322
1x397x39opsins_off5.3933300322
2x577x42Shared8.275.770321
2x603x28Shared11.294.1150321
2x63E1x50Shared15.99335.190322
2x64E2Shared4.586673.181321
E1x50E2opsins_off4.3333301321
E1x50E2x50Shared7.916674.191322
3x25E2x50Shared7.287.281322
3x264x61Shared5.493332.911322
3x26E2Shared5.036675.3551321
3x287x42opsins_off8.5501311
3x28Ligopsins_off4.9166701310
3x29E2Shared5.316.520021
3x304x61Shared4.873336.670322
3x32LigShared6.046673.0550010
3x33E2Shared5.826675.041311
3x33Ligopsins_off8.7801310
3x366x48opsins_off4.6900021
3x373x40opsins_off6.6301312
3x373x41Shared5.813334.991312
3x375x461Shared7.399.631312
3x37LigShared5.416672.711310
3x406x44Shared10.156.5401722
3x415x461Shared4.936675.5351322
4x565x461Shared13.26675.6450322
4x594x60Shared7.145.841322
4x595x39Shared6.262.781322
4x60E2Shared13.966719.1651321
4x605x39Shared6.746.981322
5x38E2Shared4.945.561021
5x39E2Shared29.716717.5751321
5x42E2Shared9.966675.5651321
E2E2x52Shared15.73.811311
E2E2Shared138.603102.6151311
5x36E2Shared35.323318.4150021
E2E2x51Shared7.394.8651312
E2E2x50Shared6.096672.8251312
6x51E2Shared16.67679.4951311
7x34E2Shared17.845.821021
7x35E2Shared15.18334.1450321
7x39E2opsins_off8.0501021
E2Ligopsins_off4.8333301310
5x39E2x52Shared4.186673.2051321
6x55E2Shared8.896671.5150021
6x58E2opsins_off12.0901021
E2E3Shared9.393333.21312
5x37E2opsins_off7.5601021
5x37E3opsins_off9.7701022
5x395x42opsins_off7.2233301322
5x425x461Shared11.61332.181322
5x435x44opsins_off4.9733300312
5x475x51opsins_off4.8733300012
5x47Ligopsins_off6.3533300010
6x446x48Shared16.375.47501721
6x487x41Shared6.483332.59501712
6x487x45opsins_off8.23667001712
6x48LigShared14.09674.54501710
6x517x34opsins_off7.9833301312
6x51LigShared21.7718.321310
6x547x34opsins_off6.5933300322
6x547x37Shared6.484.3350322
6x58E3Shared8.373334.671022
7x397x42opsins_off9.101021
7x42LigShared8.743338.4351310
6x476x48Shared3.483335.8750021
3x304x57Shared3.233335.130322
7x38E2Shared2.783332.220021
5x355x38opsins_off2.4833300022
6x52Ligopsins_off2.0933300010
4x63E2Shared1.821.50021
6x526x53Shared1.31.9450012
E1x50NTopsins_on_gp03.41322
1x397x42opsins_on_gp02.160321
2x563x28opsins_on_gp02.4550021
2x593x28opsins_on_gp05.6450321
2x60E2opsins_on_gp02.4450321
2x63E2opsins_on_gp02.5350321
3x25E1x50opsins_on_gp05.5851322
3x25E2opsins_on_gp02.8251321
3x28E2x50opsins_on_gp04.5651312
3x30E2opsins_on_gp06.0350321
3x334x57opsins_on_gp05.6751312
3x33E2x52opsins_on_gp02.281311
3x374x53opsins_on_gp02.381312
3x374x56opsins_on_gp06.0751312
3x406x48opsins_on_gp013.66501721
4x565x43opsins_on_gp03.330321
4x57E2opsins_on_gp02.540321
4x59E2opsins_on_gp05.41321
4x60E2x52opsins_on_gp02.541321
4x61E2opsins_on_gp02.970321
5x35E2opsins_on_gp03.0750021
E2x52Ligopsins_on_gp05.721310
5x40E2opsins_on_gp05.20321
6x54E2opsins_on_gp03.5950321
7x37E2opsins_on_gp02.860321
5x395x43opsins_on_gp010.911321
5x435x461opsins_on_gp03.5550312
5x43Ligopsins_on_gp05.150310
5x476x52opsins_on_gp05.0050011
5x516x44opsins_on_gp05.910022
6x477x45opsins_on_gp04.3850022
6x517x37opsins_on_gp06.2551312
6x517x41opsins_on_gp02.671312
E3E3opsins_on_gp04.691322
1x392x65opsins_on_gp02.720322
2x592x60opsins_on_gp02.280322
2x64E1x50opsins_on_gp06.041322
2x65E2opsins_on_gp04.250321
3x22E2opsins_on_gp02.151321
5x395x40opsins_on_gp02.9951322
6x54E3opsins_on_gp03.750322
7x357x39opsins_on_gp02.670322
5x445x47opsins_on_gp02.1450021
6x496x52opsins_on_gp01.820021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
opsins_on_gp rhodopsin_on_gp
opsin1lw_on_gp
opsins_off rhodopsin_off
Network Difference
Value opsins_on_gp opsins_off
Imin 2.15 3.98667
Number of Linked Nodes 890 266
Number of Specific Nodes 632 (71.01%) 8  (3.01%)
Number of Shared Nodes 258 (28.99%) 258  (96.99%)
Number of Links 1162 317
Number of Specific Links 1005 (86.49%) 160  (50.47%)
Number of Shared Links 157 (13.51%) 157  (49.53%)
Number of Hubs 223 38
Number of Specific Hubs 201 (90.13%) 16  (42.11%)
Number of Shared Hubs 22 (9.87%) 22  (57.89%)
Average % Shared Neighbours (Jaccard) 10.67
Average % Shared Neighbours (Otsuka) 13.50
Average % Shared Neighbours (Overlap Coefficient) 16.30
Average % Shared Cliques (k3-6) 50.96
Graphlets Similarity 0.689979
Paths Difference
Value opsins_on_gp opsins_off
Number Of Nodes in MetaPath 154 55
Specific Nodes in MetaPath 142 (92.21%) 43  (78.18%)
Shared Nodes in MetaPath 258 (28.99%) 258  (28.99%)
Number Of Links MetaPath 160 58
Specific Links in MetaPath 157 (98.13%) 55  (94.83%)
Shared Links in MetaPath 157 (13.51%) 157  (13.51%)
Number of Shortest Paths 1779988 47383
Length Of Smallest Path 3 3
Average Path Length 26.2076 14.6951
Length of Longest Path 54 32
Minimum Path Strength 0.6825 0.751667
Average Path Strength 5.02869 7.72581
Maximum Path Strength 32.5025 56.775
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.974615 0.935553
Maximum Path Correlation 1 1
Minimum % Of Corr. Nodes 2.22222 4.54545
Average % Of Corr. Nodes 41.4444 57.6049
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 61.4587 39.5057
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download opsins_off_on_gp.zip<



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