Orange: nodes, hubs and links specific of orexin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of orexin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner orexin_off Avg Int. Strength orexin_on Avg Int. Strength orexin_off Num Of Links orexin_on Num Of Links ConSurf
1NT orexin_off5001025
21x52 orexin_off00426
32x551 orexin_off00415
42x56 orexin_off00427
5E1x52 orexin_off00426
63x38 orexin_off4033.3333437
73x54 orexin_off00418
83x56 orexin_off500436
94x61 orexin_off5033.3333426
105x40 orexin_off00436
115x43 orexin_off750435
125x66 orexin_off00425
136x37 orexin_off00428
146x44 orexin_off45100439
156x60 orexin_off00435
167x34 orexin_off2533.3333434
177x45 orexin_off5033.3333439
181x39 Shared100100657
191x50 Shared00449
202x42 Shared9033.3333558
212x57 Shared9533.3333447
22E1x50 Shared100100757
233x51 Shared100100558
243x52 Shared250444
254x57 Shared2533.3333557
26E2 Shared10010012113
27E2x52 Shared100100554
285x39 Shared5033.3333548
295x47 Shared70100448
305x58 Shared25100459
316x48 Shared7066.6667447
326x59 Shared9066.6667444
33E3 Shared100100663
347x39 Shared7533.3333545
357x42 Shared100100557
367x53 Shared60100569
378x50 Shared1000748
38Lig Shared1001009150
391x33 orexin_on00244
401x43 orexin_on00346
411x60 orexin_on033.3333356
42I1x50 orexin_on8033.3333348
432x46 orexin_on066.6667249
442x50 orexin_on35100259
453x24 orexin_on00245
463x32 orexin_on033.3333357
47I2 orexin_on0100355
485x65 orexin_on00248
496x41 orexin_on00248
506x51 orexin_on033.3333247
517x27 orexin_on033.3333141
527x38 orexin_on2566.6667355
537x49 orexin_on3033.3333349
548x53 orexin_on00347
558x54 orexin_on00347
   
Orange: nodes, hubs and links specific of orexin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of orexin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner orexin_off Recurrence orexin_on Recurrence orexin_off Hub1? orexin_on Hub1? orexin_off Hub2? orexin_on Hub2? ConSurf1 ConSurf2
11x31 NT orexin_off12.95010NoNoYesNo45
21x39 2x60 orexin_off30.80630YesYesNoNo77
32x60 Lig orexin_off42.41419.06726NoNoYesYes70
44x61 Lig orexin_off50.87010YesNoYesYes60
54x61 E2x52 orexin_off26.89990YesNoYesYes64
6E2 E2x52 orexin_off24.32662.72302YesYesYesYes34
7E2 NT orexin_off35.25410YesYesYesNo35
84x61 5x39 orexin_off25.20135.53546YesNoYesYes68
95x39 E2 orexin_off57.7345.3607YesYesYesYes83
105x39 5x43 orexin_off40.64150YesYesYesNo85
112x60 7x42 orexin_off10.30738.2341NoNoYesYes77
123x32 7x42 orexin_off10.33970NoYesYesYes77
133x32 Lig orexin_off23.40099.26641NoYesYesYes70
141x39 7x39 orexin_off14.11649.55497YesYesYesYes75
151x53 7x53 orexin_off11.47370NoNoYesYes99
163x36 6x48 orexin_off99.03730NoNoYesYes67
173x36 Lig orexin_off1001.36558NoNoYesYes60
181x52 8x54 orexin_off17.15733.68624YesNoNoYes67
198x50 8x54 orexin_off29.41310YesYesNoYes87
207x53 8x50 orexin_off60.77020YesYesYesYes98
211x60 I1x50 orexin_off13.06589.58748NoYesNoYes68
221x57 8x50 orexin_off16.24090NoNoYesYes78
231x57 2x44 orexin_off14.6581.22333NoNoNoNo76
241x58 2x44 orexin_off13.06580NoNoNoNo36
253x49 3x50 orexin_off10.65440NoNoNoNo99
262x39 3x50 orexin_off13.17230NoNoNoNo89
272x39 6x37 orexin_off14.38950NoNoYesNo88
283x46 6x37 orexin_off63.80640NoNoYesNo88
292x42 3x45 orexin_off64.56546.03536YesYesNoNo86
303x45 4x49 orexin_off65.17174.13737NoNoNoNo66
313x38 4x49 orexin_off66.65280.796586YesNoNoNo76
323x38 4x53 orexin_off72.18360YesNoNoNo78
333x37 4x53 orexin_off72.87332.54013NoNoNoNo78
343x37 4x57 orexin_off73.55365.0762NoNoYesYes77
352x56 3x32 orexin_off11.73292.10526YesNoNoYes77
36E1x50 E1x52 orexin_off10.32125.58423YesYesYesNo76
37E1x50 E2 orexin_off27.92740YesYesYesYes73
385x58 6x37 orexin_off52.58728.89657YesYesYesNo98
393x51 3x55 orexin_off14.50521.28429YesYesNoNo87
403x55 5x61 orexin_off15.76880NoNoNoNo79
413x54 5x61 orexin_off17.0231.03637YesNoNoNo89
423x54 5x65 orexin_off26.37230YesNoNoYes88
435x65 5x66 orexin_off27.54790NoYesYesNo85
445x58 6x38 orexin_off45.8160YesYesNoNo96
455x44 5x47 orexin_off14.6587.60415NoNoYesYes68
465x66 6x31 orexin_off14.39889.38427YesNoNoNo55
477x54 8x54 orexin_off11.46440NoNoNoYes77
481x52 8x58 orexin_off10.79330YesNoNoNo65
495x70 6x31 orexin_off10.50630NoNoNoNo05
507x34 7x38 orexin_off11.02470YesNoNoYes45
515x43 Lig Shared88.188520.1138YesNoYesYes50
522x57 7x42 Shared17.851516.4479YesYesYesYes77
531x43 2x57 Shared18.082914.2613NoYesYesYes67
541x53 2x47 Shared11.464440.9226NoNoNoNo99
557x49 7x53 Shared80.875722.3369NoYesYesYes99
567x45 7x49 Shared87.836757.5208YesNoNoYes99
576x48 7x45 Shared87.785858.5288YesYesYesNo79
588x50 I1x50 Shared16.240918.7401YesYesNoYes88
592x42 3x46 Shared64.625622.7149YesYesNoNo88
604x57 5x43 Shared77.751616.7608YesYesYesNo75
617x38 Lig Shared15.370712.2048NoYesYesYes50
625x62 5x66 Shared41.692110.7214NoNoYesNo65
635x62 6x38 Shared42.724213.1965NoNoNoNo66
645x47 6x49 Shared22.479912.5137YesYesNoNo86
656x49 6x50 Shared24.016514.9197NoNoNoNo69
666x50 7x37 Shared25.543818.4678NoNoNoNo96
676x51 7x37 Shared27.061919.6342NoYesNoNo76
686x51 Lig Shared28.570875.0904NoYesYesYes70
691x39 7x42 orexin_on0.68962315.2652YesYesYesYes77
702x64 7x38 orexin_on2.9852810.2743NoNoNoYes55
716x51 7x38 orexin_on024.0195NoYesNoYes75
726x51 7x41 orexin_on0100NoYesNoNo77
736x48 7x41 orexin_on1.6615899.9715YesYesNoNo77
742x50 7x49 orexin_on046.9457NoYesNoYes99
751x50 2x50 orexin_on3.3185247.3481YesYesNoYes99
761x50 2x47 orexin_on9.8537443.7391YesYesNoNo99
771x53 7x54 orexin_on039.9553NoNoNoNo97
787x54 8x50 orexin_on035.2571NoNoYesYes78
797x55 8x50 orexin_on016.2772NoNoYesYes58
806x44 6x48 orexin_on9.2937139.5692YesNoYesYes97
813x43 6x44 orexin_on4.9662123.3327NoNoYesNo99
823x43 7x53 orexin_on013.6111NoNoYesYes99
833x46 7x53 orexin_on022.4873NoNoYesYes89
842x46 3x42 orexin_on011.3066NoYesNoNo97
857x27 Lig orexin_on022.3613NoYesYesYes10
867x27 E2 orexin_on020.3861NoYesYesYes13
87E1x50 Lig orexin_on010.4735YesYesYesYes70
883x33 Lig orexin_on023.1376NoNoYesYes60
893x33 4x57 orexin_on2.6983218.0451NoNoYesYes67
903x34 4x57 orexin_on5.3642510.124NoNoYesYes57
913x40 6x48 orexin_on024.7836NoNoYesYes87
923x40 5x50 orexin_on3.3185223.6578NoNoNoNo89
935x54 6x44 orexin_on023.4424NoNoYesNo89
943x44 5x50 orexin_on021.3818NoNoNoNo79
953x44 5x53 orexin_on2.7168420.2317NoNoNoNo77
963x48 5x53 orexin_on019.0734NoNoNoNo67
973x48 3x52 orexin_on1.3653617.9069NoNoYesYes64
982x42 4x42 orexin_on011.5058YesYesNoNo87
995x54 6x41 orexin_on5.4012814.5824NoNoNoYes88
1006x38 6x41 orexin_on017.1144NoNoNoYes68
101E3 Lig orexin_on016.3422YesYesYesYes30
1024x56 4x57 orexin_on7.9931517.6346NoNoYesYes57
1037x38 7x42 orexin_on024.4503NoYesYesYes57

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x392x60orexin_off4.85602121
1x397x42Shared4.66555.623332122
2x563x32Shared6.2547.632021
2x567x42Shared3.6955.823332022
2x607x42Shared9.82158.323332112
2x60LigShared7.13355.426672110
2x647x38Shared8.82255.040021
E1x50E1x52Shared15.88613.02671112
3x25E1x50Shared6.26556.533331121
3x28E1x50orexin_off4.403500021
E1x50E2x50Shared9.794516.10671112
3x25E2x50Shared7.286.673331122
3x294x65Shared7.88553.913330012
3x29LigShared13.4565.996670010
3x327x42orexin_off6.200502012
3x32LigShared17.94515.992010
3x334x57Shared7.49359.533330012
3x334x61Shared4.1256.140011
3x366x48orexin_off6.43500012
3x36LigShared4.96810.18670010
4x575x43Shared4.91554.150021
4x61E2x52orexin_off7.964500012
4x615x39Shared9.69656.386670012
4x61Ligorexin_off7.237500010
E2E2Shared50.539555.611122
E2E2x52Shared9.755511.26331122
5x40E2x52Shared9.4816.156671122
5x39E2Shared8.92354.821122
5x395x40Shared5.33655.806671122
5x395x43orexin_off3.76401121
5x435x461Shared12.90658.646670012
5x43LigShared10.6594.826670010
6x487x41Shared8.01156.306677022
6x517x37Shared5.80353.613330112
6x51LigShared11.16755.706670110
6x547x34Shared11.63254.870021
6x55LigShared10.21357.773330010
6x57E3Shared10.96152.293333121
6x587x34Shared5.39655.373330021
E3E3Shared13.00156.466673111
7x30E3Shared9.24858.393330021
7x34E3orexin_off4.019503011
7x26E3Shared3.7131.446673121
7x277x31Shared11.3174.116670111
7x347x38orexin_off3.617503011
7x38LigShared14.068.453330110
2x677x31Shared5.38758.603331121
5x406x55orexin_off4.016501121
E1x50E2orexin_off3.45401112
2x5512x56orexin_off3.434500022
2x59E1x52orexin_off3.326500022
2x63E1x50orexin_off2.4500011
3x21E1x50Shared2.31850.940021
2x607x38orexin_on05.022111
2x63Ligorexin_on04.283330010
2x677x27orexin_on05.041121
E1x50Ligorexin_on05.023331110
3x283x29orexin_on03.390021
3x283x32orexin_on04.576670021
3x33Ligorexin_on04.016670010
4x65E2x52orexin_on05.413330022
7x27E2orexin_on012.38330112
6x517x38orexin_on07.070111
7x31Ligorexin_on07.890110
7x387x42orexin_on03.630112
E3Ligorexin_on03.726673110
7x27Ligorexin_on06.016670110
7x34Ligorexin_on03.146673010
6x517x41orexin_on03.073330112
2x5513x32orexin_on01.886670021
2x593x32orexin_on01.520021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
orexin_off ox2_off
ox1_off
orexin_on ox2_on
Network Difference
Value orexin_off orexin_on
Imin 3.5235 3.08333
Number of Linked Nodes 274 258
Number of Specific Nodes 21 (7.66%) 5  (1.94%)
Number of Shared Nodes 253 (92.34%) 253  (98.06%)
Number of Links 302 290
Number of Specific Links 130 (43.05%) 118  (40.69%)
Number of Shared Links 172 (56.95%) 172  (59.31%)
Number of Hubs 38 38
Number of Specific Hubs 17 (44.74%) 17  (44.74%)
Number of Shared Hubs 21 (55.26%) 21  (55.26%)
Average % Shared Neighbours (Jaccard) 43.32
Average % Shared Neighbours (Otsuka) 52.95
Average % Shared Neighbours (Overlap Coefficient) 62.54
Average % Shared Cliques (k3-6) 53.85
Graphlets Similarity 0.516277
Paths Difference
Value orexin_off orexin_on
Number Of Nodes in MetaPath 66 52
Specific Nodes in MetaPath 37 (56.06%) 23  (44.23%)
Shared Nodes in MetaPath 253 (92.34%) 253  (92.34%)
Number Of Links MetaPath 68 53
Specific Links in MetaPath 50 (73.53%) 35  (66.04%)
Shared Links in MetaPath 172 (56.95%) 172  (56.95%)
Number of Shortest Paths 51099 47334
Length Of Smallest Path 3 3
Average Path Length 14.1681 12.3086
Length of Longest Path 35 27
Minimum Path Strength 0.69275 0.513333
Average Path Strength 6.46122 5.5182
Maximum Path Strength 23.0443 20.0867
Minimum Path Correlation 0.7005 0.7
Average Path Correlation 0.925675 0.923166
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.125 4.34783
Average % Of Corr. Nodes 49.8689 51.2593
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 48.3615 44.1866
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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