Orange: nodes, hubs and links specific of sst2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of sst2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner sst2_off Avg Int. Strength sst2_on Avg Int. Strength sst2_off Num Of Links sst2_on Num Of Links ConSurf
11x32 sst2_off8.6853.85167423
2I1x50 sst2_off7.5652.415427
32x64 sst2_off5.0124.74889534
43x37 sst2_off6.714.37667536
53x50 sst2_off6.1426.26889539
64x50 sst2_off5.8657.29556439
74x56 sst2_off5.394.15444434
85x54 sst2_off4.90257.74417
96x44 sst2_off10.71254.90667429
107x27 sst2_off3.154.57222431
117x45 sst2_off6.39757.38889439
128x57 sst2_off3.3853.19425
131x39 Shared4.9486.138557
141x54 Shared4.72253.04447
151x60 Shared7.9855.865446
162x40 Shared7.91754.04167448
172x42 Shared5.89755.60833447
182x50 Shared6.1785.80333569
192x53 Shared10.688.70444466
20E1x50 Shared8.778335.31714678
21E1x52 Shared9.79256.034456
223x36 Shared8.566.36333447
233x38 Shared6.3886.3625547
243x51 Shared4.966.45658
25E2.W197 Shared15.36255.35278465
266x30 Shared6.77255.655446
276x48 Shared10.72836.97333668
286x51 Shared7.3765.6675546
296x52 Shared10.1227.05833547
307x42 Shared6.1116710.8547657
317x53 Shared6.7165.555549
328x50 Shared8.4744.41167548
33Lig Shared22.60579.5328621210
342x51 sst2_on6.413335.3225347
352x54 sst2_on3.633333.99167346
363x32 sst2_on7.215.51933356
373x35 sst2_on11.05335.9575347
383x56 sst2_on7.0255.16083245
39I2x57 sst2_on8.365.67556365
405x39 sst2_on11.4054.83083247
415x47 sst2_on12.15675.55667358
425x50 sst2_on6.8852.83249
435x51 sst2_on7.193333.4925346
445x62 sst2_on03.20083045
455x64 sst2_on3.873.222255
46I3.I240 sst2_on04.00667040
476x26 sst2_on11.91.98917344
486x45 sst2_on9.993.05333146
496x54 sst2_on11.12673.31344
506x55 sst2_on14.55.57267156
517x49 sst2_on3.836.48417349
527x52 sst2_on3.0252.75917248
538x49 sst2_on6.484.55917345
   
Orange: nodes, hubs and links specific of sst2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of sst2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner sst2_off Recurrence sst2_on Recurrence sst2_off Hub1? sst2_on Hub1? sst2_off Hub2? sst2_on Hub2? ConSurf1 ConSurf2
11x39 2x61 sst2_off17.43011.84214YesYesNoNo76
21x39 7x42 sst2_off22.28880YesYesYesYes77
33x32 7x42 sst2_off13.68270.378683NoYesYesYes67
41x40 2x61 sst2_off16.03030NoNoNoNo56
52x54 2x57 sst2_off28.79240NoYesNoNo67
61x47 2x54 sst2_off26.28680NoNoNoYes66
71x47 2x51 sst2_off25.2414.42192NoNoNoYes67
82x53 3x35 sst2_off1002.422YesYesNoYes67
92x50 3x35 sst2_off98.26240YesYesNoYes97
107x49 7x53 sst2_off94.65660NoYesYesYes99
117x53 8x50 sst2_off44.47950YesYesYesYes98
128x50 I1x50 sst2_off32.30020YesYesYesNo87
138x53 I1x50 sst2_off28.18240NoNoYesNo57
141x60 8x53 sst2_off21.79860YesYesNoNo65
151x54 2x44 sst2_off25.18110YesYesNoNo76
161x60 8x56 sst2_off10.20750YesYesNoNo64
172x43 7x53 sst2_off69.84040NoNoYesYes89
182x43 3x46 sst2_off68.62031.26228NoNoNoNo89
192x42 3x46 sst2_off17.60990YesYesNoNo79
203x46 6x37 sst2_off52.15430NoNoNoNo98
213x50 6x37 sst2_off50.75980YesNoNoNo98
222x44 2x45 sst2_off22.18530NoNoNoNo69
233x29 Lig sst2_off29.01570NoNoYesYes50
243x29 E2x50 sst2_off25.49160NoNoNoNo59
25E1x50 E2x50 sst2_off23.06771.93681YesYesNoNo89
261x40 2x62 sst2_off14.64130NoNoNoNo55
27E1x49 E1x51 sst2_off15.63819.64065NoNoNoNo44
283x36 3x37 sst2_off21.72786.06288YesYesYesNo76
293x36 6x52 sst2_off21.98920YesYesYesYes77
305x47 6x52 sst2_off37.36048.09041NoYesYesYes87
315x47 5x51 sst2_off21.60791.32934NoYesNoYes86
325x51 5x54 sst2_off16.26990NoYesYesNo67
333x50 6x34 sst2_off41.65260YesNoNoNo97
346x30 6x34 sst2_off40.20370YesYesNoNo67
353x54 6x30 sst2_off29.67480NoNoYesYes86
363x54 5x61 sst2_off28.1171.25833NoNoNoNo89
373x51 5x61 sst2_off26.66270YesYesNoNo89
38E2x52 Lig sst2_off18.64480NoNoYesYes50
39E2.W197 E2x52 sst2_off15.55640YesYesNoNo55
405x36 Lig sst2_off11.24791.6883NoNoYesYes40
415x44 6x52 sst2_off10.88842.28393NoNoYesYes57
425x47 6x49 sst2_off13.58462.33127NoYesNoNo85
436x51 6x52 sst2_off15.77970YesYesYesYes67
447x41 7x42 sst2_off44.50680NoNoYesYes77
456x48 7x41 sst2_off27.49615.53824YesYesNoNo87
461x53 7x53 sst2_off15.22410NoNoYesYes99
471x54 2x47 sst2_off14.07482.21293YesYesNoNo79
481x53 2x47 sst2_off13.82430NoNoNoNo99
492x62 E1x52 sst2_off12.73491.94075NoNoYesYes56
506x51 7x41 sst2_off16.51515.22662YesYesNoNo67
516x48 6x52 sst2_off15.41486.74135YesYesYesYes87
523x32 Lig Shared69.235820.6856NoYesYesYes60
532x57 7x42 Shared34.086824.8984NoNoYesYes77
542x53 3x32 Shared55.776520.015YesYesNoYes66
552x50 7x49 Shared94.700133.474YesYesNoYes99
561x54 2x51 Shared24.282459.1456YesYesNoYes77
572x45 4x50 Shared16.06337.1544NoNoYesNo99
58E1x50 E1x52 Shared18.290820.9538YesYesYesYes86
59E1x51 E1x52 Shared17.544511.5459NoNoYesYes46
603x36 Lig Shared44.544961.9502YesYesYesYes70
613x36 6x48 Shared11.74946.3571YesYesYesYes78
622x53 7x42 Shared45.721429.6241YesYesYesYes67
637x31 7x35 sst2_on015.2538NoNoNoNo32
647x31 Lig sst2_on2.92520.1767NoNoYesYes30
657x42 Lig sst2_on044.3533YesYesYesYes70
662x53 7x46 sst2_on069.5949YesYesNoNo68
672x50 7x46 sst2_on0.588267100YesYesNoNo98
681x50 2x50 sst2_on6.9230368.873NoNoYesYes99
692x53 3x36 sst2_on022.9222YesYesYesYes67
702x54 7x42 sst2_on030.5945NoYesYesYes67
712x54 7x46 sst2_on031.4465NoYesNoNo68
721x50 2x51 sst2_on067.0506NoNoNoYes97
731x54 2x48 sst2_on1.6504253.134YesYesNoNo77
742x44 2x48 sst2_on051.1144NoNoNoNo67
751x57 2x44 sst2_on049.0868NoNoNoNo76
761x57 8x50 sst2_on1.6068447.0475NoNoYesYes78
771x56 8x50 sst2_on020.3187NoNoYesYes78
782x40 8x50 sst2_on3.1374321.7901YesYesYesYes88
796x48 7x45 sst2_on8.2411958.976YesYesYesNo89
807x45 7x49 sst2_on058.7985YesNoNoYes99
813x43 7x49 sst2_on078.8135NoNoNoYes99
823x43 7x53 sst2_on078.1823NoNoYesYes99
833x50 7x53 sst2_on070.7112YesNoYesYes99
843x50 5x58 sst2_on070.7467YesNoNoNo99
853x47 5x58 sst2_on5.4632651.5246NoNoNoNo99
863x47 5x57 sst2_on049.7258NoNoNoNo97
873x51 5x57 sst2_on5.2072648.8146YesYesNoNo87
883x51 3x56 sst2_on1.7157838.46YesYesNoYes85
893x56 I2x52 sst2_on036.4009NoYesNoNo54
90I2x52 I2x56 sst2_on034.3497NoNoNoNo43
914x41 I2x56 sst2_on1.6340833.3123NoNoNoNo53
924x38 4x41 sst2_on032.4366NoNoNoNo65
934x38 I2x57 sst2_on029.2533NoNoNoYes65
942x38 I2x57 sst2_on2.4020913.0527NoNoNoYes45
952x38 2x42 sst2_on010.753NoNoYesYes47
963x49 I2x57 sst2_on5.6974811.8457NoNoNoYes85
972x42 3x49 sst2_on010.6899YesYesNoNo78
982x42 4x42 sst2_on9.4939814.386YesYesNoNo77
992x46 2x50 sst2_on1.1819832.3419NoNoYesYes99
1002x46 3x42 sst2_on046.7634NoNoNoNo98
1012x45 3x42 sst2_on044.373NoNoNoNo98
1022x46 7x49 sst2_on0.5664816.8001NoNoNoYes99
1032x63 Lig sst2_on040.7163NoNoYesYes50
1042x63 E1x50 sst2_on1.4870139.1779NoNoYesYes58
1053x38 4x50 sst2_on8.0832332.3025YesYesYesNo79
1063x38 4x53 sst2_on1.6504220.0347YesYesNoNo77
1073x34 4x53 sst2_on017.5575NoNoNoNo57
1083x34 4x57 sst2_on012.5794NoNoNoNo57
1093x40 6x48 sst2_on010.824NoNoYesYes88
1105x39 Lig sst2_on010.4651NoYesYesYes70
111E2.W197 Lig sst2_on023.0287YesYesYesYes50
1125x35 E2.W197 sst2_on7.255312.7806NoNoYesYes35
1135x58 6x37 sst2_on027.707NoNoNoNo98
1145x62 6x37 sst2_on026.784NoYesNoNo58
1155x62 6x30 sst2_on023.6401NoYesYesYes56
1165x66 6x30 sst2_on015.8258NoNoYesYes46
1175x66 I3.I240 sst2_on014.6621NoNoNoYes40
1186x26 I3.I240 sst2_on011.1002NoYesNoYes40
119E3.I284 Lig sst2_on012.7845NoNoYesYes10
1207x30 E3.I284 sst2_on011.1199NoNoNoNo41
1212x40 I1x49 sst2_on015.3446YesYesNoNo85
1228x49 I1x49 sst2_on3.3498613.175NoYesNoNo55
1232x41 4x42 sst2_on7.9416112.0074NoNoNoNo57
1241x39 2x57 sst2_on019.9479YesYesNoNo77

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x322x64sst2_off4.4301011
1x32E1.E106sst2_off10.5201011
1x32Ligsst2_off16.8701010
1x351x39sst2_off8.2101022
1x352x64sst2_off4.4701021
1x357x35Shared6.794.523331021
1x392x64Shared5.055.886671021
1x397x42sst2_off4.9601021
2x533x32Shared5.976.766671121
2x533x35Shared21.7510.87331122
2x537x42Shared12.3819.25331121
2x577x42Shared4.6917.58330021
2x603x28sst2_off4.4700012
2x63E1x50Shared10.954.016670112
2x64Ligsst2_off7.9401010
E1.E106Ligsst2_off13.9101010
E1x50E2x50Shared18.283.051122
3x29E2x50sst2_off4.8601012
3x29Ligsst2_off5.6601010
3x327x42Shared4.67.663331111
3x32LigShared11.067.91110
3x363x37Shared10.543.123331112
3x366x48Shared7.678.396671112
3x366x52sst2_off7.8901112
3x36LigShared8.148.861110
4x61E2x52Shared7.363.433330021
4x64E2.W197sst2_off7.7200021
E2x51LigShared8.266.523331010
E2.W197E2x52sst2_off15.2700111
E2x52Ligsst2_off801010
5x35E2.W197Shared23.433.750021
5x39E2.W197Shared15.033.673330111
5x365x40sst2_off6.0401112
5x366x58sst2_off5.0901111
5x36LigShared23.311.83671110
5x376x59Shared9.521.586670021
5x395x43sst2_off7.7800111
6x486x51sst2_off5.0101021
6x486x52Shared8.684.181022
6x487x41Shared18.1911.32331022
6x516x52sst2_off8.2501112
6x516x55Shared14.59.666671111
6x517x37Shared3.934.366671112
6x517x41Shared5.193.891112
6x547x33sst2_off9.9501112
6x547x34Shared13.936.076671111
6x54Ligsst2_off9.501110
6x61Ligsst2_off4.4100010
7x31E3.P286sst2_off6.6901111
E3.P286LigShared14.343.341110
7x277x30Shared5.97.370021
7x30Ligsst2_off5.401010
7x31LigShared14.225.376671110
7x347x38sst2_off7.8701112
7x34LigShared17.1318.63671110
7x35Ligsst2_off15.5301010
7x387x42sst2_off5.0500021
7x417x42sst2_off4.9901021
1x31Ligsst2_off3.7400010
E2.S192LigShared3.743.730110
E2.N196E2.R184Shared3.6210.04330022
E3.P286E3.S285Shared3.563.561112
3x294x65sst2_off3.2201012
1x362x64Shared3.171.060021
5x406x59sst2_off3.0700021
1x301x32sst2_off2.9200021
E2.N196E2x51sst2_off2.9200021
2x542x57sst2_off2.8300122
5x32Ligsst2_off2.2501010
5x325x33Shared1.861.241012
7x317x32sst2_off1.7401112
6x596x60sst2_off1.6200112
7x27E3.I284sst2_off1.5200021
1x311x32sst2_on03.973330011
1x327x31sst2_on03.731011
1x392x57sst2_on07.813331022
1x397x38sst2_on04.626671022
2x532x54sst2_on04.976671122
2x533x36sst2_on05.073331121
2x547x42sst2_on03.990121
2x60Ligsst2_on08.260010
2x63Ligsst2_on09.286670110
2x647x35sst2_on07.31011
3x375x43sst2_on03.890021
4x615x39sst2_on04.186670021
5x36E2.W197sst2_on07.396671111
E2.W197Ligsst2_on03.006670110
5x39Ligsst2_on09.536670110
5x406x55sst2_on07.553330021
5x436x52sst2_on05.826670112
5x43Ligsst2_on06.943330110
6x51Ligsst2_on04.746671110
6x546x55sst2_on03.223331111
6x557x34sst2_on04.430111
6x606x61sst2_on03.576670021
E3.I284Ligsst2_on03.980110
7x317x35sst2_on06.453331111
7x42Ligsst2_on05.783331110
3x323x35sst2_on03.591112
E2.R184E2.W197sst2_on010.99670021
6x547x37sst2_on03.061112
6x55Ligsst2_on02.990110
7x307x33sst2_on03.31012
5x32E2.W197sst2_on03.293331011
7x30E3.I284sst2_on02.381011
E2.N186E2.S192sst2_on01.986670021
3x29E2x52sst2_on01.946671011
4x605x39sst2_on01.926670021
6x58Ligsst2_on01.866670010
6x59Ligsst2_on01.746670110
1x357x32sst2_on01.711022
2x563x32sst2_on01.676670021
6x546x57sst2_on00.881112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
sst2_off 7XNA-SST2-CYN154806
sst2_on 7XMR-SST2-Somatostatin-14-Gi1/&β;1/&γ;2
7XAU-SST2-Octreotide-Gi1/&β;1/&γ;2
7YAC-SST2-Paltusotine-Gi1/&β;1/&γ;2
Network Difference
Value sst2_off sst2_on
Imin 3.92 2.92
Number of Linked Nodes 268 281
Number of Specific Nodes 11 (4.10%) 24  (8.54%)
Number of Shared Nodes 257 (95.90%) 257  (91.46%)
Number of Links 295 311
Number of Specific Links 151 (51.19%) 167  (53.70%)
Number of Shared Links 144 (48.81%) 144  (46.30%)
Number of Hubs 33 41
Number of Specific Hubs 12 (36.36%) 20  (48.78%)
Number of Shared Hubs 21 (63.64%) 21  (51.22%)
Average % Shared Neighbours (Jaccard) 32.40
Average % Shared Neighbours (Otsuka) 41.44
Average % Shared Neighbours (Overlap Coefficient) 49.69
Average % Shared Cliques (k3-6) 78.38
Graphlets Similarity 0.57859
Paths Difference
Value sst2_off sst2_on
Number Of Nodes in MetaPath 57 68
Specific Nodes in MetaPath 30 (52.63%) 41  (60.29%)
Shared Nodes in MetaPath 257 (95.90%) 257  (95.90%)
Number Of Links MetaPath 62 73
Specific Links in MetaPath 51 (82.26%) 62  (84.93%)
Shared Links in MetaPath 144 (48.81%) 144  (48.81%)
Number of Shortest Paths 42116 61940
Length Of Smallest Path 3 3
Average Path Length 12.619 14.1544
Length of Longest Path 31 35
Minimum Path Strength 1.57 0.768333
Average Path Strength 7.61798 5.76054
Maximum Path Strength 20.085 18.4183
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.92698 0.926047
Maximum Path Correlation 1 0.99
Minimum % Of Corr. Nodes 4.7619 3.7037
Average % Of Corr. Nodes 55.0219 47.2682
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 40.618 42.8128
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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