Orange: nodes, hubs and links specific of sst_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of sst_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner sst_off Avg Int. Strength sst_on Avg Int. Strength sst_off Num Of Links sst_on Num Of Links ConSurf
11x54 sst_off4.72252.35667427
2I1x50 sst_off7.5654.13417
32x64 sst_off5.0125.115514
43x38 sst_off6.3887.84889537
53x50 sst_off6.1427.24778539
64x56 sst_off5.394.66583424
75x54 sst_off4.90255.60167437
86x44 sst_off10.71255.22944439
96x52 sst_off10.1228.38056537
107x45 sst_off6.39758.51444439
118x57 sst_off3.3851.595425
121x32 Shared8.6853.14443
131x39 Shared4.9484.38208547
141x60 Shared7.9853.605446
152x40 Shared7.91754.13458448
162x42 Shared5.89755.46867457
172x50 Shared6.1785.304559
182x53 Shared10.688.69458446
19E1x50 Shared8.9857.02167668
20E1x52 Shared9.79256.45167446
213x36 Shared8.565.36542447
223x37 Shared6.714.52944566
233x51 Shared4.966.26792648
244x50 Shared5.8656.25633459
25E2 Shared21.740911.209111153
266x30 Shared6.77255.82067456
276x48 Shared10.72838.58542648
286x51 Shared7.3766.07917546
297x42 Shared6.111677.97389667
307x53 Shared6.7167.465559
318x50 Shared8.4744.96861568
32Lig Shared23.5497.8715820190
331x35 sst_on6.493.12542345
342x51 sst_on6.413334.31347
352x57 sst_on4.093335.89667347
363x32 sst_on7.217.57708346
373x34 sst_on4.576674.98333345
38I2x57 sst_on8.364.01021385
394x38 sst_on8.0852.10417246
404x53 sst_on9.593.50792147
41E2x52 sst_on10.214.00625345
425x39 sst_on11.4055.39247
435x58 sst_on8.96.48278269
445x62 sst_on02.28583045
455x64 sst_on3.872.89917245
46I3 sst_on04.23083040
476x40 sst_on5.968.12148
486x49 sst_on5.913333.86417345
496x55 sst_on14.55.91375146
507x35 sst_on11.164.29708242
517x39 sst_on2.7955.18583245
527x47 sst_on1.772.55348
538x49 sst_on6.483.36958345
   
Orange: nodes, hubs and links specific of sst_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of sst_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner sst_off Recurrence sst_on Recurrence sst_off Hub1? sst_on Hub1? sst_off Hub2? sst_on Hub2? ConSurf1 ConSurf2
11x39 2x61 sst_off10.42190.942492YesYesNoNo76
21x39 7x42 sst_off16.07050YesYesYesYes77
33x32 7x42 sst_off14.91790.163124NoYesYesYes67
42x54 2x57 sst_off28.55280NoNoNoYes67
51x47 2x54 sst_off26.07920NoNoNoNo66
61x47 2x51 sst_off25.04623.32721NoNoNoYes67
72x53 3x35 sst_off1005.14746YesYesNoNo67
82x50 3x35 sst_off98.25490YesYesNoNo97
92x50 7x49 sst_off94.66670YesYesNoNo99
107x53 8x50 sst_off44.44930YesYesYesYes98
118x50 I1x50 sst_off32.31490YesYesYesNo87
128x53 I1x50 sst_off28.18850NoNoYesNo57
131x60 8x53 sst_off21.79520YesYesNoNo65
141x54 2x51 sst_off24.10033.32721YesNoNoYes77
151x54 2x44 sst_off25.04620YesNoNoNo76
161x60 8x56 sst_off10.18810YesYesNoNo64
172x43 7x53 sst_off69.75640NoNoYesYes89
182x43 3x46 sst_off68.53320NoNoNoNo89
193x46 6x37 sst_off52.10940NoNoNoNo98
203x50 6x37 sst_off50.71220YesNoNoNo98
212x44 2x45 sst_off22.0670NoNoNoNo69
222x45 4x50 sst_off15.9787.93869NoNoYesYes99
233x29 Lig sst_off15.90190.841511NoNoYesYes50
243x29 E2x50 sst_off12.39530NoNoNoNo59
25E1x50 E2x50 sst_off10.20440.0181249YesYesNoNo89
26E1x50 E1x52 sst_off20.03919.021YesYesYesYes86
272x59 E1x52 sst_off18.75073.53953NoNoYesYes56
28E2x51 Lig sst_off22.19750.779369NoNoYesYes40
29E2 E2x51 sst_off21.21340.0699102YesYesNoNo34
30E1x50 E2 sst_off20.68077.34574YesYesYesYes83
31E2x52 Lig sst_off24.21444.33961NoYesYesYes50
32E2 E2x52 sst_off22.19750.38839YesYesNoYes35
333x36 6x52 sst_off23.55660YesYesYesNo77
346x44 6x48 sst_off10.07949.06243YesNoYesYes98
355x47 6x52 sst_off38.35498.80609NoNoYesNo87
365x47 5x51 sst_off22.17570NoNoNoNo86
375x51 5x54 sst_off16.69570NoNoYesNo67
383x50 6x34 sst_off41.66030YesNoNoNo97
396x30 6x34 sst_off40.20880YesYesNoNo67
403x54 6x30 sst_off29.69990NoNoYesYes86
413x54 5x61 sst_off28.13961.40856NoNoNoNo89
423x51 5x61 sst_off26.69890YesYesNoNo89
435x36 Lig sst_off11.81366.02263NoNoYesYes40
445x44 6x52 sst_off11.17215.86986NoNoYesNo57
455x47 6x49 sst_off13.93937.40271NoNoNoYes85
466x51 6x52 sst_off15.91280YesYesYesNo67
477x41 7x42 sst_off44.26990NoNoYesYes77
486x48 7x41 sst_off27.48183.57836YesYesNoNo87
491x53 7x53 sst_off15.23870NoNoYesYes99
501x54 2x47 sst_off14.04261.6649YesNoNoNo79
511x53 2x47 sst_off13.8360NoNoNoNo99
526x51 7x41 sst_off16.33683.59908YesYesNoNo67
536x48 6x52 sst_off15.38550YesYesYesNo87
543x32 Lig Shared75.089715.1187NoYesYesYes60
552x57 7x42 Shared33.815425.6933NoYesYesYes77
562x53 3x32 Shared60.372913.705YesYesNoYes66
577x49 7x53 Shared94.617898.6795NoNoYesYes99
582x42 3x46 Shared17.560158.8669YesYesNoNo79
593x36 Lig Shared46.640272.5512YesYesYesYes70
603x36 3x37 Shared21.289624.6472YesYesYesYes76
613x36 6x48 Shared12.650997.2424YesYesYesYes78
622x53 7x42 Shared41.13315.4838YesYesYesYes67
631x39 7x39 sst_on4.9200810.862YesYesNoYes75
641x39 2x57 sst_on020.16YesYesNoYes77
652x53 7x46 sst_on022.77YesYesNoNo68
662x50 7x46 sst_on0.58714821.2242YesYesNoNo98
671x50 2x50 sst_on6.9316111.5067NoNoYesYes99
687x42 Lig sst_on038.1321YesYesYesYes70
696x48 7x45 sst_on8.51365100YesYesYesNo89
707x45 7x49 sst_on099.3786YesNoNoNo99
713x50 7x53 sst_on072.7117YesNoYesYes99
723x46 3x50 sst_on059.3822NoNoYesNo99
732x38 2x42 sst_on027.8165NoNoYesYes47
742x38 I2x57 sst_on2.4029627.1588NoNoNoYes45
752x37 I2x57 sst_on040.1724NoNoNoYes75
762x37 2x40 sst_on1.7342638.795NoNoYesYes78
772x40 8x50 sst_on3.1097134.3829YesYesYesYes88
781x56 8x50 sst_on011.9417NoNoYesYes78
792x42 3x49 sst_on027.9149YesYesNoNo78
803x49 I2x57 sst_on5.7029527.2675NoNoNoYes85
813x37 Lig sst_on010.8335YesYesYesYes60
823x37 4x53 sst_on019.3185YesYesNoYes67
833x34 4x50 sst_on4.8222211.8511NoYesYesYes59
84E2 Lig sst_on020.0357YesYesYesYes30
855x43 Lig sst_on010.2923NoNoYesYes40
863x50 5x58 sst_on031.6952YesNoNoYes99
873x47 5x58 sst_on5.6050924.6213NoNoNoYes99
886x40 7x53 sst_on026.206NoYesYesYes89
895x58 6x40 sst_on024.4349NoYesNoYes98
903x47 5x57 sst_on023.3267NoNoNoNo97
913x51 5x57 sst_on5.2136620.4578YesYesNoNo87
923x51 3x55 sst_on8.611516.1156YesYesNoNo87
935x43 6x52 sst_on016.1182NoNoYesNo47
945x58 6x37 sst_on023.0237NoYesNoNo98
955x62 6x37 sst_on021.7084NoYesNoNo58
965x62 6x30 sst_on017.3791NoYesYesYes56
975x66 6x30 sst_on010.2509NoNoYesYes46
988x47 8x50 sst_on6.6706510.7972NoNoYesYes88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x322x64sst_off4.4301411
1x32E1sst_off10.5201411
1x32Ligsst_off16.8701410
1x351x39Shared8.213.021422
1x352x64sst_off4.4701421
1x357x35Shared6.794.251671421
1x392x64sst_off5.0501021
1x397x42sst_off4.9601021
2x533x32Shared5.975.773331121
2x537x42Shared12.3818.39671121
2x577x42Shared4.6911.31670021
2x603x28sst_off4.4700112
2x63E1x50Shared10.955.713330112
2x64Ligsst_off7.9401010
E1Ligsst_off13.9101010
E1x49E2Shared11.224.493331121
E1x50E2Shared6.934.526671121
E1x50E2x50Shared18.283.4851122
3x22E2Shared5.235.751670121
3x29E2x50sst_off4.8601012
3x29LigShared5.663.968331010
3x327x42Shared4.66.131671111
3x32LigShared11.0612.411110
3x363x37Shared10.544.051671111
3x366x48Shared7.677.108331112
3x366x52sst_off7.8901112
3x36LigShared8.147.7351110
3x373x41sst_off4.2900112
3x374x56Shared9.187.648330112
3x374x57Shared5.024.291670112
3x375x461sst_off4.5200112
4x61E2x52Shared7.364.571670021
4x64E2Shared23.0215.781121
E2E2Shared57.6144.2051111
E2E2x51Shared5.813.7951111
E2x51LigShared8.265.401671110
E2E2x52Shared15.274.591111
E2x52LigShared83.781671110
5x35E2Shared38.47.783330121
5x39E2Shared15.039.856671111
5x365x40sst_off6.0401112
5x366x58sst_off5.0901112
5x36LigShared23.35.918331110
5x395x43sst_off7.7801111
6x486x51sst_off5.0101021
6x486x52sst_off8.6801022
6x487x41Shared18.198.751671022
6x516x52sst_off8.2501112
6x516x55Shared14.56.588331111
6x517x37sst_off3.9301112
6x517x41Shared5.193.9251112
6x547x33sst_off9.9501012
6x547x34Shared13.933.778331011
6x54Ligsst_off9.501010
6x61Ligsst_off4.4100010
7x31E3sst_off6.6901011
E3LigShared14.343.661110
7x277x30Shared5.93.6850021
7x30Ligsst_off5.401010
7x31Ligsst_off14.2201010
7x347x38sst_off7.8701112
7x34LigShared17.139.318331110
7x35Ligsst_off15.5301410
7x387x42Shared5.053.6050021
7x417x42sst_off4.9901021
1x31Ligsst_off3.7400010
3x294x65sst_off3.2201012
1x362x64sst_off3.1700021
5x406x59sst_off3.0700022
5x34E2sst_off3.0200021
1x301x32sst_off2.9200021
5x32Ligsst_off2.2501110
5x325x33Shared1.861.3851112
3x334x57sst_off1.7600022
3x334x61sst_off1.7600022
7x317x32sst_off1.7401012
6x596x60Shared1.624.2650022
1x392x57sst_on03.906671022
2x607x42sst_on04.131670111
2x60Ligsst_on011.0950110
2x63Ligsst_on04.643330110
2x647x35sst_on05.1151011
3x374x53sst_on03.30112
3x375x43sst_on03.890111
4x605x39sst_on03.853330021
E2E2x50sst_on05.018331112
5x36E2sst_on06.961111
E2Ligsst_on05.573331110
5x39Ligsst_on04.768331110
5x406x55sst_on04.491670021
5x436x52sst_on04.163330112
5x43Ligsst_on06.341670110
6x517x38sst_on04.311112
6x51Ligsst_on09.493331110
7x317x35sst_on03.226671011
7x42Ligsst_on04.261671110
2x563x32sst_on05.993330021
3x37Ligsst_on03.9950110
5x39E2x52sst_on03.081671111
6x547x37sst_on05.571012
6x55Ligsst_on09.2750110
5x32E2sst_on03.171671111
1x321x35sst_on04.3751412
1x327x35sst_on04.5951411
5x325x35sst_on03.7051112
6x556x58sst_on03.30112
7x33E3sst_on03.650021
3x333x36sst_on02.566670021
E1E2sst_on02.426671011
3x414x53sst_on02.420022
1x311x32sst_on01.986670011
6x546x57sst_on01.931012
6x606x61sst_on01.788330021
7x307x33sst_on01.651012
1x321x36sst_on01.603331412
5x366x59sst_on01.171112
1x357x32sst_on00.8551422
5x345x35sst_on00.2166670022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
sst_off sst2_off
sst_on sst2_on
sst4_on
Network Difference
Value sst_off sst_on
Imin 3.92 3.02833
Number of Linked Nodes 251 263
Number of Specific Nodes 8 (3.19%) 20  (7.60%)
Number of Shared Nodes 243 (96.81%) 243  (92.40%)
Number of Links 281 296
Number of Specific Links 145 (51.60%) 160  (54.05%)
Number of Shared Links 136 (48.40%) 136  (45.95%)
Number of Hubs 32 42
Number of Specific Hubs 11 (34.38%) 21  (50.00%)
Number of Shared Hubs 21 (65.63%) 21  (50.00%)
Average % Shared Neighbours (Jaccard) 31.51
Average % Shared Neighbours (Otsuka) 40.18
Average % Shared Neighbours (Overlap Coefficient) 48.05
Average % Shared Cliques (k3-6) 51.16
Graphlets Similarity 0.567022
Paths Difference
Value sst_off sst_on
Number Of Nodes in MetaPath 56 43
Specific Nodes in MetaPath 34 (60.71%) 21  (48.84%)
Shared Nodes in MetaPath 243 (96.81%) 243  (96.81%)
Number Of Links MetaPath 62 45
Specific Links in MetaPath 53 (85.48%) 36  (80.00%)
Shared Links in MetaPath 136 (48.40%) 136  (48.40%)
Number of Shortest Paths 42195 64614
Length Of Smallest Path 3 3
Average Path Length 12.4209 13.5046
Length of Longest Path 29 27
Minimum Path Strength 1.57 0.388333
Average Path Strength 7.73778 6.03531
Maximum Path Strength 30.71 14.8567
Minimum Path Correlation 0.7 0.701667
Average Path Correlation 0.923476 0.909487
Maximum Path Correlation 1 0.985
Minimum % Of Corr. Nodes 5 4.54545
Average % Of Corr. Nodes 53.6156 42.7253
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 42.2297 50.2087
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download sst_off_on.zip<



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