Orange: nodes, hubs and links specific of vasop-oxy_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of vasop-oxy_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner vasop-oxy_off Avg Int. Strength vasop-oxy_on Avg Int. Strength vasop-oxy_off Num Of Links vasop-oxy_on Num Of Links ConSurf
11x57 vasop-oxy_off2.75754.13333437
2I1x51 vasop-oxy_off9.1540507
32x38 vasop-oxy_off6.79251.87417
42x41 vasop-oxy_off6.474.92425
53x44 vasop-oxy_off4.9452.24427
63x50 vasop-oxy_off7.6153.63629
73x54 vasop-oxy_off5.1251.47418
8I2 vasop-oxy_off6.5880507
94x61 vasop-oxy_off7.576.94333536
104x64 vasop-oxy_off7.5358.165425
115x58 vasop-oxy_off8.39254.41667439
126x40 vasop-oxy_off5.144.48428
136x41 vasop-oxy_off6.061.645428
147x53 vasop-oxy_off7.57756.01667439
157x56 vasop-oxy_off7.7656.63667437
16Lig Shared10.8889.6490910220
172x42 Shared5.9354.744658
182x56 Shared12.89258.055447
19E1x50 Shared6.1356.85333467
203x29 Shared8.6469.175544
213x33 Shared8.86256.196455
223x37 Shared6.4426.264556
234x50 Shared4.40754.6175449
244x65 Shared8.40810.8875546
25E2 Shared14.717512.248612144
265x39 Shared7.0144.3475547
276x48 Shared8.843338.5075648
28E3 Shared6.20759.51714474
297x34 Shared3.19756.56454
301x28 vasop-oxy_on9.613.9675145
311x31 vasop-oxy_on9.615.2725145
321x35 vasop-oxy_on6.566675.6345
331x60 vasop-oxy_on06.495040
34I1 vasop-oxy_on05.72286070
352x40 vasop-oxy_on2.446.01667169
362x50 vasop-oxy_on4.873338.395349
372x53 vasop-oxy_on3.425.0775147
382x60 vasop-oxy_on5.966.625247
392x63 vasop-oxy_on6.84.52245
403x30 vasop-oxy_on5.676674.41367
413x51 vasop-oxy_on5.125.5975347
423x52 vasop-oxy_on5.544.3375143
434x56 vasop-oxy_on7.875.245145
44E2x50 vasop-oxy_on6.303334.8275349
455x43 vasop-oxy_on6.674.5375345
465x62 vasop-oxy_on02.686055
476x44 vasop-oxy_on8.96.092259
486x51 vasop-oxy_on10.843310.0925347
496x52 vasop-oxy_on11.13336.512357
507x45 vasop-oxy_on10.299.6975349
517x49 vasop-oxy_on7.986.132359
528x53 vasop-oxy_on07.3575040
   
Orange: nodes, hubs and links specific of vasop-oxy_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of vasop-oxy_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner vasop-oxy_off Recurrence vasop-oxy_on Recurrence vasop-oxy_off Hub1? vasop-oxy_on Hub1? vasop-oxy_off Hub2? vasop-oxy_on Hub2? ConSurf1 ConSurf2
11x35 1x39 vasop-oxy_off22.77590NoYesNoNo56
21x39 7x38 vasop-oxy_off28.95430NoNoNoNo66
32x60 7x38 vasop-oxy_off30.2150NoYesNoNo76
42x56 2x60 vasop-oxy_off31.74330YesYesNoYes77
51x38 7x39 vasop-oxy_off13.19721.20402NoNoNoNo45
67x35 7x39 vasop-oxy_off14.82370NoNoNoNo45
71x35 7x35 vasop-oxy_off16.42290.0240204NoYesNoNo54
81x53 2x47 vasop-oxy_off10.22817.62949NoNoNoNo99
91x53 7x53 vasop-oxy_off18.51330NoNoYesNo99
106x40 7x49 vasop-oxy_off47.80590YesNoNoYes89
116x48 Lig vasop-oxy_off66.68490YesYesYesYes80
122x38 I1x51 vasop-oxy_off10.370YesNoYesNo77
133x50 I1x51 vasop-oxy_off54.0170YesNoYesNo97
143x50 6x37 vasop-oxy_off62.05110YesNoNoNo98
155x58 6x37 vasop-oxy_off1001.4112YesNoNoNo98
165x58 6x41 vasop-oxy_off79.15620YesNoYesNo98
173x43 6x41 vasop-oxy_off35.28540NoNoYesNo88
183x43 6x40 vasop-oxy_off35.67840NoNoYesNo88
192x38 2x42 vasop-oxy_off10.10810YesNoYesYes78
203x46 6x37 vasop-oxy_off36.73730NoNoNoNo88
216x41 6x45 vasop-oxy_off22.17550YesNoNoNo86
226x45 6x46 vasop-oxy_off22.20280NoNoNoNo66
236x46 6x47 vasop-oxy_off22.58490NoNoNoNo68
246x47 7x45 vasop-oxy_off23.17982.8254NoNoNoYes89
25I1x51 I2 vasop-oxy_off45.90660YesNoYesNo77
262x41 2x42 vasop-oxy_off20.49990YesNoYesYes58
272x41 2x45 vasop-oxy_off16.34650YesNoNoNo59
282x45 4x50 vasop-oxy_off14.0760NoNoYesYes99
293x30 3x34 vasop-oxy_off10.1790.186158NoYesNoNo76
303x33 4x61 vasop-oxy_off43.22672.78337YesYesYesNo56
314x61 Lig vasop-oxy_off31.99980YesNoYesYes60
324x61 4x64 vasop-oxy_off22.33930YesNoYesNo65
334x64 E2 vasop-oxy_off29.5712.42306YesNoYesYes54
34E1x49 E1x51 vasop-oxy_off12.40590NoNoNoNo53
354x65 Lig vasop-oxy_off10.6320YesYesYesYes60
364x61 5x39 vasop-oxy_off26.76561.04189YesNoYesYes67
375x39 E2 vasop-oxy_off34.73971.6484YesYesYesYes74
383x29 Lig vasop-oxy_off11.83820YesYesYesYes40
39E1x50 E1x52 vasop-oxy_off11.03050YesYesNoNo76
403x22 E2 vasop-oxy_off15.87165.58174NoNoYesYes44
413x22 3x26 vasop-oxy_off12.40590NoNoNoNo46
423x33 3x37 vasop-oxy_off55.58898.75544YesYesYesYes56
433x33 5x43 vasop-oxy_off19.09730YesYesNoYes55
445x39 5x43 vasop-oxy_off17.60182.99354YesYesNoYes75
453x37 3x41 vasop-oxy_off55.41431.44123YesYesNoNo66
463x41 3x44 vasop-oxy_off55.41970NoNoYesNo67
473x44 5x54 vasop-oxy_off55.39790YesNoNoNo78
483x47 5x54 vasop-oxy_off27.00031.4112NoNoNoNo88
496x30 I2 vasop-oxy_off33.40250NoNoYesNo87
503x54 6x30 vasop-oxy_off29.01430YesNoNoNo88
513x54 5x61 vasop-oxy_off13.78670YesNoNoNo88
525x44 6x52 vasop-oxy_off15.62064.75604NoNoNoYes57
536x55 Lig vasop-oxy_off16.08990.375319NoNoYesYes60
546x55 7x34 vasop-oxy_off15.39130NoNoYesYes64
556x54 7x34 vasop-oxy_off11.06328.03183NoNoYesYes54
566x40 7x52 vasop-oxy_off13.90680YesNoNoNo88
576x39 7x52 vasop-oxy_off10.28271.40219NoNoNoNo78
585x54 6x41 vasop-oxy_off29.38540NoNoYesNo88
593x47 5x58 vasop-oxy_off26.520NoNoYesNo89
606x40 7x53 Shared23.86246.2603YesNoYesNo89
617x45 7x49 Shared49.181358.9551NoYesNoYes99
626x48 7x45 Shared71.291356.4089YesYesNoYes89
632x56 Lig Shared38.887749.0617YesYesYesYes70
642x42 3x46 Shared33.211459.5796YesYesNoNo88
653x34 4x57 Shared13.530217.1025NoNoNoNo67
663x33 4x57 Shared15.17332.2564YesYesNoNo57
67E1x49 E2 Shared15.882514.9557NoNoYesYes54
686x48 6x52 Shared13.131861.5583YesYesNoYes87
692x60 Lig vasop-oxy_on011.8391NoYesYesYes70
702x59 3x28 vasop-oxy_on3.7168411.5718NoNoNoNo46
713x28 E1x50 vasop-oxy_on014.9677NoNoYesYes67
722x60 2x63 vasop-oxy_on010.5029NoYesNoYes75
73E1x50 E2 vasop-oxy_on9.2293422.4351YesYesYesYes74
74E1x49 Lig vasop-oxy_on015.8805NoNoYesYes50
75E2 E2x51 vasop-oxy_on3.7768814.9557YesYesNoNo43
76E2x51 Lig vasop-oxy_on015.7484NoNoYesYes30
775x36 E2 vasop-oxy_on4.1425614.9287NoNoYesYes54
785x36 Lig vasop-oxy_on015.6913NoNoYesYes50
792x53 7x46 vasop-oxy_on1.3208255.5472NoYesNoNo79
802x53 2x56 vasop-oxy_on055.1269NoYesYesYes77
812x50 7x46 vasop-oxy_on3.9406254.5203NoYesNoNo99
827x49 7x50 vasop-oxy_on010.4129NoYesNoNo99
832x50 7x49 vasop-oxy_on6.5167650.2507NoYesNoYes99
846x51 6x52 vasop-oxy_on6.407652.7518NoYesNoYes77
856x51 Lig vasop-oxy_on6.3966850.2897NoYesYesYes70
861x53 7x50 vasop-oxy_on011.4187NoNoNoNo99
872x41 I1 vasop-oxy_on034.5654YesNoNoYes50
882x41 4x43 vasop-oxy_on035.8234YesNoNoNo53
892x42 4x43 vasop-oxy_on041.7925YesYesNoNo83
903x46 7x53 vasop-oxy_on060.7086NoNoYesNo89
913x43 7x53 vasop-oxy_on097.3067NoNoYesNo89
923x43 7x49 vasop-oxy_on0100NoNoNoYes89
932x40 I1 vasop-oxy_on010.8542NoYesNoYes90
941x60 I1 vasop-oxy_on012.2744NoYesNoYes00
954x50 4x53 vasop-oxy_on011.5628YesYesNoNo98
963x34 4x53 vasop-oxy_on015.3941NoNoNoNo68
973x33 Lig vasop-oxy_on020.9638YesYesYesYes50
983x30 4x57 vasop-oxy_on013.3013NoYesNoNo77
993x24 E1x50 vasop-oxy_on011.5718NoNoYesYes57
1003x37 5x461 vasop-oxy_on1.724711.5028YesYesNoNo65
1015x461 6x52 vasop-oxy_on011.5358NoNoNoYes57
1023x50 5x58 vasop-oxy_on030.551YesNoYesNo99
1035x58 6x36 vasop-oxy_on032.8689YesNoNoNo98
1046x36 6x40 vasop-oxy_on045.2695NoNoYesNo88
1053x50 5x61 vasop-oxy_on029.4791YesNoNoNo98
1063x51 5x61 vasop-oxy_on9.2948412.4876NoYesNoNo78
1076x27 6x30 vasop-oxy_on2.3359911.1425NoNoNoNo48
1086x27 6x29 vasop-oxy_on012.5086NoNoNoNo46
1095x65 6x29 vasop-oxy_on013.6436NoNoNoNo86
1105x61 5x65 vasop-oxy_on2.3359916.3459NoNoNoNo88
1116x36 7x56 vasop-oxy_on3.9242412.4726NoNoYesNo87
112E3 Lig vasop-oxy_on010.8272YesYesYesYes40

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x56LigShared30.612.41110
3x29Ligvasop-oxy_off9.7301110
3x32LigShared16.324.511110
3x36LigShared8.676.081110
4x61Ligvasop-oxy_off5.101010
4x65Ligvasop-oxy_off5.601010
5x40LigShared5.477.980110
6x48Ligvasop-oxy_off7.8601110
6x51LigShared9.337.381110
6x55LigShared10.220.811110
1x281x31Shared9.615.430111
1x352x64Shared12.996.750112
2x562x60vasop-oxy_off5.1201111
2x563x32vasop-oxy_off11.5201111
2x567x42Shared4.337.221112
2x607x38vasop-oxy_off6.800111
2x632x64vasop-oxy_off5.5800122
2x632x67vasop-oxy_off8.0200122
E1x49E1x51vasop-oxy_off23.6601112
E1x49E2Shared7.8519.061112
3x25E2vasop-oxy_off4.7601122
3x25E2x50Shared5.467.281122
3x293x32Shared8.145.421111
3x294x65Shared17.3724.821111
3x29E2x50Shared6.473.231112
3x333x37Shared6.097.180112
3x334x57Shared9.016.130112
3x334x61Shared14.648.160111
3x335x43vasop-oxy_off5.7100111
3x366x48vasop-oxy_off5.8201111
4x614x64vasop-oxy_off5.4901012
4x614x65Shared5.867.031011
4x615x39Shared6.765.641012
4x644x65Shared6.287.541121
4x64E2Shared6.288.791122
4x645x39vasop-oxy_off12.0901122
4x65E2x52Shared6.934.161011
E2E2Shared38.2643.451122
E2E2x51Shared16.6221.371121
5x36E2Shared21.676.410112
5x39E2Shared6.194.131122
5x395x43Shared7.254.841121
5x406x59Shared10.755.090112
5x425x43Shared7.054.70121
6x446x48Shared10.0211.580121
6x486x52Shared8.026.011112
6x487x41vasop-oxy_off7.7801112
6x487x45Shared13.5612.431112
6x516x52Shared1511.791112
6x516x55Shared8.212.881111
6x57E3Shared6.4813.240121
E3E3Shared8.397.920111
7x357x39vasop-oxy_off4.2800112
1x351x39vasop-oxy_off3.9800112
6x557x34vasop-oxy_off3.5101112
1x397x38vasop-oxy_off2.8300121
1x357x35Shared2.735.70111
7x30E3vasop-oxy_off1.5700021
3x283x29vasop-oxy_off1.5200021
7x38Ligvasop-oxy_on07.90110
2x60Ligvasop-oxy_on09.020110
3x33Ligvasop-oxy_on03.730110
5x43Ligvasop-oxy_on03.770110
5x36Ligvasop-oxy_on016.350110
E2x51Ligvasop-oxy_on031.640110
E2x52Ligvasop-oxy_on04.690110
E3Ligvasop-oxy_on03.280110
7x35Ligvasop-oxy_on06.150110
LigNTvasop-oxy_on05.331101
1x28Ligvasop-oxy_on04.760110
1x31Ligvasop-oxy_on010.930110
1x35Ligvasop-oxy_on04.650110
E1x49Ligvasop-oxy_on04.51110
1x32NTvasop-oxy_on05.530021
2x67NTvasop-oxy_on011.910021
1x281x30vasop-oxy_on04.070112
1x357x39vasop-oxy_on05.30112
1x397x39vasop-oxy_on05.540122
2x532x56vasop-oxy_on07.160121
2x537x42vasop-oxy_on03.230122
2x563x36vasop-oxy_on05.441111
2x602x63vasop-oxy_on04.380112
2x602x64vasop-oxy_on05.420112
2x603x32vasop-oxy_on07.680111
2x63E2vasop-oxy_on04.470122
3x253x29vasop-oxy_on03.231121
3x333x36vasop-oxy_on05.780111
3x375x43vasop-oxy_on04.840021
E2E2x50vasop-oxy_on04.611122
5x476x48vasop-oxy_on04.010121
5x476x52vasop-oxy_on05.360122
6x447x45vasop-oxy_on04.650122
6x517x41vasop-oxy_on08.321112
6x557x38vasop-oxy_on012.231111
6x576x61vasop-oxy_on08.930122
6x577x34vasop-oxy_on05.010122
6x61E3vasop-oxy_on017.570121
7x34E3vasop-oxy_on013.420121
7x31E3vasop-oxy_on03.270121
7x347x38vasop-oxy_on03.730121
1x317x32vasop-oxy_on03.150112
1x281x29vasop-oxy_on01.610112
1x311x34vasop-oxy_on01.580112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
vasop-oxy_off ot_off
vasop-oxy_on v2_on
Network Difference
Value vasop-oxy_off vasop-oxy_on
Imin 4.28 3.23
Number of Linked Nodes 220 234
Number of Specific Nodes 21 (9.55%) 35  (14.96%)
Number of Shared Nodes 199 (90.45%) 199  (85.04%)
Number of Links 239 277
Number of Specific Links 124 (51.88%) 162  (58.48%)
Number of Shared Links 115 (48.12%) 115  (41.52%)
Number of Hubs 29 37
Number of Specific Hubs 15 (51.72%) 23  (62.16%)
Number of Shared Hubs 14 (48.28%) 14  (37.84%)
Average % Shared Neighbours (Jaccard) 28.09
Average % Shared Neighbours (Otsuka) 36.70
Average % Shared Neighbours (Overlap Coefficient) 45.72
Average % Shared Cliques (k3-6) 76.25
Graphlets Similarity 0.583688
Paths Difference
Value vasop-oxy_off vasop-oxy_on
Number Of Nodes in MetaPath 64 51
Specific Nodes in MetaPath 37 (57.81%) 24  (47.06%)
Shared Nodes in MetaPath 199 (90.45%) 199  (90.45%)
Number Of Links MetaPath 68 53
Specific Links in MetaPath 59 (86.76%) 44  (83.02%)
Shared Links in MetaPath 115 (48.12%) 115  (48.12%)
Number of Shortest Paths 37840 57566
Length Of Smallest Path 3 3
Average Path Length 13.0741 13.6294
Length of Longest Path 30 28
Minimum Path Strength 1.22 1.19
Average Path Strength 7.23118 6.67444
Maximum Path Strength 19.145 19.6967
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.906758 0.919462
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.84615 5.26316
Average % Of Corr. Nodes 37.896 45.5495
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 45.9451 45.9975
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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