Code1IC
NameO-octanoyl-D-serine
Synonyms
Identifier
FormulaC11 H21 N O4
Molecular Weight231.289
SMILES
PubChem162368291
Formal Charge0
Total Atoms37
Total Chiral Atoms1
Total Bonds36
Total Aromatic Bonds0
Networks2
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This ligand is also present in the following 2 networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7NA7 A Peptide Ghrelin Ghrelin Homo Sapiens Ghrelin-27 - Gi1/Beta1/Gamma2 2.7 2021-12-15 doi.org/10.1038/s41467-021-26735-5

A 2D representation of the interactions of 1IC in 7NA7
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F309 R:R:L103 4.87 4 Yes No 5 4 2 2
L:L:F4 R:R:L103 10.96 4 Yes No 0 4 1 2
R:R:I178 R:R:Q120 4.12 4 Yes Yes 4 4 1 2
R:R:Q120 R:R:V182 12.89 4 Yes No 4 4 2 2
R:R:F121 R:R:I178 3.77 0 Yes Yes 6 4 2 1
R:R:E124 R:R:Y128 7.86 4 No Yes 4 6 1 1
R:R:E124 R:R:R283 11.63 4 No No 4 6 1 1
L:L:?3 R:R:E124 7.11 4 Yes No 0 4 0 1
R:R:S217 R:R:Y128 8.9 0 No Yes 6 6 2 1
R:R:F220 R:R:Y128 28.88 0 No Yes 6 6 2 1
L:L:?3 R:R:Y128 4.49 4 Yes Yes 0 6 0 1
R:R:M213 R:R:P177 8.39 0 No No 5 7 1 2
R:R:I178 R:R:V182 6.14 4 Yes No 4 4 1 2
L:L:?3 R:R:I178 3.28 4 Yes Yes 0 4 0 1
R:R:F286 R:R:P200 4.33 0 Yes No 4 4 1 2
R:R:F286 R:R:L210 4.87 0 Yes No 4 3 1 2
L:L:?3 R:R:M213 4.33 4 Yes No 0 5 0 1
R:R:F279 R:R:R283 13.9 0 Yes No 6 6 2 1
R:R:G282 R:R:N305 5.09 0 No No 4 4 2 1
L:L:?3 R:R:R283 13.97 4 Yes No 0 6 0 1
R:R:F286 R:R:F290 10.72 0 Yes Yes 4 1 1 2
L:L:?3 R:R:F286 9.33 4 Yes Yes 0 4 0 1
L:L:L5 R:R:F286 4.87 16 Yes Yes 0 4 2 1
R:R:N305 R:R:S301 5.96 0 No No 4 4 1 2
L:L:?3 R:R:N305 12.63 4 Yes No 0 4 0 1
L:L:F4 R:R:F309 5.36 4 Yes Yes 0 5 1 2
L:L:?3 L:L:F4 9.33 4 Yes Yes 0 0 0 1
L:L:F4 R:R:L306 2.44 4 Yes No 0 4 1 2
StatisticsValue
Average Number Of Links8.00
Average Number Of Links With An Hub4.00
Average Interaction Strength8.06
Average Nodes In Shell25.00
Average Hubs In Shell11.00
Average Links In Shell28.00
Average Links Mediated by Hubs In Shell24.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links7.50
Average Number Of Links With An Hub3.50
Average Interaction Strength8.40
Average Nodes In Shell23.00
Average Hubs In Shell9.50
Average Links In Shell25.50
Average Links Mediated by Hubs In Shell21.50

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Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

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Location of the nodes interacting with this ligand

(Click to enlarge 🔍)