CodeDLY
NameD-Lysine
Synonyms
  • (R)-2,6-diaminohexanoic acid
  • D-Lysine
  • D-2,6-Diaminohexanoic acid
  • D-Lysin
Identifier(2R)-2,6-diaminohexanoic acid
FormulaC6 H14 N2 O2
Molecular Weight146.188
SMILESC(CCN)C[C@H](C(=O)O)N
PubChem57449
Formal Charge0
Total Atoms24
Total Chiral Atoms1
Total Bonds23
Total Aromatic Bonds0
Networks1
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This ligand is also present in the following network:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7F9Z A Peptide Ghrelin Ghrelin Homo sapiens GHRP-6 - chim(NtGi1-Gs-CtGq)/Beta1/Gamma2 3.2 2021-08-18 10.1038/s41467-021-25364-2

A 2D representation of the interactions of DLY in 7F9Z
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 L:L:?2 16.25 0 No Yes 0 0 2 1
L:L:?2 L:L:?3 30.44 3 Yes Yes 0 0 1 2
L:L:?2 L:L:?6 9.62 3 Yes Yes 0 0 1 0
L:L:?2 R:R:D99 5.43 3 Yes No 0 6 1 1
L:L:?2 R:R:L103 8.87 3 Yes No 0 4 1 2
L:L:?2 R:R:Q302 11.72 3 Yes No 0 3 1 2
L:L:?2 R:R:F309 9.75 3 Yes Yes 0 5 1 2
L:L:?3 L:L:?4 18.04 3 Yes Yes 0 0 2 1
L:L:?3 R:R:F286 9.91 3 Yes Yes 0 4 2 2
L:L:?4 L:L:?5 14.15 3 Yes Yes 0 0 1 1
L:L:?4 L:L:?6 9.62 3 Yes Yes 0 0 1 0
L:L:?4 R:R:F286 3.9 3 Yes Yes 0 4 1 2
L:L:?4 R:R:S308 4.81 3 Yes No 0 7 1 2
L:L:?4 R:R:F309 8.78 3 Yes Yes 0 5 1 2
L:L:?5 L:L:?6 28.63 3 Yes Yes 0 0 1 0
L:L:?5 L:L:?7 5.87 3 Yes Yes 0 0 1 1
L:L:?5 R:R:E124 5.64 3 Yes Yes 0 4 1 1
L:L:?5 R:R:L181 11.78 3 Yes No 0 4 1 2
L:L:?5 R:R:P200 6.99 3 Yes No 0 4 1 2
L:L:?5 R:R:M213 12.03 3 Yes No 0 5 1 2
L:L:?5 R:R:R283 27.92 3 Yes Yes 0 6 1 2
L:L:?6 L:L:?7 23.95 3 Yes Yes 0 0 0 1
L:L:?6 R:R:D99 4.71 3 Yes No 0 6 0 1
L:L:?6 R:R:Q120 21.95 3 Yes Yes 0 4 0 1
L:L:?6 R:R:E124 6.9 3 Yes Yes 0 4 0 1
L:L:?6 R:R:I178 4.95 3 Yes No 0 4 0 1
L:L:?7 R:R:Q120 9.95 3 Yes Yes 0 4 1 1
L:L:?7 R:R:E124 13.21 3 Yes Yes 0 4 1 1
R:R:D99 R:R:F309 9.55 3 No Yes 6 5 1 2
R:R:F119 R:R:Q120 4.68 0 Yes Yes 4 4 2 1
R:R:E124 R:R:Y128 4.49 3 Yes No 4 6 1 2
R:R:E124 R:R:I178 6.83 3 Yes No 4 4 1 1
R:R:E124 R:R:R283 5.82 3 Yes Yes 4 6 1 2
R:R:L181 R:R:M213 7.07 3 No No 4 5 2 2
R:R:Q120 R:R:V182 2.87 3 Yes No 4 4 1 2
R:R:F121 R:R:I178 2.51 0 Yes No 6 4 2 1
StatisticsValue
Average Number Of Links8.00
Average Number Of Links With An Hub6.00
Average Interaction Strength13.79
Average Nodes In Shell24.00
Average Hubs In Shell13.00
Average Links In Shell36.00
Average Links Mediated by Hubs In Shell35.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links8.00
Average Number Of Links With An Hub6.00
Average Interaction Strength13.79
Average Nodes In Shell24.00
Average Hubs In Shell13.00
Average Links In Shell36.00
Average Links Mediated by Hubs In Shell35.00

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Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

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Location of the nodes interacting with this ligand

(Click to enlarge 🔍)