CodeERY
NameErythromycin
SynonymsEritromicina
Identifier(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-6-[(2S,3R,4S,6R)-4-dimethylamino-3-hydroxy-6-methyl-oxan-2-yl]oxy-14-ethyl-7,12,13-trihydroxy-4-[(2R,4R,5S,6S)-5-hydroxy-4-methoxy-4,6-dimethyl-oxan-2-yl]oxy-3,5,7,9,11,13-hexamethyl-1-oxacyclotetradecane-2,10-dione
FormulaC37 H67 N O13
Molecular Weight733.927
SMILESCC[C@@H]1[C@@]([C@@H]([C@H](C(=O)[C@@H](C[C@@]([C@@H]([C@H]([C@@H]([C@H](C(=O)O1)C)O[C@H]2C[C@@]([C@H]([C@@H](O2)C)O)(C)OC)C)O[C@H]
3[C@@H]([C@H](C[C@H](O3)C)N(C)C)O)(C)O)C)C)O)(C)O
PubChem12560
Formal Charge0
Total Atoms118
Total Chiral Atoms18
Total Bonds120
Total Aromatic Bonds0
Networks1
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This ligand is also present in the following network:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IBU A Peptide Motilin Motilin Homo Sapiens Erythromycin A - chim(NtGi1-Gs-CtGq)/Beta1/Gamma2 3.51 2023-04-12  10.1126/sciadv.ade9020

A 2D representation of the interactions of ERY in 8IBU
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F33 R:R:Q334 7.03 2 Yes No 6 5 1 1
R:R:F33 R:R:Y335 4.13 2 Yes No 6 4 1 2
R:R:F33 R:R:I338 13.82 2 Yes No 6 6 1 2
L:L:?1 R:R:F33 4.15 2 Yes Yes 0 6 0 1
R:R:F344 R:R:I87 6.28 0 Yes No 9 7 1 2
R:R:D94 R:R:R97 3.57 2 No Yes 7 6 1 1
L:L:?1 R:R:D94 10.17 2 Yes No 0 7 0 1
R:R:L115 R:R:R97 3.64 2 No Yes 5 6 1 1
L:L:?1 R:R:R97 12.41 2 Yes Yes 0 6 0 1
L:L:?1 R:R:L98 2.83 2 Yes No 0 6 0 1
R:R:E234 R:R:S101 8.62 0 No No 4 5 1 2
R:R:L115 R:R:S114 4.5 2 No No 5 6 1 2
L:L:?1 R:R:L115 5.65 2 Yes No 0 5 0 1
R:R:E119 R:R:T122 4.23 2 Yes No 6 8 2 2
R:R:E119 R:R:Y123 6.73 2 Yes Yes 6 7 2 2
R:R:E119 R:R:R318 10.47 2 Yes Yes 6 7 2 1
R:R:T122 R:R:Y123 3.75 2 No Yes 8 7 2 2
R:R:F344 R:R:T122 3.89 0 Yes No 9 8 1 2
R:R:T252 R:R:Y123 6.24 0 No Yes 7 7 2 2
R:R:R318 R:R:Y123 4.12 2 Yes Yes 7 7 1 2
L:L:?1 R:R:E234 5.41 2 Yes No 0 4 0 1
L:L:?1 R:R:R236 6.62 2 Yes No 0 5 0 1
R:R:L245 R:R:M248 2.83 2 No Yes 4 6 2 2
R:R:L245 R:R:L249 4.15 2 No Yes 4 5 2 1
R:R:L249 R:R:M248 5.65 2 Yes Yes 5 6 1 2
R:R:L249 R:R:T252 4.42 2 Yes No 5 7 1 2
R:R:L249 R:R:R318 4.86 2 Yes Yes 5 7 1 1
L:L:?1 R:R:L249 2.83 2 Yes Yes 0 5 0 1
R:R:F344 R:R:W311 3.01 0 Yes Yes 9 8 1 2
R:R:F314 R:R:R318 16.03 0 No Yes 6 7 2 1
L:L:?1 R:R:R318 7.44 2 Yes Yes 0 7 0 1
R:R:N337 R:R:Y321 3.49 2 No No 6 5 1 1
L:L:?1 R:R:Y321 15.96 2 Yes No 0 5 0 1
L:L:?1 R:R:Q334 11.78 2 Yes No 0 5 0 1
L:L:?1 R:R:N337 3.74 2 Yes No 0 6 0 1
R:R:L341 R:R:Y345 5.86 0 No No 6 8 1 2
L:L:?1 R:R:L341 10.37 2 Yes No 0 6 0 1
R:R:F344 R:R:Y345 8.25 0 Yes No 9 8 1 2
L:L:?1 R:R:F344 3.32 2 Yes Yes 0 9 0 1
R:R:R97 R:R:V105 2.62 2 Yes No 6 5 1 2
R:R:S333 R:R:Y321 2.54 0 No No 7 5 2 1
R:R:P32 R:R:Q334 1.58 0 No No 3 5 2 1
R:R:F33 R:R:P34 1.44 2 Yes No 6 8 1 2
StatisticsValue
Average Number Of Links14.00
Average Number Of Links With An Hub5.00
Average Interaction Strength7.33
Average Nodes In Shell33.00
Average Hubs In Shell10.00
Average Links In Shell43.00
Average Links Mediated by Hubs In Shell37.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links14.00
Average Number Of Links With An Hub5.00
Average Interaction Strength7.33
Average Nodes In Shell33.00
Average Hubs In Shell10.00
Average Links In Shell43.00
Average Links Mediated by Hubs In Shell37.00

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Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

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Location of the nodes interacting with this ligand

(Click to enlarge 🔍)