CodeHXD
Name(3R)-3-HYDROXYDODECANOIC ACID
Synonyms3-OH-DODECANOATE
Identifier
FormulaC12 H24 O3
Molecular Weight216.317
SMILES
PubChem5312804
Formal Charge0
Total Atoms39
Total Chiral Atoms1
Total Bonds38
Total Aromatic Bonds0
Networks2
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This ligand is also present in the following 2 networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8J18 A Orphan Orphan GPR84 Homo Sapiens (3R)-3-Hydroxydodecanoic acid - Gi1/Beta1/Gamma2 2.89 2023-06-21 10.1038/s41467-023-38985-6

A 2D representation of the interactions of HXD in 8J18
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L100 8.66 1 Yes No 0 8 0 1
L:L:?1 R:R:F101 9.53 1 Yes Yes 0 7 0 1
L:L:?1 R:R:N104 15.04 1 Yes No 0 7 0 1
L:L:?1 R:R:I108 4.47 1 Yes No 0 8 0 1
L:L:?1 R:R:F152 6.67 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V165 3.5 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y186 10.09 1 Yes Yes 0 8 0 1
L:L:?1 R:R:Y332 3.67 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F335 20.01 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L336 5.42 1 Yes No 0 7 0 1
L:L:?1 R:R:A356 3.7 1 Yes No 0 6 0 1
L:L:?1 R:R:T359 11.53 1 Yes No 0 8 0 1
R:R:L100 R:R:Y69 3.52 1 No Yes 8 8 1 2
R:R:S103 R:R:Y69 5.09 0 No Yes 6 8 2 2
R:R:F101 R:R:L100 6.09 1 Yes No 7 8 1 1
R:R:F101 R:R:F152 13.93 1 Yes Yes 7 8 1 1
R:R:F101 R:R:F170 7.5 1 Yes No 7 6 1 2
R:R:N104 R:R:S103 4.47 1 No No 7 6 1 2
R:R:N104 R:R:Y332 8.14 1 No Yes 7 8 1 1
R:R:F152 R:R:S105 5.28 1 Yes Yes 8 7 1 2
R:R:S105 R:R:Y186 6.36 0 Yes Yes 7 8 2 1
R:R:I108 R:R:Y186 6.04 1 No Yes 8 8 1 1
R:R:I108 R:R:Y332 15.71 1 No Yes 8 8 1 1
R:R:L109 R:R:Y186 10.55 0 No Yes 6 8 2 1
R:R:F152 R:R:S151 3.96 1 Yes No 8 7 1 2
R:R:L182 R:R:S151 9.01 1 No No 8 7 2 2
R:R:F152 R:R:L155 3.65 1 Yes Yes 8 8 1 2
R:R:F152 R:R:Y159 3.09 1 Yes Yes 8 5 1 2
R:R:F152 R:R:L182 4.87 1 Yes No 8 8 1 2
R:R:L155 R:R:Y159 8.21 1 Yes Yes 8 5 2 2
R:R:V162 R:R:V165 3.21 0 No Yes 3 4 2 1
R:R:T167 R:R:V165 3.17 13 No Yes 4 4 2 1
R:R:R172 R:R:V165 3.92 1 Yes Yes 5 4 2 1
R:R:F170 R:R:R172 16.03 0 No Yes 6 5 2 2
R:R:F335 R:R:R172 3.21 1 Yes Yes 8 5 1 2
R:R:N339 R:R:R172 4.82 1 No Yes 7 5 2 2
R:R:T359 R:R:Y332 4.99 1 No Yes 8 8 1 1
R:R:N362 R:R:Y332 9.3 1 Yes Yes 9 8 2 1
R:R:F335 R:R:N339 16.92 1 Yes No 8 7 1 2
R:R:F335 R:R:T359 5.19 1 Yes No 8 8 1 1
R:R:A355 R:R:F335 2.77 0 No Yes 6 8 2 1
StatisticsValue
Average Number Of Links12.00
Average Number Of Links With An Hub6.00
Average Interaction Strength8.52
Average Nodes In Shell28.00
Average Hubs In Shell13.00
Average Links In Shell41.00
Average Links Mediated by Hubs In Shell39.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links11.00
Average Number Of Links With An Hub5.00
Average Interaction Strength9.02
Average Nodes In Shell23.50
Average Hubs In Shell10.00
Average Links In Shell33.00
Average Links Mediated by Hubs In Shell31.50

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Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

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Location of the nodes interacting with this ligand

(Click to enlarge 🔍)