CodeODM
Name(3R)-3,7-dimethyloct-6-en-1-ol
Synonymscitronellol
Identifier(3~{R})-3,7-dimethyloct-6-en-1-ol
FormulaC10 H20 O
Molecular Weight156.265
SMILESC[C@H](CCC=C(C)C)CCO
PubChem101977
Formal Charge0
Total Atoms31
Total Chiral Atoms1
Total Bonds30
Total Aromatic Bonds0
Networks1
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This ligand is also present in the following network:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6PEL A Sensory Opsins Rhodopsin Bos taurus - Citronellol Gt(CT) 3.19 2020-06-24 To be published

A 2D representation of the interactions of ODM in 6PEL
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:C167 R:R:E122 10.64 1 No No 5 6 2 1
R:R:E122 R:R:H211 6.15 1 No Yes 6 6 1 2
R:R:E122 W:W:?1 5.31 1 No Yes 6 0 1 0
R:R:F261 R:R:L125 3.65 1 No No 9 7 2 2
R:R:L125 R:R:W265 13.67 1 No Yes 7 8 2 1
R:R:C167 R:R:H211 16.22 1 No Yes 5 6 2 2
R:R:Y191 R:R:Y192 9.93 1 Yes No 6 5 1 2
R:R:Y191 R:R:Y268 7.94 1 Yes No 6 6 1 1
R:R:A272 R:R:Y191 5.34 1 No Yes 5 6 1 1
R:R:Y191 W:W:?1 4.7 1 Yes Yes 6 0 1 0
R:R:F203 R:R:M207 6.22 1 Yes No 6 5 2 1
R:R:F276 R:R:V204 20.97 0 No No 4 4 2 1
R:R:V204 W:W:?1 8.95 0 No Yes 4 0 1 0
R:R:H211 R:R:M207 3.94 1 Yes No 6 5 2 1
R:R:M207 W:W:?1 5.66 0 No Yes 5 0 1 0
R:R:F208 R:R:F212 7.5 1 No Yes 5 8 1 1
R:R:F208 R:R:I213 6.28 1 No No 5 4 1 2
R:R:F208 W:W:?1 3.66 1 No Yes 5 0 1 0
R:R:F212 R:R:I213 3.77 1 Yes No 8 4 1 2
R:R:F212 R:R:L216 3.65 1 Yes No 8 7 1 2
R:R:F212 R:R:L266 3.65 1 Yes No 8 6 1 2
R:R:A269 R:R:F212 8.32 1 No Yes 7 8 1 1
R:R:F212 W:W:?1 4.88 1 Yes Yes 8 0 1 0
R:R:F261 R:R:W265 8.02 1 No Yes 9 8 2 1
R:R:C264 R:R:W265 10.45 1 No Yes 8 8 2 1
R:R:W265 W:W:?1 4.56 1 Yes Yes 8 0 1 0
R:R:P291 R:R:Y268 8.34 0 No No 6 6 2 1
R:R:Y268 W:W:?1 4.7 1 No Yes 6 0 1 0
R:R:A269 W:W:?1 4.73 1 No Yes 7 0 1 0
R:R:A272 W:W:?1 7.89 1 No Yes 5 0 1 0
R:R:A269 R:R:G270 1.95 1 No No 7 5 1 2
R:R:A295 R:R:W265 1.3 0 No Yes 8 8 2 1
StatisticsValue
Average Number Of Links10.00
Average Number Of Links With An Hub3.00
Average Interaction Strength5.50
Average Nodes In Shell25.00
Average Hubs In Shell6.00
Average Links In Shell32.00
Average Links Mediated by Hubs In Shell26.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links10.00
Average Number Of Links With An Hub3.00
Average Interaction Strength5.50
Average Nodes In Shell25.00
Average Hubs In Shell6.00
Average Links In Shell32.00
Average Links Mediated by Hubs In Shell26.00

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Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

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Location of the nodes interacting with this ligand

(Click to enlarge 🔍)